Wall clock time and date at job start Tue Mar 31 2020 21:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47111 * 2 1 4 4 N 1.46497 * 109.46864 * 120.00460 * 2 1 3 5 5 C 1.34777 * 119.99756 * 274.99505 * 4 2 1 6 6 O 1.21591 * 120.00251 * 5.52673 * 5 4 2 7 7 N 1.34777 * 120.00279 * 185.52037 * 5 4 2 8 8 C 1.46965 * 120.59065 * 354.86463 * 7 5 4 9 9 C 1.52927 * 108.68980 * 235.11571 * 8 7 5 10 10 H 1.09000 * 109.45971 * 70.58935 * 9 8 7 11 11 C 1.53000 * 109.52814 * 190.95459 * 9 8 7 12 12 N 1.46966 * 108.87433 * 310.78994 * 9 8 7 13 13 C 1.36929 * 120.59747 * 235.20744 * 12 9 8 14 14 H 1.07999 * 120.00041 * 126.12985 * 13 12 9 15 15 C 1.38807 * 120.00227 * 306.13336 * 13 12 9 16 16 N 1.31625 * 119.99794 * 341.24766 * 15 13 12 17 17 Si 1.86800 * 120.00468 * 161.24688 * 15 13 12 18 18 H 1.48496 * 109.47381 * 270.00152 * 17 15 13 19 19 H 1.48501 * 109.46750 * 29.99750 * 17 15 13 20 20 H 1.48498 * 109.47425 * 149.99661 * 17 15 13 21 21 C 1.46965 * 118.80968 * 54.93434 * 12 9 8 22 22 H 1.09008 * 109.61070 * 64.76427 * 21 12 9 23 23 C 1.52998 * 109.61200 * 185.11035 * 21 12 9 24 24 C 1.46966 * 120.59788 * 174.88037 * 7 5 4 25 25 C 1.50708 * 109.47059 * 240.00267 * 2 1 3 26 26 C 1.33632 * 126.03666 * 100.00276 * 25 2 1 27 27 N 1.31784 * 114.49793 * 180.02562 * 26 25 2 28 28 C 1.29025 * 117.12536 * 359.97438 * 27 26 25 29 29 S 1.70974 * 110.16733 * 359.73174 * 28 27 26 30 30 H 1.09000 * 109.47509 * 299.99715 * 1 2 3 31 31 H 1.09002 * 109.46864 * 60.00227 * 1 2 3 32 32 H 1.09001 * 109.47414 * 179.97438 * 1 2 3 33 33 H 0.97002 * 120.00162 * 94.99870 * 4 2 1 34 34 H 1.09004 * 109.61254 * 354.99104 * 8 7 5 35 35 H 1.09004 * 109.61357 * 115.33065 * 8 7 5 36 36 H 1.08998 * 109.47418 * 188.68361 * 11 9 8 37 37 H 1.09008 * 109.46944 * 308.67940 * 11 9 8 38 38 H 1.08997 * 109.47404 * 68.67952 * 11 9 8 39 39 H 0.97001 * 119.99977 * 175.08466 * 16 15 13 40 40 H 1.09000 * 109.47122 * 59.99622 * 23 21 12 41 41 H 1.08999 * 109.47382 * 179.97438 * 23 21 12 42 42 H 1.08996 * 109.46895 * 299.99874 * 23 21 12 43 43 H 1.09000 * 109.60340 * 5.01401 * 24 7 5 44 44 H 1.08999 * 109.75055 * 244.58687 * 24 7 5 45 45 H 1.07999 * 122.75081 * 359.97438 * 26 25 2 46 46 H 1.08006 * 124.91811 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.7643 1.1328 2.4387 7 7 2.6999 -0.6221 3.4278 8 6 3.0638 -2.0451 3.3789 9 6 2.3763 -2.7669 4.5386 10 1 1.3044 -2.8206 4.3485 11 6 2.9488 -4.1794 4.6733 12 7 2.6205 -2.0156 5.7779 13 6 3.1822 -2.6290 6.8656 14 1 4.0643 -2.2095 7.3264 15 6 2.6180 -3.7900 7.3760 16 7 1.3744 -4.1029 7.0793 17 14 3.6235 -4.9084 8.4840 18 1 4.3361 -5.9145 7.6563 19 1 4.6129 -4.0979 9.2386 20 1 2.7210 -5.6017 9.4379 21 6 2.2565 -0.5926 5.8268 22 1 1.1758 -0.4878 5.7304 23 6 2.7142 0.0092 7.1569 24 6 2.9493 0.1307 4.6651 25 6 2.0323 -0.7104 -1.2306 26 6 2.4713 -0.1280 -2.3503 27 7 2.8581 -0.9691 -3.2883 28 6 2.7702 -2.2285 -3.0217 29 16 2.1518 -2.4553 -1.4440 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6319 1.1525 34 1 2.7351 -2.4746 2.4325 35 1 4.1448 -2.1497 3.4721 36 1 2.3569 -4.7442 5.3936 37 1 2.9157 -4.6787 3.7049 38 1 3.9814 -4.1217 5.0173 39 1 1.0028 -4.9481 7.3767 40 1 3.7957 -0.0914 7.2482 41 1 2.4436 1.0645 7.1906 42 1 2.2297 -0.5169 7.9794 43 1 2.5447 1.1382 4.5681 44 1 4.0214 0.1835 4.8543 45 1 2.5056 0.9440 -2.4767 46 1 3.0506 -3.0242 -3.6961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898178593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:46 Heat of formation + Delta-G solvation = 39.157794 kcal Electronic energy + Delta-G solvation = -28199.074477 eV Core-core repulsion = 24444.334234 eV Total energy + Delta-G solvation = -3754.740243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56411 -40.61467 -39.19952 -36.93039 -35.82862 -34.71802 -33.11489 -32.34050 -29.98783 -29.47135 -27.65403 -27.25594 -26.51262 -25.47017 -23.54594 -22.09579 -21.80082 -21.35730 -20.48572 -19.65077 -18.83952 -17.86160 -17.41612 -16.83615 -16.60068 -16.40468 -16.22538 -15.79508 -15.53200 -15.41519 -15.22239 -14.87048 -14.78245 -14.49109 -14.31754 -13.75707 -13.64301 -13.34413 -13.23339 -13.14239 -12.91833 -12.70290 -12.63986 -12.45482 -12.29908 -12.21878 -12.20281 -12.16871 -11.72189 -11.63107 -11.51449 -11.15638 -10.68957 -10.45304 -10.26554 -10.14723 -9.93692 -9.54067 -8.35580 -7.67187 -5.59501 -0.32377 0.32131 0.74153 1.47573 1.52287 1.56559 1.58573 1.86273 2.09159 2.51694 2.84019 3.25943 3.34698 3.51821 3.63253 4.09881 4.14098 4.18717 4.21440 4.30232 4.37659 4.49514 4.50887 4.52229 4.56758 4.69492 4.77010 4.83414 4.86078 4.92161 4.97815 5.01737 5.12420 5.19458 5.21851 5.36905 5.42575 5.43156 5.61082 5.63817 5.77377 5.93032 5.98970 6.59585 6.68114 6.87954 7.25692 7.48142 7.79120 8.53340 9.16014 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.003199 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.810296 B = 8750.128312 C = 9829.223022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 H 0.099 0.901 4 N -0.737 5.737 5 C 0.706 3.294 6 O -0.626 6.626 7 N -0.620 5.620 8 C 0.107 3.893 9 C 0.182 3.818 10 H -0.003 1.003 11 C -0.138 4.138 12 N -0.590 5.590 13 C -0.260 4.260 14 H 0.051 0.949 15 C 0.001 3.999 16 N -0.906 5.906 17 Si 0.937 3.063 18 H -0.276 1.276 19 H -0.270 1.270 20 H -0.300 1.300 21 C 0.151 3.849 22 H -0.003 1.003 23 C -0.116 4.116 24 C 0.129 3.871 25 C -0.241 4.241 26 C 0.043 3.957 27 N -0.498 5.498 28 C 0.027 3.973 29 S 0.149 5.851 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.400 0.600 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.250 0.750 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.189 0.811 46 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 2.152 -18.122 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 H 0.116 0.884 4 N -0.395 5.395 5 C 0.408 3.592 6 O -0.508 6.508 7 N -0.355 5.355 8 C -0.018 4.018 9 C 0.075 3.925 10 H 0.015 0.985 11 C -0.196 4.196 12 N -0.315 5.315 13 C -0.390 4.390 14 H 0.068 0.932 15 C -0.199 4.199 16 N -0.548 5.548 17 Si 0.764 3.236 18 H -0.202 1.202 19 H -0.195 1.195 20 H -0.227 1.227 21 C 0.045 3.955 22 H 0.015 0.985 23 C -0.174 4.174 24 C 0.005 3.995 25 C -0.363 4.363 26 C -0.109 4.109 27 N -0.211 5.211 28 C -0.270 4.270 29 S 0.402 5.598 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.238 0.762 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.206 0.794 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.290 2.144 -17.912 18.184 hybrid contribution 0.115 -0.378 0.722 0.823 sum 2.406 1.766 -17.190 17.447 Atomic orbital electron populations 1.22180 0.93375 1.02769 1.02970 1.18969 0.94269 0.95330 0.77755 0.88364 1.45419 1.71996 1.13769 1.08357 1.15905 0.78299 0.84224 0.80764 1.90839 1.57326 1.18373 1.84267 1.47241 1.64190 1.11408 1.12668 1.22284 1.00475 0.79630 0.99367 1.20454 0.94403 0.91935 0.85659 0.98478 1.21905 1.01183 0.95759 1.00766 1.44184 1.72323 1.05099 1.09875 1.18826 1.05388 1.07996 1.06808 0.93206 1.26045 0.94588 1.02135 0.97115 1.70273 1.12885 1.22463 1.49132 0.85782 0.78760 0.79843 0.79183 1.20158 1.19472 1.22660 1.20970 0.94281 0.86025 0.94244 0.98514 1.21529 1.01185 0.98928 0.95793 1.21954 1.00060 0.95014 0.82510 1.26050 1.11531 0.97178 1.01514 1.21989 0.98792 1.02017 0.88078 1.66420 1.19054 1.02559 1.33069 1.29037 1.01578 0.97315 0.99058 1.84135 1.58273 1.03321 1.14101 0.93050 0.89421 0.91993 0.76171 0.89553 0.90754 0.91788 0.92505 0.93326 0.94018 0.92418 0.91512 0.94062 0.90064 0.91156 0.79405 0.75204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.47 71.98 0.68 -2.60 16 2 C 0.24 5.44 2.99 44.25 0.13 5.58 16 3 H 0.10 2.37 7.65 -2.39 -0.02 2.35 16 4 N -0.74 -19.53 4.98 -461.41 -2.30 -21.83 16 5 C 0.71 24.37 8.25 179.05 1.48 25.85 16 6 O -0.63 -25.13 15.41 -4.00 -0.06 -25.19 16 7 N -0.62 -21.94 2.95 -836.85 -2.47 -24.40 16 8 C 0.11 3.53 5.84 86.27 0.50 4.03 16 9 C 0.18 7.67 3.20 44.88 0.14 7.82 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.14 -5.60 7.81 71.98 0.56 -5.04 16 12 N -0.59 -27.46 2.75 -651.51 -1.79 -29.25 16 13 C -0.26 -12.97 6.60 84.03 0.55 -12.42 16 14 H 0.05 2.52 7.17 -2.91 -0.02 2.50 16 15 C 0.00 0.03 3.39 84.86 0.29 0.32 16 16 N -0.91 -49.72 11.52 21.65 0.25 -49.47 16 17 Si 0.94 41.12 29.60 68.60 2.03 43.15 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 21 C 0.15 6.44 3.65 45.03 0.16 6.61 16 22 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 23 C -0.12 -4.45 8.19 71.98 0.59 -3.86 16 24 C 0.13 4.76 5.92 86.42 0.51 5.27 16 25 C -0.24 -4.47 5.51 24.64 0.14 -4.34 16 26 C 0.04 0.78 11.24 83.65 0.94 1.72 16 27 N -0.50 -9.43 10.54 -203.75 -2.15 -11.58 16 28 C 0.03 0.38 12.23 130.65 1.60 1.97 16 29 S 0.15 2.24 22.27 -56.49 -1.26 0.98 16 30 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.40 9.43 5.21 -92.71 -0.48 8.95 16 34 H 0.09 2.31 5.61 -2.39 -0.01 2.29 16 35 H 0.07 2.37 8.11 -2.38 -0.02 2.35 16 36 H 0.06 3.03 4.93 -2.39 -0.01 3.02 16 37 H 0.06 1.85 8.13 -2.38 -0.02 1.83 16 38 H 0.05 1.99 7.49 -2.39 -0.02 1.97 16 39 H 0.25 13.39 8.32 -92.71 -0.77 12.62 16 40 H 0.06 2.12 7.48 -2.39 -0.02 2.11 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.04 1.76 7.71 -2.39 -0.02 1.75 16 43 H 0.08 3.01 6.99 -2.39 -0.02 2.99 16 44 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 45 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -65.20 373.44 1.05 -64.15 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.51 Total: 22.53 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 8.28 Total: 30.91 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -8.45 Total: -136.53 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.26 Total: 0.98 kcal Total: -65.20 1.05 -64.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898178593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.305 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds