Wall clock time and date at job start Tue Mar 31 2020 21:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47187 * 2 1 4 4 N 1.46502 * 109.46822 * 239.99902 * 2 1 3 5 5 C 1.34775 * 120.00150 * 85.00846 * 4 2 1 6 6 O 1.21587 * 119.99424 * 355.25842 * 5 4 2 7 7 N 1.34770 * 120.00040 * 175.26343 * 5 4 2 8 8 C 1.46961 * 120.59675 * 4.35480 * 7 5 4 9 9 C 1.53381 * 108.63286 * 235.20502 * 8 7 5 10 10 H 1.08995 * 109.74821 * 70.39779 * 9 8 7 11 11 C 1.52991 * 109.60789 * 190.82891 * 9 8 7 12 12 N 1.46967 * 108.63061 * 310.57055 * 9 8 7 13 13 C 1.36936 * 120.59175 * 235.20335 * 12 9 8 14 14 H 1.07996 * 119.99669 * 125.45171 * 13 12 9 15 15 C 1.38810 * 120.00044 * 305.44822 * 13 12 9 16 16 N 1.31625 * 120.00114 * 155.19681 * 15 13 12 17 17 Si 1.86806 * 120.00292 * 335.19728 * 15 13 12 18 18 H 1.48496 * 109.46873 * 92.92204 * 17 15 13 19 19 H 1.48491 * 109.47331 * 212.92687 * 17 15 13 20 20 H 1.48503 * 109.46739 * 332.92764 * 17 15 13 21 21 C 1.46961 * 118.81146 * 55.23344 * 12 9 8 22 22 H 1.09000 * 109.61319 * 184.85586 * 21 12 9 23 23 C 1.52998 * 109.61750 * 64.51102 * 21 12 9 24 24 C 1.46967 * 120.59179 * 184.32476 * 7 5 4 25 25 C 1.50700 * 109.46841 * 120.00278 * 2 1 3 26 26 C 1.33634 * 126.03857 * 259.99866 * 25 2 1 27 27 N 1.31786 * 114.50404 * 179.97438 * 26 25 2 28 28 C 1.29026 * 117.12400 * 0.02562 * 27 26 25 29 29 S 1.70982 * 110.16479 * 359.72017 * 28 27 26 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47114 * 300.00298 * 1 2 3 32 32 H 1.09003 * 109.47021 * 59.99841 * 1 2 3 33 33 H 0.97003 * 120.00116 * 265.00183 * 4 2 1 34 34 H 1.08998 * 109.61683 * 115.45652 * 8 7 5 35 35 H 1.08997 * 109.60930 * 354.94054 * 8 7 5 36 36 H 1.09001 * 109.47244 * 183.89856 * 11 9 8 37 37 H 1.09001 * 109.47600 * 63.89364 * 11 9 8 38 38 H 1.09008 * 109.47533 * 303.89619 * 11 9 8 39 39 H 0.96996 * 120.00081 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46515 * 59.99440 * 23 21 12 41 41 H 1.08995 * 109.47455 * 179.97438 * 23 21 12 42 42 H 1.09002 * 109.47029 * 300.00684 * 23 21 12 43 43 H 1.08999 * 109.61294 * 5.05794 * 24 7 5 44 44 H 1.09001 * 109.75336 * 244.62281 * 24 7 5 45 45 H 1.08005 * 122.74772 * 359.97438 * 26 25 2 46 46 H 1.08001 * 124.91861 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3571 6 8 1.7776 1.1374 -2.4345 7 7 2.6855 -0.6271 -3.4322 8 6 3.0487 -2.0502 -3.3822 9 6 4.5260 -2.1929 -3.7692 10 1 5.1552 -1.7892 -2.9760 11 6 4.8593 -3.6701 -3.9874 12 7 4.7598 -1.4456 -5.0129 13 6 5.3069 -2.0641 -6.1053 14 1 4.7973 -2.0296 -7.0568 15 6 6.5163 -2.7355 -5.9895 16 7 6.8127 -3.7067 -6.8269 17 14 7.7234 -2.2606 -4.6452 18 1 7.4922 -3.1104 -3.4496 19 1 9.1115 -2.4599 -5.1334 20 1 7.5257 -0.8338 -4.2840 21 6 4.3966 -0.0224 -5.0630 22 1 4.5515 0.3594 -6.0721 23 6 5.2638 0.7640 -4.0778 24 6 2.9193 0.1202 -4.6759 25 6 2.0323 -0.7105 1.2304 26 6 2.4713 -0.1283 2.3503 27 7 2.8580 -0.9694 3.2883 28 6 2.7701 -2.2288 3.0216 29 16 2.1375 -2.4557 1.4494 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6319 -1.1527 34 1 2.4309 -2.6105 -4.0840 35 1 2.8968 -2.4312 -2.3723 36 1 5.9243 -3.7756 -4.1943 37 1 4.2855 -4.0511 -4.8322 38 1 4.6055 -4.2361 -3.0910 39 1 7.6580 -4.1756 -6.7463 40 1 6.3140 0.6485 -4.3459 41 1 4.9928 1.8190 -4.1172 42 1 5.1027 0.3844 -3.0688 43 1 2.6820 1.1726 -4.5205 44 1 2.2922 -0.2827 -5.4713 45 1 2.5063 0.9438 2.4764 46 1 3.0512 -3.0245 3.6956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898178596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:58 Heat of formation + Delta-G solvation = 62.222228 kcal Electronic energy + Delta-G solvation = -28612.445849 eV Core-core repulsion = 24858.705754 eV Total energy + Delta-G solvation = -3753.740094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.41193 -39.82679 -37.89790 -35.84251 -34.21194 -33.09808 -31.67511 -31.25711 -29.18662 -28.36197 -26.40822 -25.94947 -25.57309 -23.50207 -22.74054 -21.24240 -20.85327 -19.91757 -18.83565 -18.51188 -17.90156 -16.52670 -16.21108 -15.76687 -15.45687 -15.04870 -14.92489 -14.67930 -14.27586 -14.17027 -13.95489 -13.77301 -13.60948 -13.35677 -12.95547 -12.66370 -12.46126 -12.32134 -12.22970 -11.91411 -11.69270 -11.62026 -11.49111 -11.27709 -11.03608 -10.61577 -10.59586 -10.29108 -10.12703 -9.99287 -9.86417 -9.68234 -9.65768 -9.56627 -9.35727 -9.13782 -8.56576 -8.14913 -6.53124 -6.13733 -3.69932 0.35390 0.98729 1.40282 2.47597 2.83354 3.26138 3.38820 3.41395 3.49026 3.97846 4.03140 4.35651 4.43245 4.78842 4.90804 4.96370 5.04994 5.14015 5.23469 5.40930 5.49917 5.54659 5.58767 5.69982 5.79448 5.81672 5.94604 5.99288 6.02457 6.17486 6.20698 6.28173 6.37875 6.42548 6.47255 6.55790 6.66345 6.80440 6.89481 7.03994 7.19074 7.30469 7.35793 7.99241 8.11068 8.45747 8.75801 8.93658 9.58281 10.14622 10.98699 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.003848 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.094652 B = 7274.041077 C = 8241.099433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.242 3.758 3 H 0.107 0.893 4 N -0.749 5.749 5 C 0.710 3.290 6 O -0.597 6.597 7 N -0.613 5.613 8 C 0.101 3.899 9 C 0.155 3.845 10 H 0.028 0.972 11 C -0.143 4.143 12 N -0.590 5.590 13 C -0.282 4.282 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.861 3.139 18 H -0.282 1.282 19 H -0.301 1.301 20 H -0.260 1.260 21 C 0.149 3.851 22 H 0.084 0.916 23 C -0.162 4.162 24 C 0.120 3.880 25 C -0.226 4.226 26 C 0.044 3.956 27 N -0.469 5.469 28 C 0.019 3.981 29 S 0.131 5.869 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.394 0.606 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.178 0.822 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 1.958 16.139 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.134 3.866 3 H 0.125 0.875 4 N -0.409 5.409 5 C 0.411 3.589 6 O -0.476 6.476 7 N -0.348 5.348 8 C -0.024 4.024 9 C 0.048 3.952 10 H 0.046 0.954 11 C -0.200 4.200 12 N -0.314 5.314 13 C -0.410 4.410 14 H 0.088 0.912 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.689 3.311 18 H -0.209 1.209 19 H -0.228 1.228 20 H -0.185 1.185 21 C 0.042 3.958 22 H 0.102 0.898 23 C -0.221 4.221 24 C -0.004 4.004 25 C -0.347 4.347 26 C -0.108 4.108 27 N -0.182 5.182 28 C -0.279 4.279 29 S 0.383 5.617 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.195 0.805 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.897 1.922 15.925 19.392 hybrid contribution 1.146 0.393 1.090 1.630 sum -9.751 2.315 17.015 19.747 Atomic orbital electron populations 1.22236 0.93813 1.02500 1.03194 1.18963 0.93884 0.95754 0.78011 0.87497 1.45484 1.72853 1.13684 1.08836 1.15756 0.78570 0.84446 0.80105 1.90867 1.56621 1.16358 1.83745 1.47149 1.64099 1.11134 1.12405 1.22325 0.99435 0.80817 0.99829 1.20964 0.91065 0.93278 0.89912 0.95430 1.22035 1.04135 0.93859 1.00009 1.44268 1.72752 1.03446 1.10935 1.18464 1.01426 1.31074 0.90030 0.91200 1.25872 0.96780 0.95702 0.95512 1.69932 1.23797 1.19812 1.38778 0.87378 0.80823 0.80489 0.82428 1.20899 1.22849 1.18463 1.21170 0.90438 0.86114 0.98080 0.89834 1.22284 1.01182 0.98538 1.00069 1.22093 0.98208 0.96389 0.83708 1.26268 1.10267 0.96138 1.02059 1.21767 0.99511 1.01290 0.88225 1.66350 1.17665 1.01666 1.32510 1.28444 1.03364 0.97189 0.98904 1.84096 1.58358 1.04741 1.14516 0.92415 0.91424 0.90683 0.76909 0.90863 0.92312 0.91040 0.90876 0.94758 0.92564 0.92417 0.93817 0.94031 0.89692 0.91846 0.80472 0.78282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.47 37.16 0.35 -1.20 16 2 C 0.24 2.69 3.00 -69.08 -0.21 2.48 16 3 H 0.11 1.30 7.64 -51.93 -0.40 0.90 16 4 N -0.75 -9.77 4.98 -59.82 -0.30 -10.07 16 5 C 0.71 11.63 8.26 -86.93 -0.72 10.91 16 6 O -0.60 -11.26 15.44 5.29 0.08 -11.18 16 7 N -0.61 -10.25 2.59 -178.21 -0.46 -10.71 16 8 C 0.10 1.62 5.90 -3.59 -0.02 1.60 16 9 C 0.15 3.03 2.09 -67.48 -0.14 2.89 16 10 H 0.03 0.58 7.01 -51.93 -0.36 0.21 16 11 C -0.14 -2.86 7.79 37.15 0.29 -2.57 16 12 N -0.59 -12.85 1.88 -157.02 -0.29 -13.15 16 13 C -0.28 -7.20 8.65 -15.06 -0.13 -7.34 16 14 H 0.07 1.97 8.06 -52.49 -0.42 1.55 16 15 C 0.06 1.72 3.77 -17.43 -0.07 1.65 16 16 N -0.89 -24.93 13.97 55.49 0.78 -24.15 16 17 Si 0.86 20.89 25.16 -169.99 -4.28 16.61 16 18 H -0.28 -6.67 6.48 56.52 0.37 -6.30 16 19 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.26 -6.27 5.28 56.52 0.30 -5.98 16 21 C 0.15 2.89 3.31 -67.48 -0.22 2.66 16 22 H 0.08 1.63 7.93 -51.93 -0.41 1.22 16 23 C -0.16 -3.07 9.13 37.16 0.34 -2.73 16 24 C 0.12 2.08 5.96 -3.59 -0.02 2.06 16 25 C -0.23 -2.26 5.51 -35.92 -0.20 -2.46 16 26 C 0.04 0.44 11.24 -19.18 -0.22 0.23 16 27 N -0.47 -5.08 10.54 -15.75 -0.17 -5.25 16 28 C 0.02 0.16 12.23 51.58 0.63 0.79 16 29 S 0.13 1.12 22.30 -107.50 -2.40 -1.28 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.39 4.70 5.20 -40.82 -0.21 4.49 16 34 H 0.07 1.19 8.12 -51.93 -0.42 0.76 16 35 H 0.06 0.78 5.55 -51.93 -0.29 0.50 16 36 H 0.07 1.64 3.19 -51.93 -0.17 1.47 16 37 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 38 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 1.19 6.32 -51.93 -0.33 0.86 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 43 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.18 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -30.51 366.03 -8.65 -39.15 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.79 Total: 5.54 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.33 Total: 8.97 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.45 Total: -63.33 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.28 Total: 16.61 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.40 Total: -1.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.51 -8.65 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898178596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.374 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds