Wall clock time and date at job start Tue Mar 31 2020 21:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46650 * 2 1 4 4 C 1.50702 * 109.47187 * 239.99953 * 2 1 3 5 5 C 1.38244 * 119.98663 * 286.42866 * 4 2 1 6 6 C 1.38213 * 120.00866 * 179.72888 * 5 4 2 7 7 C 1.38344 * 119.99092 * 0.54571 * 6 5 4 8 8 Cl 1.73595 * 120.01676 * 179.70587 * 7 6 5 9 9 C 1.38353 * 119.97205 * 359.72954 * 7 6 5 10 10 C 1.38216 * 119.98840 * 359.97438 * 9 7 6 11 11 N 1.46903 * 109.47315 * 119.99760 * 2 1 3 12 12 C 1.46954 * 110.99767 * 300.43137 * 11 2 1 13 13 C 1.53049 * 109.36532 * 176.81044 * 12 11 2 14 14 N 1.46961 * 109.36260 * 58.39846 * 13 12 11 15 15 C 1.46902 * 110.99761 * 176.81637 * 14 13 12 16 16 C 1.53001 * 109.46933 * 293.79349 * 15 14 13 17 17 H 1.09005 * 109.47052 * 60.00581 * 16 15 14 18 18 O 1.42891 * 109.47536 * 300.00452 * 16 15 14 19 19 C 1.50703 * 109.47011 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99820 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00055 * 180.02562 * 19 16 15 22 22 N 1.31522 * 120.00082 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00397 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.46887 * 59.99936 * 23 21 19 25 25 H 1.48498 * 109.47398 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46861 * 300.00392 * 23 21 19 27 27 C 1.46955 * 110.87994 * 300.67870 * 14 13 12 28 28 C 1.46954 * 111.00161 * 176.62687 * 11 2 1 29 29 H 1.09004 * 109.46650 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47477 * 299.99983 * 1 2 3 31 31 H 1.08998 * 109.47441 * 60.00529 * 1 2 3 32 32 H 1.08002 * 119.99042 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.00003 * 180.27532 * 6 5 4 34 34 H 1.08004 * 120.00992 * 179.97438 * 9 7 6 35 35 H 1.08000 * 119.99364 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.49045 * 296.77479 * 12 11 2 37 37 H 1.09003 * 109.49423 * 56.84345 * 12 11 2 38 38 H 1.09003 * 109.48651 * 298.43430 * 13 12 11 39 39 H 1.09003 * 109.49447 * 178.36593 * 13 12 11 40 40 H 1.08999 * 109.47482 * 53.79719 * 15 14 13 41 41 H 1.08999 * 109.46993 * 173.80146 * 15 14 13 42 42 H 0.96704 * 114.00275 * 299.99526 * 18 16 15 43 43 H 0.96992 * 120.00059 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.49391 * 299.35646 * 27 14 13 45 45 H 1.09003 * 109.49098 * 179.28766 * 27 14 13 46 46 H 1.08993 * 109.48781 * 303.16026 * 28 11 2 47 47 H 1.09005 * 109.48680 * 63.20078 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.9434 -2.0872 -1.3181 6 6 2.3989 -2.7387 -2.4488 7 6 2.9542 -2.0139 -3.4881 8 17 3.5334 -2.8323 -4.9052 9 6 3.0481 -0.6366 -3.3974 10 6 2.5867 0.0145 -2.2688 11 7 2.0197 -0.6924 1.1995 12 6 1.5401 -0.0320 2.4215 13 6 2.0046 -0.8273 3.6439 14 7 3.4714 -0.9171 3.6382 15 6 3.9611 -1.6096 4.8376 16 6 3.6565 -0.7632 6.0752 17 1 2.5799 -0.6128 6.1566 18 8 4.3068 0.5037 5.9578 19 6 4.1593 -1.4733 7.3057 20 1 4.6477 -2.4322 7.2140 21 6 3.9959 -0.8988 8.5484 22 7 3.4007 0.2687 8.6600 23 14 4.6198 -1.7786 10.0735 24 1 6.0866 -1.9819 9.9624 25 1 4.3230 -0.9577 11.2748 26 1 3.9454 -3.0959 10.1957 27 6 3.9510 -1.5776 2.4161 28 6 3.4865 -0.7823 1.1937 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.5136 -2.6533 -0.5050 33 1 2.3252 -3.8139 -2.5189 34 1 3.4819 -0.0702 -4.2082 35 1 2.6604 1.0896 -2.1978 36 1 1.9439 0.9793 2.4708 37 1 0.4510 0.0112 2.4081 38 1 1.5787 -1.8300 3.6086 39 1 1.6747 -0.3235 4.5524 40 1 3.4650 -2.5760 4.9273 41 1 5.0376 -1.7599 4.7563 42 1 5.2691 0.4463 5.8813 43 1 3.2854 0.6726 9.5342 44 1 3.5472 -2.5889 2.3669 45 1 5.0400 -1.6208 2.4295 46 1 3.8164 -1.2861 0.2853 47 1 3.9124 0.2204 1.2286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929720315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:05 Heat of formation + Delta-G solvation = -18.616800 kcal Electronic energy + Delta-G solvation = -27214.385494 eV Core-core repulsion = 23422.803499 eV Total energy + Delta-G solvation = -3791.581995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24669 -38.78194 -36.97117 -36.27611 -34.74276 -32.12678 -31.97110 -31.34006 -30.96253 -29.25973 -28.36189 -25.97529 -24.14542 -23.50366 -23.22150 -22.52839 -20.73611 -20.21792 -19.39338 -17.42902 -17.08704 -16.37235 -15.92558 -15.21662 -14.82369 -14.71805 -14.65966 -14.44573 -14.42445 -14.09216 -13.85235 -13.73938 -13.60815 -13.50686 -12.99417 -12.84041 -12.47219 -12.32706 -12.02750 -11.76857 -11.63508 -11.49239 -11.31786 -11.12647 -11.05885 -10.98818 -10.92488 -10.87124 -10.74909 -10.45143 -10.30079 -9.99952 -9.30265 -8.96650 -8.82531 -8.55042 -8.35975 -8.07388 -7.61546 -5.99406 -4.17652 0.84287 1.03049 1.85138 3.29135 3.32178 3.34515 3.36158 3.82825 4.32586 4.39345 4.51765 4.52637 4.61926 4.99396 5.00929 5.06468 5.11559 5.20853 5.28038 5.33118 5.39705 5.50161 5.52349 5.58235 5.60545 5.68323 5.70792 5.80855 5.92960 5.95730 5.97348 6.03105 6.10730 6.15045 6.24990 6.28063 6.35685 6.40113 6.52547 6.58960 6.82921 7.04756 7.07666 7.56368 7.65117 7.79437 7.89527 8.21930 8.86093 9.47550 9.63908 11.04647 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002139 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.547725 B =13089.804455 C =13695.326801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.118 3.882 3 H 0.050 0.950 4 C -0.068 4.068 5 C -0.078 4.078 6 C -0.114 4.114 7 C -0.037 4.037 8 Cl -0.078 7.078 9 C -0.112 4.112 10 C -0.104 4.104 11 N -0.532 5.532 12 C 0.058 3.942 13 C 0.060 3.940 14 N -0.528 5.528 15 C 0.032 3.968 16 C 0.238 3.762 17 H 0.054 0.946 18 O -0.554 6.554 19 C -0.574 4.574 20 H 0.053 0.947 21 C 0.080 3.920 22 N -0.859 5.859 23 Si 0.889 3.111 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.057 3.943 28 C 0.060 3.940 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.062 0.938 42 H 0.342 0.658 43 H 0.261 0.739 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -2.231 -24.760 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.068 0.932 4 C -0.069 4.069 5 C -0.097 4.097 6 C -0.133 4.133 7 C -0.064 4.064 8 Cl -0.049 7.049 9 C -0.131 4.131 10 C -0.123 4.123 11 N -0.257 5.257 12 C -0.070 4.070 13 C -0.069 4.069 14 N -0.253 5.253 15 C -0.096 4.096 16 C 0.180 3.820 17 H 0.071 0.929 18 O -0.356 6.356 19 C -0.613 4.613 20 H 0.072 0.928 21 C -0.126 4.126 22 N -0.494 5.494 23 Si 0.716 3.284 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.072 4.072 28 C -0.068 4.068 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.185 0.815 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.664 -1.932 -24.711 25.221 hybrid contribution 1.054 -0.911 0.711 1.564 sum -3.610 -2.844 -23.999 24.435 Atomic orbital electron populations 1.21888 0.93194 1.02943 1.01984 1.20547 0.95835 0.94953 0.87658 0.93186 1.19921 0.97649 0.94103 0.95209 1.21054 0.97853 0.93971 0.96793 1.21106 0.99077 1.00428 0.92665 1.20948 1.02648 0.92929 0.89872 1.98368 1.87528 1.79320 1.39685 1.20979 1.00892 0.92297 0.98951 1.21024 0.98244 1.00142 0.92888 1.62254 1.10345 1.51827 1.01300 1.22244 0.99641 0.96530 0.88593 1.22131 0.88331 0.98713 0.97678 1.62189 1.09207 1.52189 1.01675 1.23062 0.99087 0.96143 0.91260 1.19304 0.94050 0.80969 0.87704 0.92862 1.86550 1.20995 1.31905 1.96157 1.21624 1.41479 1.06014 0.92169 0.92840 1.25019 0.94220 0.94508 0.98882 1.70069 1.40245 1.15344 1.23787 0.86740 0.79465 0.79677 0.82491 1.20160 1.21210 1.20228 1.22110 0.99549 0.95538 0.89961 1.22143 0.86927 0.99657 0.98036 0.91550 0.91669 0.92206 0.84267 0.85064 0.85118 0.85276 0.93780 0.90296 0.94918 0.89295 0.95568 0.91964 0.81487 0.92967 0.94930 0.90940 0.90857 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.88 37.16 0.33 -0.91 16 2 C 0.12 1.17 2.27 -68.86 -0.16 1.02 16 3 H 0.05 0.51 7.94 -51.93 -0.41 0.10 16 4 C -0.07 -0.64 3.53 -104.62 -0.37 -1.01 16 5 C -0.08 -0.74 8.45 -39.59 -0.33 -1.07 16 6 C -0.11 -1.03 9.83 -39.55 -0.39 -1.41 16 7 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 8 Cl -0.08 -0.68 28.96 -51.86 -1.50 -2.18 16 9 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 10 C -0.10 -0.89 9.67 -39.59 -0.38 -1.27 16 11 N -0.53 -6.41 4.10 -227.87 -0.94 -7.34 16 12 C 0.06 0.78 5.31 -3.77 -0.02 0.76 16 13 C 0.06 1.00 5.41 -3.76 -0.02 0.98 16 14 N -0.53 -9.47 4.58 -234.46 -1.07 -10.54 16 15 C 0.03 0.66 4.56 -3.82 -0.02 0.64 16 16 C 0.24 5.95 2.70 -27.88 -0.08 5.88 16 17 H 0.05 1.46 6.49 -51.93 -0.34 1.12 16 18 O -0.55 -14.37 12.60 -35.23 -0.44 -14.82 16 19 C -0.57 -15.67 8.76 -34.44 -0.30 -15.97 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 22 N -0.86 -25.29 12.84 55.43 0.71 -24.57 16 23 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.06 0.85 5.61 -3.77 -0.02 0.83 16 28 C 0.06 0.78 5.27 -3.77 -0.02 0.76 16 29 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.06 0.57 6.33 -51.93 -0.33 0.24 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 1.34 7.92 -52.49 -0.42 0.92 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.13 0.90 7.99 -52.49 -0.42 0.48 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.94 6.13 -51.93 -0.32 0.62 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.69 6.34 -51.93 -0.33 1.37 16 40 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 42 H 0.34 8.03 9.04 45.56 0.41 8.44 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 46 H 0.07 0.88 6.37 -51.93 -0.33 0.55 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -29.77 385.42 -11.62 -41.39 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.66 Total: 6.75 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.51 Total: -10.57 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -1.30 Total: -42.45 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.44 Total: -14.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.77 -11.62 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929720315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.778 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds