Wall clock time and date at job start Tue Mar 31 2020 21:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.61034 * 2 1 4 4 C 1.53370 * 109.61019 * 120.52388 * 2 1 3 5 5 N 1.46957 * 108.63665 * 70.31765 * 4 2 1 6 6 C 1.34783 * 120.59465 * 235.24612 * 5 4 2 7 7 O 1.21278 * 120.00053 * 179.97438 * 6 5 4 8 8 C 1.50698 * 119.99414 * 359.97438 * 6 5 4 9 9 C 1.53004 * 109.46680 * 180.02562 * 8 6 5 10 10 O 1.42898 * 109.47074 * 180.02562 * 9 8 6 11 11 C 1.42898 * 114.00295 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47670 * 180.02562 * 11 10 9 13 13 F 1.39901 * 109.47230 * 59.99496 * 12 11 10 14 14 F 1.39889 * 109.47336 * 180.02562 * 12 11 10 15 15 F 1.39903 * 109.46878 * 300.00044 * 12 11 10 16 16 C 1.46968 * 118.81586 * 55.22706 * 5 4 2 17 17 C 1.53370 * 108.63102 * 304.77567 * 16 5 4 18 18 H 1.09002 * 109.74947 * 289.58928 * 17 16 5 19 19 C 1.53004 * 109.60857 * 169.17038 * 17 16 5 20 20 N 1.46959 * 108.64029 * 49.42206 * 17 16 5 21 21 C 1.36930 * 120.59794 * 124.75042 * 20 17 16 22 22 H 1.07997 * 120.00026 * 326.51368 * 21 20 17 23 23 C 1.38813 * 120.00216 * 146.50977 * 21 20 17 24 24 N 1.31620 * 119.99859 * 344.53359 * 23 21 20 25 25 Si 1.86807 * 119.99994 * 164.52635 * 23 21 20 26 26 H 1.48497 * 109.46814 * 90.00309 * 25 23 21 27 27 H 1.48504 * 109.47002 * 210.00418 * 25 23 21 28 28 H 1.48502 * 109.47067 * 330.00352 * 25 23 21 29 29 H 1.08996 * 109.46979 * 180.33658 * 1 2 3 30 30 H 1.08997 * 109.47024 * 60.33390 * 1 2 3 31 31 H 1.09001 * 109.46634 * 300.33543 * 1 2 3 32 32 H 1.09005 * 109.60798 * 190.06255 * 4 2 1 33 33 H 1.08997 * 109.60544 * 310.56995 * 4 2 1 34 34 H 1.08999 * 109.47396 * 299.99401 * 8 6 5 35 35 H 1.08994 * 109.47196 * 60.00188 * 8 6 5 36 36 H 1.08995 * 109.47109 * 299.99733 * 9 8 6 37 37 H 1.08994 * 109.47236 * 60.00110 * 9 8 6 38 38 H 1.09002 * 109.47036 * 300.00151 * 11 10 9 39 39 H 1.08997 * 109.47149 * 59.99430 * 11 10 9 40 40 H 1.08994 * 109.61266 * 185.02707 * 16 5 4 41 41 H 1.08998 * 109.61087 * 64.51448 * 16 5 4 42 42 H 1.09006 * 109.46671 * 306.26485 * 19 17 16 43 43 H 1.08998 * 109.47336 * 66.26598 * 19 17 16 44 44 H 1.09000 * 109.46771 * 186.27184 * 19 17 16 45 45 H 0.96997 * 119.99536 * 185.09403 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 6 2.0448 -0.7338 1.2445 5 7 1.7606 -2.1679 1.0953 6 6 1.0599 -2.8300 2.0372 7 8 0.8311 -4.0134 1.9028 8 6 0.5607 -2.0997 3.2572 9 6 -0.1978 -3.0745 4.1602 10 8 -0.6717 -2.3820 5.3168 11 6 -1.3984 -3.2060 6.2306 12 6 -1.8554 -2.3644 7.4238 13 9 -2.6796 -1.3271 6.9745 14 9 -2.5662 -3.1712 8.3187 15 9 -0.7375 -1.8253 8.0696 16 6 2.2538 -2.8671 -0.0996 17 6 1.7390 -2.1334 -1.3442 18 1 0.6641 -2.2850 -1.4429 19 6 2.4497 -2.6711 -2.5879 20 7 2.0232 -0.6992 -1.1950 21 6 2.7352 -0.0266 -2.1519 22 1 3.5192 -0.5317 -2.6963 23 6 2.4491 1.3046 -2.4222 24 7 1.3215 1.8347 -1.9979 25 14 3.6645 2.3437 -3.3880 26 1 3.3601 2.2419 -4.8378 27 1 3.5558 3.7608 -2.9575 28 1 5.0438 1.8543 -3.1362 29 1 -0.3633 -1.0276 0.0060 30 1 -0.3633 0.5086 -0.8929 31 1 -0.3633 0.5191 0.8870 32 1 3.1200 -0.5819 1.3402 33 1 1.5385 -0.3507 2.1305 34 1 1.4072 -1.6832 3.8031 35 1 -0.1062 -1.2939 2.9508 36 1 -1.0443 -3.4915 3.6146 37 1 0.4693 -3.8801 4.4666 38 1 -2.2696 -3.6257 5.7276 39 1 -0.7563 -4.0144 6.5803 40 1 1.8855 -3.8930 -0.1013 41 1 3.3438 -2.8672 -0.0997 42 1 3.5286 -2.6121 -2.4438 43 1 2.1611 -3.7094 -2.7509 44 1 2.1658 -2.0746 -3.4549 45 1 1.0874 2.7418 -2.2491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:42 Heat of formation + Delta-G solvation = -225.061254 kcal Electronic energy + Delta-G solvation = -30573.283104 eV Core-core repulsion = 25790.183101 eV Total energy + Delta-G solvation = -4783.100003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.10403 -48.65685 -48.58902 -41.27763 -39.37663 -38.73493 -35.67080 -34.54727 -33.05638 -32.96796 -30.37597 -29.68314 -27.88309 -27.10694 -25.65113 -24.31244 -24.13712 -22.61340 -21.14533 -19.94268 -19.66709 -19.63419 -18.77541 -18.44145 -17.67703 -17.36399 -17.23092 -16.72046 -16.63382 -16.25092 -15.79302 -15.51448 -15.47595 -15.35195 -15.03891 -14.96820 -14.82629 -14.77332 -14.75250 -14.66101 -14.33401 -13.91541 -13.60409 -13.48783 -13.05715 -12.86519 -12.83784 -12.68919 -12.51817 -12.45267 -12.36129 -12.28834 -12.20099 -12.01435 -11.74604 -11.56902 -11.27255 -10.90523 -10.82482 -10.44267 -9.70256 -8.41023 -7.80038 -5.27361 1.40073 1.49213 1.53548 1.60017 1.61743 1.97064 2.40834 2.56082 2.84945 3.01146 3.35202 3.38906 3.55746 3.65167 4.00137 4.01012 4.13067 4.13636 4.17416 4.28670 4.38441 4.45612 4.53061 4.62886 4.66192 4.73772 4.75340 4.80179 4.86573 4.88542 4.95157 5.11799 5.23038 5.38321 5.40188 5.55437 5.74175 5.77195 5.79172 5.93676 6.51572 6.51813 7.14977 7.25304 7.91351 8.47085 9.25676 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002438 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.053844 B =11482.813185 C =12395.945793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.177 3.823 3 H 0.071 0.929 4 C 0.096 3.904 5 N -0.596 5.596 6 C 0.517 3.483 7 O -0.587 6.587 8 C -0.136 4.136 9 C 0.088 3.912 10 O -0.391 6.391 11 C 0.018 3.982 12 C 0.461 3.539 13 F -0.187 7.187 14 F -0.176 7.176 15 F -0.186 7.186 16 C 0.110 3.890 17 C 0.152 3.848 18 H 0.009 0.991 19 C -0.127 4.127 20 N -0.594 5.594 21 C -0.255 4.255 22 H 0.067 0.933 23 C -0.037 4.037 24 N -0.920 5.920 25 Si 0.955 3.045 26 H -0.292 1.292 27 H -0.297 1.297 28 H -0.273 1.273 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -9.779 16.582 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.070 3.930 3 H 0.089 0.911 4 C -0.028 4.028 5 N -0.326 5.326 6 C 0.306 3.694 7 O -0.469 6.469 8 C -0.175 4.175 9 C 0.012 3.988 10 O -0.311 6.311 11 C -0.060 4.060 12 C 0.406 3.594 13 F -0.169 7.169 14 F -0.157 7.157 15 F -0.168 7.168 16 C -0.014 4.014 17 C 0.045 3.955 18 H 0.027 0.973 19 C -0.185 4.185 20 N -0.318 5.318 21 C -0.385 4.385 22 H 0.085 0.915 23 C -0.233 4.233 24 N -0.565 5.565 25 Si 0.785 3.215 26 H -0.219 1.219 27 H -0.223 1.223 28 H -0.198 1.198 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.561 -9.983 16.579 19.678 hybrid contribution 0.170 0.954 -0.799 1.256 sum -3.391 -9.029 15.780 18.494 Atomic orbital electron populations 1.21873 0.98015 0.98232 1.00757 1.20626 0.92384 0.95567 0.84388 0.91148 1.22518 1.01120 0.79045 1.00101 1.48027 1.53220 1.10724 1.20676 1.20722 0.77280 0.86823 0.84539 1.90637 1.59647 1.17041 1.79591 1.21468 1.03032 0.99755 0.93256 1.22158 0.98275 0.93797 0.84533 1.87790 1.73276 1.36616 1.33400 1.23694 1.00959 0.92706 0.88663 1.20435 0.75060 0.79062 0.84793 1.93204 1.73496 1.61163 1.89027 1.93207 1.79214 1.73039 1.70258 1.93200 1.52634 1.87293 1.83630 1.22076 0.98616 0.96199 0.84533 1.20883 0.95568 0.85265 0.93740 0.97325 1.21676 1.00251 0.99735 0.96845 1.44342 1.63237 1.04098 1.20120 1.19305 1.10607 0.93388 1.15207 0.91497 1.25766 0.97408 0.99928 1.00236 1.70062 1.22538 1.15109 1.48829 0.85467 0.79761 0.78044 0.78239 1.21896 1.22326 1.19815 0.95897 0.93873 0.93017 0.91352 0.87628 0.86141 0.87203 0.91815 0.91070 0.86445 0.86078 0.89838 0.91356 0.92487 0.91279 0.93497 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.95 71.98 0.64 -4.65 16 2 C 0.18 7.34 2.34 45.03 0.11 7.45 16 3 H 0.07 3.36 6.34 -2.39 -0.02 3.35 16 4 C 0.10 3.04 5.88 86.42 0.51 3.55 16 5 N -0.60 -19.06 2.59 -818.03 -2.12 -21.18 16 6 C 0.52 15.31 7.70 87.66 0.67 15.99 16 7 O -0.59 -20.37 15.39 -3.02 -0.05 -20.42 16 8 C -0.14 -2.96 4.41 29.85 0.13 -2.83 16 9 C 0.09 1.70 5.23 71.98 0.38 2.08 16 10 O -0.39 -7.34 10.23 -148.98 -1.52 -8.87 16 11 C 0.02 0.23 5.90 71.98 0.42 0.65 16 12 C 0.46 7.56 3.32 71.98 0.24 7.80 16 13 F -0.19 -3.80 17.26 44.97 0.78 -3.03 16 14 F -0.18 -2.72 17.32 44.97 0.78 -1.94 16 15 F -0.19 -3.63 17.26 44.97 0.78 -2.85 16 16 C 0.11 3.74 5.91 86.41 0.51 4.25 16 17 C 0.15 5.98 3.23 45.03 0.15 6.12 16 18 H 0.01 0.39 7.41 -2.39 -0.02 0.37 16 19 C -0.13 -4.48 7.99 71.98 0.58 -3.90 16 20 N -0.59 -26.78 2.66 -650.68 -1.73 -28.51 16 21 C -0.25 -12.69 8.33 84.03 0.70 -11.99 16 22 H 0.07 3.28 6.48 -2.91 -0.02 3.26 16 23 C -0.04 -1.89 4.91 84.86 0.42 -1.48 16 24 N -0.92 -49.72 10.20 21.65 0.22 -49.50 16 25 Si 0.96 42.38 29.59 68.60 2.03 44.41 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 H 0.02 0.90 7.02 -2.39 -0.02 0.88 16 30 H 0.04 2.09 6.95 -2.39 -0.02 2.07 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.11 2.67 5.89 -2.39 -0.01 2.66 16 34 H 0.12 2.21 7.91 -2.39 -0.02 2.19 16 35 H 0.11 2.36 7.72 -2.39 -0.02 2.34 16 36 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.07 1.28 8.10 -2.39 -0.02 1.27 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 2.80 6.99 -2.39 -0.02 2.79 16 41 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 42 H 0.06 1.94 7.63 -2.38 -0.02 1.92 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.05 1.84 7.40 -2.39 -0.02 1.83 16 45 H 0.25 13.25 8.32 -92.71 -0.77 12.47 16 Total: -1.00 -61.70 368.94 5.62 -56.08 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.01 Total: 12.75 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 5.45 Total: 23.04 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -3.63 Total: -99.18 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.57 Total: -29.29 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 2.33 Total: -7.82 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -61.70 5.62 -56.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.979 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds