Wall clock time and date at job start Tue Mar 31 2020 21:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46650 * 2 1 4 4 C 1.50702 * 109.47187 * 239.99953 * 2 1 3 5 5 C 1.38244 * 119.98663 * 286.42866 * 4 2 1 6 6 C 1.38213 * 120.00866 * 179.72888 * 5 4 2 7 7 C 1.38344 * 119.99092 * 0.54571 * 6 5 4 8 8 Cl 1.73595 * 120.01676 * 179.70587 * 7 6 5 9 9 C 1.38353 * 119.97205 * 359.72954 * 7 6 5 10 10 C 1.38216 * 119.98840 * 359.97438 * 9 7 6 11 11 N 1.46903 * 109.47315 * 119.99760 * 2 1 3 12 12 C 1.46954 * 110.99767 * 300.43137 * 11 2 1 13 13 C 1.53049 * 109.36532 * 176.81044 * 12 11 2 14 14 N 1.46961 * 109.36260 * 58.39846 * 13 12 11 15 15 C 1.46902 * 110.99761 * 176.81637 * 14 13 12 16 16 C 1.53001 * 109.46933 * 293.79349 * 15 14 13 17 17 H 1.09005 * 109.47052 * 60.00581 * 16 15 14 18 18 O 1.42891 * 109.47536 * 300.00452 * 16 15 14 19 19 C 1.50703 * 109.47011 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99820 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00055 * 180.02562 * 19 16 15 22 22 N 1.31522 * 120.00082 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 120.00397 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.46887 * 59.99936 * 23 21 19 25 25 H 1.48498 * 109.47398 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46861 * 300.00392 * 23 21 19 27 27 C 1.46955 * 110.87994 * 300.67870 * 14 13 12 28 28 C 1.46954 * 111.00161 * 176.62687 * 11 2 1 29 29 H 1.09004 * 109.46650 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47477 * 299.99983 * 1 2 3 31 31 H 1.08998 * 109.47441 * 60.00529 * 1 2 3 32 32 H 1.08002 * 119.99042 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.00003 * 180.27532 * 6 5 4 34 34 H 1.08004 * 120.00992 * 179.97438 * 9 7 6 35 35 H 1.08000 * 119.99364 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.49045 * 296.77479 * 12 11 2 37 37 H 1.09003 * 109.49423 * 56.84345 * 12 11 2 38 38 H 1.09003 * 109.48651 * 298.43430 * 13 12 11 39 39 H 1.09003 * 109.49447 * 178.36593 * 13 12 11 40 40 H 1.08999 * 109.47482 * 53.79719 * 15 14 13 41 41 H 1.08999 * 109.46993 * 173.80146 * 15 14 13 42 42 H 0.96704 * 114.00275 * 299.99526 * 18 16 15 43 43 H 0.96992 * 120.00059 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.49391 * 299.35646 * 27 14 13 45 45 H 1.09003 * 109.49098 * 179.28766 * 27 14 13 46 46 H 1.08993 * 109.48781 * 303.16026 * 28 11 2 47 47 H 1.09005 * 109.48680 * 63.20078 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.9434 -2.0872 -1.3181 6 6 2.3989 -2.7387 -2.4488 7 6 2.9542 -2.0139 -3.4881 8 17 3.5334 -2.8323 -4.9052 9 6 3.0481 -0.6366 -3.3974 10 6 2.5867 0.0145 -2.2688 11 7 2.0197 -0.6924 1.1995 12 6 1.5401 -0.0320 2.4215 13 6 2.0046 -0.8273 3.6439 14 7 3.4714 -0.9171 3.6382 15 6 3.9611 -1.6096 4.8376 16 6 3.6565 -0.7632 6.0752 17 1 2.5799 -0.6128 6.1566 18 8 4.3068 0.5037 5.9578 19 6 4.1593 -1.4733 7.3057 20 1 4.6477 -2.4322 7.2140 21 6 3.9959 -0.8988 8.5484 22 7 3.4007 0.2687 8.6600 23 14 4.6198 -1.7786 10.0735 24 1 6.0866 -1.9819 9.9624 25 1 4.3230 -0.9577 11.2748 26 1 3.9454 -3.0959 10.1957 27 6 3.9510 -1.5776 2.4161 28 6 3.4865 -0.7823 1.1937 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.5136 -2.6533 -0.5050 33 1 2.3252 -3.8139 -2.5189 34 1 3.4819 -0.0702 -4.2082 35 1 2.6604 1.0896 -2.1978 36 1 1.9439 0.9793 2.4708 37 1 0.4510 0.0112 2.4081 38 1 1.5787 -1.8300 3.6086 39 1 1.6747 -0.3235 4.5524 40 1 3.4650 -2.5760 4.9273 41 1 5.0376 -1.7599 4.7563 42 1 5.2691 0.4463 5.8813 43 1 3.2854 0.6726 9.5342 44 1 3.5472 -2.5889 2.3669 45 1 5.0400 -1.6208 2.4295 46 1 3.8164 -1.2861 0.2853 47 1 3.9124 0.2204 1.2286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929720315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:04 Heat of formation + Delta-G solvation = -38.135955 kcal Electronic energy + Delta-G solvation = -27215.231908 eV Core-core repulsion = 23422.803499 eV Total energy + Delta-G solvation = -3792.428409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09972 -39.84814 -38.12196 -37.36668 -36.22027 -34.20448 -33.08673 -32.12940 -31.97587 -30.37741 -29.77363 -27.52822 -25.41607 -24.90110 -23.97704 -23.43372 -22.19925 -21.37386 -20.59595 -19.07571 -18.10738 -17.43405 -16.72536 -16.66520 -16.50136 -16.12747 -15.95608 -15.71648 -15.49245 -15.40539 -15.05709 -14.94287 -14.49074 -14.36338 -14.30401 -14.13368 -13.60162 -13.35523 -13.12561 -12.95140 -12.81038 -12.73661 -12.65180 -12.49548 -12.42515 -12.24453 -12.18706 -12.09615 -11.96846 -11.74292 -11.59166 -11.49551 -10.93812 -10.66884 -10.08257 -9.96071 -9.51980 -9.36592 -9.08941 -8.11970 -6.37817 0.15344 0.37192 1.18148 1.41215 1.42696 1.50826 2.39109 2.60609 2.90007 3.05449 3.14411 3.63630 3.86338 3.92806 4.00079 4.10448 4.16723 4.24415 4.28830 4.32396 4.42312 4.45613 4.50186 4.54089 4.57605 4.61408 4.70583 4.73808 4.82212 4.84762 4.94062 4.97926 5.00250 5.05824 5.07007 5.14664 5.27399 5.30859 5.34647 5.57547 5.61512 5.76764 5.85170 5.98094 6.01775 6.12547 6.25788 6.32531 6.75359 7.36124 7.63488 8.92137 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002139 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.547725 B =13089.804455 C =13695.326801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.121 3.879 3 H 0.052 0.948 4 C -0.075 4.075 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.046 4.046 8 Cl -0.077 7.077 9 C -0.114 4.114 10 C -0.104 4.104 11 N -0.530 5.530 12 C 0.069 3.931 13 C 0.062 3.938 14 N -0.539 5.539 15 C 0.050 3.950 16 C 0.239 3.761 17 H 0.021 0.979 18 O -0.570 6.570 19 C -0.589 4.589 20 H 0.058 0.942 21 C 0.026 3.974 22 N -0.898 5.898 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.058 3.942 28 C 0.070 3.930 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.351 0.649 43 H 0.261 0.739 44 H 0.034 0.966 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -2.824 -26.161 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.070 0.930 4 C -0.075 4.075 5 C -0.102 4.102 6 C -0.137 4.137 7 C -0.073 4.073 8 Cl -0.049 7.049 9 C -0.132 4.132 10 C -0.123 4.123 11 N -0.256 5.256 12 C -0.059 4.059 13 C -0.066 4.066 14 N -0.263 5.263 15 C -0.078 4.078 16 C 0.181 3.819 17 H 0.039 0.961 18 O -0.373 6.373 19 C -0.627 4.627 20 H 0.076 0.924 21 C -0.176 4.176 22 N -0.535 5.535 23 Si 0.784 3.216 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.070 4.070 28 C -0.058 4.058 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.086 0.914 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.238 -2.540 -26.139 26.601 hybrid contribution 0.909 -0.718 1.068 1.575 sum -3.329 -3.257 -25.071 25.500 Atomic orbital electron populations 1.21870 0.92184 1.02999 1.02626 1.20585 0.96608 0.94773 0.86750 0.93048 1.19896 0.98271 0.94123 0.95227 1.21043 0.98193 0.94062 0.96902 1.21222 0.98943 1.01000 0.92534 1.21094 1.02827 0.93369 0.89973 1.98369 1.87514 1.79363 1.39613 1.21192 1.00502 0.92184 0.99356 1.21205 0.97587 1.00976 0.92492 1.62244 1.09813 1.52016 1.01495 1.22092 1.00652 0.95127 0.88037 1.22062 0.87773 0.98782 0.98012 1.62125 1.09911 1.52415 1.01885 1.22654 0.99392 0.94974 0.90753 1.19152 0.92138 0.81120 0.89474 0.96119 1.86497 1.21846 1.32609 1.96321 1.22023 1.41151 1.06246 0.93292 0.92419 1.25886 0.94341 0.95180 1.02230 1.70213 1.41737 1.17064 1.24515 0.85624 0.79177 0.78520 0.78310 1.19202 1.21031 1.19414 1.22177 0.99952 0.95668 0.89195 1.22033 0.87412 0.98879 0.97451 0.91769 0.91793 0.90806 0.84665 0.84213 0.83611 0.83700 0.95047 0.88392 0.94964 0.92437 0.95951 0.91363 0.80442 0.93020 0.94815 0.90311 0.89356 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.88 71.98 0.64 -1.51 16 2 C 0.12 2.16 2.27 44.17 0.10 2.26 16 3 H 0.05 0.94 7.94 -2.38 -0.02 0.92 16 4 C -0.07 -1.25 3.53 -19.86 -0.07 -1.32 16 5 C -0.08 -1.43 8.45 22.27 0.19 -1.24 16 6 C -0.12 -1.93 9.83 22.29 0.22 -1.71 16 7 C -0.05 -0.75 6.32 22.32 0.14 -0.61 16 8 Cl -0.08 -1.24 28.96 -2.72 -0.08 -1.31 16 9 C -0.11 -1.67 9.83 22.29 0.22 -1.45 16 10 C -0.10 -1.52 9.67 22.27 0.22 -1.31 16 11 N -0.53 -12.06 4.10 -874.86 -3.59 -15.65 16 12 C 0.07 1.84 5.31 86.31 0.46 2.30 16 13 C 0.06 2.12 5.41 86.31 0.47 2.59 16 14 N -0.54 -19.37 4.58 -895.69 -4.10 -23.47 16 15 C 0.05 2.08 4.56 86.30 0.39 2.48 16 16 C 0.24 12.30 2.70 29.85 0.08 12.38 16 17 H 0.02 1.21 6.49 -2.38 -0.02 1.19 16 18 O -0.57 -30.23 12.60 -148.98 -1.88 -32.11 16 19 C -0.59 -32.43 8.76 25.60 0.22 -32.21 16 20 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 21 C 0.03 1.47 5.40 84.65 0.46 1.92 16 22 N -0.90 -53.91 12.84 21.45 0.28 -53.64 16 23 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.06 1.68 5.61 86.31 0.48 2.16 16 28 C 0.07 1.71 5.27 86.31 0.45 2.16 16 29 H 0.06 1.03 8.07 -2.38 -0.02 1.01 16 30 H 0.06 1.00 6.33 -2.39 -0.02 0.98 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.14 2.41 7.92 -2.91 -0.02 2.38 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.15 1.62 7.99 -2.91 -0.02 1.60 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 2.24 6.13 -2.39 -0.01 2.22 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 2.32 6.34 -2.39 -0.02 2.30 16 40 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 41 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 42 H 0.35 16.75 9.04 -74.05 -0.67 16.08 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 46 H 0.09 1.92 6.37 -2.39 -0.02 1.91 16 47 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -63.78 385.42 -2.38 -66.16 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.30 Total: 27.75 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.67 Total: -13.10 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -7.41 Total: -92.76 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.88 Total: -32.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -63.78 -2.38 -66.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929720315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.019 kcal (2) G-P(sol) polarization free energy of solvation -63.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds