Wall clock time and date at job start Tue Mar 31 2020 21:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47187 * 2 1 4 4 N 1.46502 * 109.46822 * 239.99902 * 2 1 3 5 5 C 1.34775 * 120.00150 * 85.00846 * 4 2 1 6 6 O 1.21587 * 119.99424 * 355.25842 * 5 4 2 7 7 N 1.34770 * 120.00040 * 175.26343 * 5 4 2 8 8 C 1.46961 * 120.59675 * 4.35480 * 7 5 4 9 9 C 1.53381 * 108.63286 * 235.20502 * 8 7 5 10 10 H 1.08995 * 109.74821 * 70.39779 * 9 8 7 11 11 C 1.52991 * 109.60789 * 190.82891 * 9 8 7 12 12 N 1.46967 * 108.63061 * 310.57055 * 9 8 7 13 13 C 1.36936 * 120.59175 * 235.20335 * 12 9 8 14 14 H 1.07996 * 119.99669 * 125.45171 * 13 12 9 15 15 C 1.38810 * 120.00044 * 305.44822 * 13 12 9 16 16 N 1.31625 * 120.00114 * 155.19681 * 15 13 12 17 17 Si 1.86806 * 120.00292 * 335.19728 * 15 13 12 18 18 H 1.48496 * 109.46873 * 92.92204 * 17 15 13 19 19 H 1.48491 * 109.47331 * 212.92687 * 17 15 13 20 20 H 1.48503 * 109.46739 * 332.92764 * 17 15 13 21 21 C 1.46961 * 118.81146 * 55.23344 * 12 9 8 22 22 H 1.09000 * 109.61319 * 184.85586 * 21 12 9 23 23 C 1.52998 * 109.61750 * 64.51102 * 21 12 9 24 24 C 1.46967 * 120.59179 * 184.32476 * 7 5 4 25 25 C 1.50700 * 109.46841 * 120.00278 * 2 1 3 26 26 C 1.33634 * 126.03857 * 259.99866 * 25 2 1 27 27 N 1.31786 * 114.50404 * 179.97438 * 26 25 2 28 28 C 1.29026 * 117.12400 * 0.02562 * 27 26 25 29 29 S 1.70982 * 110.16479 * 359.72017 * 28 27 26 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47114 * 300.00298 * 1 2 3 32 32 H 1.09003 * 109.47021 * 59.99841 * 1 2 3 33 33 H 0.97003 * 120.00116 * 265.00183 * 4 2 1 34 34 H 1.08998 * 109.61683 * 115.45652 * 8 7 5 35 35 H 1.08997 * 109.60930 * 354.94054 * 8 7 5 36 36 H 1.09001 * 109.47244 * 183.89856 * 11 9 8 37 37 H 1.09001 * 109.47600 * 63.89364 * 11 9 8 38 38 H 1.09008 * 109.47533 * 303.89619 * 11 9 8 39 39 H 0.96996 * 120.00081 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46515 * 59.99440 * 23 21 12 41 41 H 1.08995 * 109.47455 * 179.97438 * 23 21 12 42 42 H 1.09002 * 109.47029 * 300.00684 * 23 21 12 43 43 H 1.08999 * 109.61294 * 5.05794 * 24 7 5 44 44 H 1.09001 * 109.75336 * 244.62281 * 24 7 5 45 45 H 1.08005 * 122.74772 * 359.97438 * 26 25 2 46 46 H 1.08001 * 124.91861 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3571 6 8 1.7776 1.1374 -2.4345 7 7 2.6855 -0.6271 -3.4322 8 6 3.0487 -2.0502 -3.3822 9 6 4.5260 -2.1929 -3.7692 10 1 5.1552 -1.7892 -2.9760 11 6 4.8593 -3.6701 -3.9874 12 7 4.7598 -1.4456 -5.0129 13 6 5.3069 -2.0641 -6.1053 14 1 4.7973 -2.0296 -7.0568 15 6 6.5163 -2.7355 -5.9895 16 7 6.8127 -3.7067 -6.8269 17 14 7.7234 -2.2606 -4.6452 18 1 7.4922 -3.1104 -3.4496 19 1 9.1115 -2.4599 -5.1334 20 1 7.5257 -0.8338 -4.2840 21 6 4.3966 -0.0224 -5.0630 22 1 4.5515 0.3594 -6.0721 23 6 5.2638 0.7640 -4.0778 24 6 2.9193 0.1202 -4.6759 25 6 2.0323 -0.7105 1.2304 26 6 2.4713 -0.1283 2.3503 27 7 2.8580 -0.9694 3.2883 28 6 2.7701 -2.2288 3.0216 29 16 2.1375 -2.4557 1.4494 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6319 -1.1527 34 1 2.4309 -2.6105 -4.0840 35 1 2.8968 -2.4312 -2.3723 36 1 5.9243 -3.7756 -4.1943 37 1 4.2855 -4.0511 -4.8322 38 1 4.6055 -4.2361 -3.0910 39 1 7.6580 -4.1756 -6.7463 40 1 6.3140 0.6485 -4.3459 41 1 4.9928 1.8190 -4.1172 42 1 5.1027 0.3844 -3.0688 43 1 2.6820 1.1726 -4.5205 44 1 2.2922 -0.2827 -5.4713 45 1 2.5063 0.9438 2.4764 46 1 3.0512 -3.0245 3.6956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898178596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:57 Heat of formation + Delta-G solvation = 42.788802 kcal Electronic energy + Delta-G solvation = -28613.288545 eV Core-core repulsion = 24858.705754 eV Total energy + Delta-G solvation = -3754.582791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63145 -40.64193 -39.34720 -36.93613 -35.79217 -34.59225 -33.51065 -32.33399 -30.16345 -29.86844 -27.85998 -27.25126 -26.48046 -25.20585 -23.76595 -22.73633 -21.79371 -21.06965 -20.21552 -19.73839 -18.98746 -18.19913 -17.44567 -16.91952 -16.64287 -16.52157 -16.34223 -15.62416 -15.48339 -15.37059 -15.13664 -15.04907 -14.88409 -14.49278 -14.42405 -14.21576 -13.94650 -13.75215 -13.31820 -13.22042 -13.06859 -12.83567 -12.71185 -12.63679 -12.39651 -12.22379 -12.17785 -11.90819 -11.73246 -11.60080 -11.43537 -11.13829 -10.70256 -10.52485 -10.42625 -10.24785 -9.94529 -9.61888 -8.34533 -8.17248 -5.73412 -0.33404 0.31380 0.72070 1.31279 1.42905 1.53067 1.54990 1.85789 2.11847 2.42755 2.81118 3.03657 3.29770 3.35058 3.62522 4.03997 4.05197 4.11797 4.19056 4.23669 4.33418 4.36194 4.46533 4.48516 4.52064 4.63745 4.67665 4.74822 4.80119 4.85727 4.88354 4.97457 5.04368 5.11110 5.14317 5.21563 5.26226 5.34377 5.42245 5.53071 5.66941 5.91358 6.01766 6.37091 6.67636 6.88364 7.11007 7.49632 7.61037 8.20826 8.96392 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.003848 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.094652 B = 7274.041077 C = 8241.099433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.243 3.757 3 H 0.095 0.905 4 N -0.738 5.738 5 C 0.710 3.290 6 O -0.622 6.622 7 N -0.617 5.617 8 C 0.111 3.889 9 C 0.151 3.849 10 H 0.024 0.976 11 C -0.138 4.138 12 N -0.599 5.599 13 C -0.267 4.267 14 H 0.034 0.966 15 C 0.032 3.968 16 N -0.927 5.927 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.313 1.313 20 H -0.258 1.258 21 C 0.145 3.855 22 H 0.076 0.924 23 C -0.149 4.149 24 C 0.131 3.869 25 C -0.241 4.241 26 C 0.039 3.961 27 N -0.500 5.500 28 C 0.023 3.977 29 S 0.156 5.844 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.263 0.737 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.187 0.813 46 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 1.706 18.849 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.136 3.864 3 H 0.112 0.888 4 N -0.397 5.397 5 C 0.412 3.588 6 O -0.503 6.503 7 N -0.352 5.352 8 C -0.014 4.014 9 C 0.045 3.955 10 H 0.041 0.959 11 C -0.196 4.196 12 N -0.324 5.324 13 C -0.396 4.396 14 H 0.051 0.949 15 C -0.168 4.168 16 N -0.568 5.568 17 Si 0.736 3.264 18 H -0.195 1.195 19 H -0.241 1.241 20 H -0.183 1.183 21 C 0.039 3.961 22 H 0.094 0.906 23 C -0.208 4.208 24 C 0.006 3.994 25 C -0.363 4.363 26 C -0.112 4.112 27 N -0.213 5.213 28 C -0.273 4.273 29 S 0.409 5.591 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.204 0.796 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.935 1.666 18.685 22.234 hybrid contribution 1.401 0.460 0.273 1.499 sum -10.534 2.126 18.958 21.792 Atomic orbital electron populations 1.22160 0.92764 1.02997 1.03075 1.18979 0.94624 0.95134 0.77645 0.88753 1.45434 1.72027 1.13876 1.08354 1.15828 0.78296 0.84164 0.80555 1.90853 1.57679 1.17598 1.84212 1.47140 1.64370 1.11302 1.12383 1.22194 0.96622 0.80677 1.01868 1.21043 0.93394 0.92594 0.88457 0.95866 1.21950 1.01780 0.94708 1.01151 1.44353 1.72742 1.04644 1.10692 1.18224 1.00961 1.30401 0.90055 0.94866 1.26210 0.97828 0.95675 0.97074 1.70018 1.24271 1.21450 1.41048 0.86612 0.78444 0.80305 0.81018 1.19473 1.24147 1.18279 1.21233 0.92007 0.84779 0.98126 0.90559 1.22140 0.99720 0.99688 0.99295 1.21867 0.96417 0.96821 0.84284 1.26110 1.11356 0.97270 1.01545 1.21979 0.99067 1.01956 0.88228 1.66406 1.19087 1.02624 1.33187 1.29021 1.01730 0.97271 0.99319 1.83978 1.57789 1.03108 1.14257 0.91560 0.89777 0.92540 0.76149 0.90675 0.88867 0.93961 0.92877 0.90682 0.92725 0.94325 0.91792 0.94503 0.89324 0.91703 0.79647 0.75372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.47 71.98 0.68 -1.96 16 2 C 0.24 4.89 3.00 44.25 0.13 5.03 16 3 H 0.09 2.16 7.64 -2.39 -0.02 2.14 16 4 N -0.74 -17.31 4.98 -461.42 -2.30 -19.60 16 5 C 0.71 21.73 8.26 179.06 1.48 23.21 16 6 O -0.62 -22.52 15.44 -3.99 -0.06 -22.58 16 7 N -0.62 -19.31 2.59 -835.99 -2.17 -21.48 16 8 C 0.11 3.26 5.90 86.42 0.51 3.77 16 9 C 0.15 5.63 2.09 45.03 0.09 5.73 16 10 H 0.02 0.91 7.01 -2.39 -0.02 0.90 16 11 C -0.14 -5.31 7.79 71.98 0.56 -4.75 16 12 N -0.60 -25.83 1.88 -650.70 -1.22 -27.05 16 13 C -0.27 -13.90 8.65 84.03 0.73 -13.17 16 14 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 15 C 0.03 1.73 3.77 84.86 0.32 2.05 16 16 N -0.93 -53.51 13.97 21.65 0.30 -53.21 16 17 Si 0.91 43.25 25.16 68.60 1.73 44.97 16 18 H -0.27 -12.10 6.48 99.48 0.64 -11.46 16 19 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 20 H -0.26 -12.11 5.28 99.48 0.53 -11.58 16 21 C 0.15 5.51 3.31 45.03 0.15 5.66 16 22 H 0.08 2.98 7.93 -2.39 -0.02 2.96 16 23 C -0.15 -5.48 9.13 71.98 0.66 -4.82 16 24 C 0.13 4.36 5.96 86.42 0.51 4.87 16 25 C -0.24 -4.24 5.51 24.64 0.14 -4.10 16 26 C 0.04 0.72 11.24 83.65 0.94 1.66 16 27 N -0.50 -9.65 10.54 -203.74 -2.15 -11.80 16 28 C 0.02 0.33 12.23 130.65 1.60 1.93 16 29 S 0.16 2.16 22.30 -56.49 -1.26 0.90 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.40 8.16 5.20 -92.71 -0.48 7.67 16 34 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 35 H 0.09 2.10 5.55 -2.39 -0.01 2.09 16 36 H 0.04 1.88 3.19 -2.39 -0.01 1.87 16 37 H 0.05 2.23 7.71 -2.39 -0.02 2.21 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.04 1.54 6.32 -2.39 -0.02 1.53 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.36 7.02 -2.39 -0.02 1.35 16 43 H 0.09 2.93 6.99 -2.39 -0.02 2.91 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 46 H 0.23 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -66.49 366.03 1.65 -64.84 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.28 Total: 19.90 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 8.50 Total: 25.11 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -7.53 Total: -133.14 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.73 Total: 44.97 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.26 Total: 0.90 kcal Total: -66.49 1.65 -64.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898178596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.629 kcal (2) G-P(sol) polarization free energy of solvation -66.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds