Wall clock time and date at job start Tue Mar 31 2020 20:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99775 * 2 1 4 4 H 1.09004 * 112.90955 * 21.74154 * 3 2 1 5 5 C 1.53787 * 113.61435 * 250.49176 * 3 2 1 6 6 H 1.08998 * 113.61447 * 156.24913 * 5 3 2 7 7 C 1.53000 * 113.60890 * 25.43452 * 5 3 2 8 8 C 1.53779 * 87.07963 * 270.88419 * 5 3 2 9 9 H 1.08999 * 113.61062 * 219.93155 * 8 5 3 10 10 N 1.46502 * 113.61301 * 89.11687 * 8 5 3 11 11 C 1.34779 * 119.99983 * 104.50680 * 10 8 5 12 12 O 1.21579 * 120.00257 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99748 * 179.97438 * 11 10 8 14 14 C 1.46496 * 120.00014 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47420 * 35.00215 * 14 13 11 16 16 C 1.50705 * 109.47362 * 154.99745 * 14 13 11 17 17 H 1.07999 * 119.99772 * 0.02562 * 16 14 13 18 18 C 1.37879 * 120.00091 * 180.02562 * 16 14 13 19 19 N 1.31512 * 120.00120 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99760 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46809 * 90.00495 * 20 18 16 22 22 H 1.48502 * 109.46941 * 209.99910 * 20 18 16 23 23 H 1.48493 * 109.47299 * 330.00071 * 20 18 16 24 24 C 1.53002 * 109.47257 * 275.00022 * 14 13 11 25 25 F 1.39897 * 109.47074 * 60.00156 * 24 14 13 26 26 F 1.39901 * 109.47054 * 180.02562 * 24 14 13 27 27 F 1.39903 * 109.47100 * 299.99919 * 24 14 13 28 28 C 1.53779 * 87.08402 * 334.56577 * 8 5 3 29 29 C 1.52998 * 113.61251 * 270.88705 * 28 8 5 30 30 C 1.52994 * 113.61529 * 139.98073 * 28 8 5 31 31 H 1.08998 * 109.47063 * 299.99761 * 1 2 3 32 32 H 1.08995 * 109.46915 * 60.00591 * 1 2 3 33 33 H 1.09003 * 109.46562 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47572 * 79.50517 * 7 5 3 35 35 H 1.09006 * 109.46986 * 199.50609 * 7 5 3 36 36 H 1.08999 * 109.47412 * 319.49739 * 7 5 3 37 37 H 0.96998 * 120.00189 * 284.49809 * 10 8 5 38 38 H 0.97001 * 120.00347 * 359.97438 * 13 11 10 39 39 H 0.96999 * 120.00185 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.47004 * 177.00548 * 29 28 8 41 41 H 1.09004 * 109.47300 * 296.99529 * 29 28 8 42 42 H 1.08995 * 109.47631 * 57.00095 * 29 28 8 43 43 H 1.08996 * 109.47441 * 303.00380 * 30 28 8 44 44 H 1.08999 * 109.47127 * 63.00189 * 30 28 8 45 45 H 1.08999 * 109.47590 * 182.99572 * 30 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3307 2.0724 0.3719 5 6 2.6906 1.6769 -1.3282 6 1 2.7663 2.7514 -1.4945 7 6 2.1262 0.9270 -2.5365 8 6 3.9723 1.0481 -0.7567 9 1 4.8771 1.6065 -0.9969 10 7 4.0975 -0.3848 -1.0347 11 6 4.9541 -0.8151 -1.9821 12 8 5.6227 -0.0142 -2.6063 13 7 5.0696 -2.1334 -2.2375 14 6 6.0002 -2.6012 -3.2676 15 1 6.8836 -1.9626 -3.2764 16 6 6.4095 -4.0203 -2.9680 17 1 6.0153 -4.5236 -2.0975 18 6 7.2870 -4.6761 -3.8052 19 7 7.7673 -4.0631 -4.8649 20 14 7.7937 -6.4354 -3.4340 21 1 6.8507 -7.3722 -4.0963 22 1 9.1678 -6.6730 -3.9446 23 1 7.7653 -6.6596 -1.9664 24 6 5.3170 -2.5454 -4.6355 25 9 4.9373 -1.2280 -4.9137 26 9 6.2056 -2.9927 -5.6192 27 9 4.1834 -3.3651 -4.6243 28 6 3.4076 1.3577 0.6398 29 6 3.7910 2.7436 1.1625 30 6 3.6558 0.2462 1.6614 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.1945 1.3961 -2.8526 35 1 2.8460 0.9616 -3.3543 36 1 1.9360 -0.1110 -2.2637 37 1 3.5639 -1.0239 -0.5369 38 1 4.5365 -2.7725 -1.7393 39 1 8.3844 -4.5246 -5.4541 40 1 3.3142 2.9124 2.1280 41 1 4.8734 2.8022 1.2768 42 1 3.4586 3.5034 0.4552 43 1 3.2319 -0.6877 1.2925 44 1 4.7284 0.1238 1.8119 45 1 3.1842 0.5106 2.6078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:11 Heat of formation + Delta-G solvation = -189.137632 kcal Electronic energy + Delta-G solvation = -32455.720974 eV Core-core repulsion = 27674.178736 eV Total energy + Delta-G solvation = -4781.542238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.24325 -45.89375 -45.51866 -40.98671 -38.70080 -36.48520 -34.52233 -33.02597 -32.39028 -31.81945 -28.24314 -27.67176 -27.46818 -26.21846 -24.55028 -24.23253 -21.64190 -20.68137 -19.98863 -18.79107 -18.23110 -16.85438 -16.74163 -16.51188 -16.38547 -15.88049 -15.69713 -15.48563 -15.04330 -14.75987 -14.50168 -14.09374 -13.82359 -13.48527 -13.18833 -13.08464 -12.80724 -12.74780 -12.53357 -12.41338 -12.29852 -12.28305 -12.19218 -12.14339 -11.88732 -11.74472 -11.72554 -11.38439 -11.19100 -11.11658 -10.89719 -10.83358 -10.72564 -10.38535 -10.33309 -10.04985 -9.58144 -9.41777 -9.40172 -8.67153 -8.53942 -8.03537 -6.17888 -4.41073 3.19270 3.22389 3.28722 3.31815 3.54999 3.88001 4.23428 4.36790 4.46425 4.65642 4.79788 4.85097 4.98038 5.00058 5.07483 5.09201 5.20801 5.27443 5.42473 5.49359 5.53728 5.55431 5.68148 5.75520 5.84219 5.87644 5.92594 5.97349 5.98925 6.06688 6.12925 6.30102 6.32878 6.37917 6.58012 6.95674 7.02547 7.13491 7.33421 7.48516 7.69271 7.84104 8.56494 8.81198 9.23143 9.38974 10.73794 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003636 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.914320 B = 7697.987601 C = 8025.285549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.070 0.930 5 C -0.148 4.148 6 H 0.098 0.902 7 C -0.131 4.131 8 C 0.166 3.834 9 H 0.098 0.902 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.587 6.587 13 N -0.727 5.727 14 C 0.264 3.736 15 H 0.084 0.916 16 C -0.550 4.550 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.914 3.086 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.416 3.584 25 F -0.216 7.216 26 F -0.139 7.139 27 F -0.211 7.211 28 C -0.095 4.095 29 C -0.124 4.124 30 C -0.129 4.129 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.393 0.607 39 H 0.267 0.733 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 9.545 11.673 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.169 4.169 6 H 0.116 0.884 7 C -0.188 4.188 8 C 0.058 3.942 9 H 0.116 0.884 10 N -0.380 5.380 11 C 0.401 3.599 12 O -0.464 6.464 13 N -0.380 5.380 14 C 0.157 3.843 15 H 0.102 0.898 16 C -0.587 4.587 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.741 3.259 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C 0.359 3.641 25 F -0.198 7.198 26 F -0.120 7.120 27 F -0.193 7.193 28 C -0.096 4.096 29 C -0.181 4.181 30 C -0.187 4.187 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.226 0.774 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.400 10.067 10.860 18.688 hybrid contribution -0.739 -1.235 0.186 1.451 sum -12.139 8.831 11.047 18.638 Atomic orbital electron populations 1.22774 0.81061 1.02709 0.99744 1.87787 1.19432 1.26327 1.94316 1.23276 0.93820 0.84988 0.96299 0.91223 1.23549 0.97697 1.00259 0.95348 0.88379 1.21415 0.99615 1.00804 0.96975 1.21550 0.97746 0.81967 0.92897 0.88355 1.44683 1.45165 1.06853 1.41300 1.16034 0.80345 0.83240 0.80234 1.90895 1.48838 1.53900 1.52810 1.45239 1.46267 1.04853 1.41618 1.19558 0.87563 0.98420 0.78723 0.89830 1.20887 1.29247 0.96024 1.12557 0.90560 1.25074 0.95617 0.99469 0.94239 1.70408 1.27781 1.37088 1.12069 0.86227 0.77937 0.82964 0.78765 1.20283 1.20853 1.19531 1.23184 0.76859 0.71353 0.92660 1.93069 1.92332 1.39078 1.95328 1.93395 1.65587 1.88068 1.64944 1.92980 1.54996 1.73989 1.97314 1.22470 0.94741 0.97041 0.95389 1.21527 1.02182 0.93689 1.00752 1.21499 1.01613 0.98182 0.97357 0.94308 0.94034 0.89622 0.93911 0.92153 0.91567 0.76649 0.77360 0.92205 0.92088 0.91438 0.92092 0.91461 0.92353 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.86 101.05 1.10 1.37 16 2 O -0.36 -3.84 6.62 -35.23 -0.23 -4.08 16 3 C 0.07 0.75 3.64 -25.91 -0.09 0.66 16 4 H 0.07 0.59 7.86 -51.93 -0.41 0.19 16 5 C -0.15 -1.78 3.96 -89.81 -0.36 -2.13 16 6 H 0.10 1.04 7.63 -51.93 -0.40 0.64 16 7 C -0.13 -1.83 8.97 37.16 0.33 -1.50 16 8 C 0.17 2.27 3.60 -67.12 -0.24 2.03 16 9 H 0.10 1.53 7.49 -51.93 -0.39 1.14 16 10 N -0.72 -11.33 3.51 -57.88 -0.20 -11.53 16 11 C 0.70 14.43 8.08 -86.92 -0.70 13.72 16 12 O -0.59 -14.36 14.55 5.30 0.08 -14.28 16 13 N -0.73 -15.42 4.99 -59.81 -0.30 -15.72 16 14 C 0.26 6.72 2.21 -69.08 -0.15 6.56 16 15 H 0.08 2.39 7.58 -51.93 -0.39 2.00 16 16 C -0.55 -14.25 8.46 -34.44 -0.29 -14.54 16 17 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 18 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 19 N -0.84 -23.37 9.51 55.43 0.53 -22.85 16 20 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.42 10.96 2.81 37.16 0.10 11.06 16 25 F -0.22 -5.68 15.68 2.25 0.04 -5.65 16 26 F -0.14 -3.93 12.91 2.25 0.03 -3.90 16 27 F -0.21 -5.35 16.94 2.25 0.04 -5.31 16 28 C -0.10 -0.97 1.34 -153.70 -0.21 -1.18 16 29 C -0.12 -1.01 9.07 37.16 0.34 -0.67 16 30 C -0.13 -1.31 8.45 37.15 0.31 -1.00 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.99 6.57 -51.93 -0.34 0.65 16 37 H 0.40 5.59 6.02 -40.82 -0.25 5.34 16 38 H 0.39 7.31 8.55 -40.82 -0.35 6.96 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.45 7.32 -51.93 -0.38 0.07 16 43 H 0.07 0.73 5.59 -51.93 -0.29 0.44 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -30.89 366.16 -6.02 -36.91 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.54 Total: 9.58 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 0.05 Total: 15.99 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.03 Total: -50.09 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.16 Total: -18.36 kcal Atomic # 9 Polarization: -14.97 SS G_CDS: 0.10 Total: -14.86 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.89 -6.02 -36.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.225 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds