Wall clock time and date at job start Tue Mar 31 2020 20:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00464 * 2 1 4 4 H 1.09004 * 112.84651 * 21.68515 * 3 2 1 5 5 C 1.53781 * 113.61097 * 250.49813 * 3 2 1 6 6 H 1.09002 * 113.61307 * 156.24913 * 5 3 2 7 7 C 1.52996 * 113.61782 * 25.42909 * 5 3 2 8 8 C 1.53783 * 87.08048 * 270.87754 * 5 3 2 9 9 H 1.08997 * 113.61108 * 89.11346 * 8 5 3 10 10 N 1.46499 * 113.61514 * 220.01967 * 8 5 3 11 11 C 1.34769 * 119.99973 * 255.49457 * 10 8 5 12 12 O 1.21584 * 120.00205 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99974 * 180.02562 * 11 10 8 14 14 C 1.46491 * 120.00062 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47435 * 325.00320 * 14 13 11 16 16 C 1.50697 * 109.47448 * 205.00237 * 14 13 11 17 17 H 1.08008 * 120.00166 * 274.94665 * 16 14 13 18 18 C 1.37877 * 120.00243 * 94.94095 * 16 14 13 19 19 N 1.31517 * 120.00503 * 184.87717 * 18 16 14 20 20 Si 1.86803 * 119.99712 * 4.88695 * 18 16 14 21 21 H 1.48495 * 109.47534 * 84.80346 * 20 18 16 22 22 H 1.48496 * 109.46837 * 204.80608 * 20 18 16 23 23 H 1.48499 * 109.47102 * 324.80383 * 20 18 16 24 24 C 1.53006 * 109.46954 * 85.00557 * 14 13 11 25 25 F 1.39893 * 109.47119 * 54.93782 * 24 14 13 26 26 F 1.39898 * 109.47256 * 174.93854 * 24 14 13 27 27 F 1.39903 * 109.46780 * 294.93597 * 24 14 13 28 28 C 1.53780 * 113.61817 * 152.99846 * 3 2 1 29 29 C 1.53002 * 113.61449 * 203.66630 * 28 3 2 30 30 C 1.52999 * 113.61011 * 334.56379 * 28 3 2 31 31 H 1.09002 * 109.46918 * 300.00125 * 1 2 3 32 32 H 1.08996 * 109.47139 * 60.00116 * 1 2 3 33 33 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47292 * 79.50532 * 7 5 3 35 35 H 1.09005 * 109.47040 * 199.50818 * 7 5 3 36 36 H 1.09004 * 109.47078 * 319.50487 * 7 5 3 37 37 H 0.97004 * 119.99294 * 75.50062 * 10 8 5 38 38 H 0.97003 * 120.00072 * 0.02562 * 13 11 10 39 39 H 0.96993 * 120.00499 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47229 * 79.49860 * 29 28 3 41 41 H 1.09000 * 109.46977 * 199.50406 * 29 28 3 42 42 H 1.09006 * 109.46777 * 319.50087 * 29 28 3 43 43 H 1.09000 * 109.47372 * 40.49934 * 30 28 3 44 44 H 1.09003 * 109.46914 * 160.49397 * 30 28 3 45 45 H 1.08990 * 109.47518 * 280.49444 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3298 2.0718 0.3712 5 6 2.6906 1.6767 -1.3282 6 1 2.7665 2.7513 -1.4945 7 6 2.1262 0.9270 -2.5366 8 6 3.9724 1.0479 -0.7568 9 1 4.0654 -0.0182 -0.9636 10 7 5.1883 1.7994 -1.0780 11 6 6.0319 1.3433 -2.0249 12 8 5.7837 0.3085 -2.6129 13 7 7.1508 2.0344 -2.3201 14 6 8.0681 1.5384 -3.3489 15 1 8.0885 0.4489 -3.3228 16 6 9.4525 2.0731 -3.0877 17 1 9.7330 3.0489 -3.4562 18 6 10.3613 1.3169 -2.3783 19 7 11.5357 1.8206 -2.0674 20 14 9.9244 -0.4235 -1.8588 21 1 10.2212 -1.3614 -2.9712 22 1 10.7256 -0.8001 -0.6667 23 1 8.4789 -0.4925 -1.5256 24 6 7.5918 2.0067 -4.7255 25 9 7.4551 3.3990 -4.7228 26 9 8.5279 1.6320 -5.6952 27 9 6.3569 1.4173 -5.0170 28 6 3.4078 1.3575 0.6397 29 6 3.7912 2.7434 1.1625 30 6 3.6559 0.2460 1.6614 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.1945 1.3962 -2.8526 35 1 2.8461 0.9615 -3.3543 36 1 1.9359 -0.1111 -2.2637 37 1 5.3861 2.6252 -0.6090 38 1 7.3491 2.8598 -1.8507 39 1 12.1751 1.2884 -1.5687 40 1 3.3143 2.9123 2.1280 41 1 4.8737 2.8019 1.2767 42 1 3.4589 3.5033 0.4552 43 1 3.2318 -0.6879 1.2925 44 1 4.7285 0.1235 1.8117 45 1 3.1842 0.5104 2.6077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:14 Heat of formation + Delta-G solvation = -217.327729 kcal Electronic energy + Delta-G solvation = -31983.995930 eV Core-core repulsion = 27201.231277 eV Total energy + Delta-G solvation = -4782.764652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.97961 -46.50080 -46.46353 -40.90036 -38.88286 -36.61511 -34.68432 -33.03653 -32.40699 -32.08489 -28.89709 -27.81380 -27.48262 -26.31218 -24.90300 -24.25612 -21.41851 -20.78316 -20.18489 -18.96244 -18.44260 -17.52431 -17.29909 -17.02582 -16.50992 -16.42052 -15.81939 -15.48571 -15.22691 -14.53411 -14.51880 -14.26837 -13.79157 -13.55712 -13.45138 -13.35912 -13.30299 -12.99403 -12.93200 -12.79855 -12.68014 -12.62692 -12.51500 -12.34637 -12.27101 -12.21267 -11.81087 -11.76688 -11.42899 -11.30223 -11.11461 -11.01505 -10.69496 -10.49525 -10.20484 -10.10150 -9.77013 -9.56855 -9.47823 -8.95524 -8.62912 -8.18926 -6.51445 -4.66305 3.10645 3.22911 3.27579 3.36007 3.43580 3.70565 4.05038 4.13925 4.30082 4.41165 4.60394 4.73749 4.85291 4.98316 5.02112 5.06342 5.15360 5.20651 5.26286 5.31489 5.35293 5.42923 5.48802 5.49899 5.55529 5.60997 5.73645 5.83176 5.86291 5.95709 6.04410 6.09415 6.29806 6.31889 6.37084 6.48238 6.89304 6.95493 7.06564 7.27718 7.54052 7.95493 8.54070 8.72490 9.05207 9.27175 10.56830 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003953 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.992039 B = 7082.128844 C = 7996.491699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.077 3.923 4 H 0.075 0.925 5 C -0.144 4.144 6 H 0.095 0.905 7 C -0.135 4.135 8 C 0.167 3.833 9 H 0.116 0.884 10 N -0.743 5.743 11 C 0.692 3.308 12 O -0.590 6.590 13 N -0.729 5.729 14 C 0.222 3.778 15 H 0.089 0.911 16 C -0.535 4.535 17 H 0.093 0.907 18 C 0.101 3.899 19 N -0.861 5.861 20 Si 0.868 3.132 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.252 1.252 24 C 0.436 3.564 25 F -0.194 7.194 26 F -0.183 7.183 27 F -0.194 7.194 28 C -0.094 4.094 29 C -0.133 4.133 30 C -0.131 4.131 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 1.204 7.320 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.018 3.982 4 H 0.093 0.907 5 C -0.165 4.165 6 H 0.113 0.887 7 C -0.192 4.192 8 C 0.060 3.940 9 H 0.134 0.866 10 N -0.398 5.398 11 C 0.392 3.608 12 O -0.468 6.468 13 N -0.384 5.384 14 C 0.118 3.882 15 H 0.106 0.894 16 C -0.573 4.573 17 H 0.111 0.889 18 C -0.109 4.109 19 N -0.493 5.493 20 Si 0.692 3.308 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.175 1.175 24 C 0.380 3.620 25 F -0.176 7.176 26 F -0.165 7.165 27 F -0.176 7.176 28 C -0.095 4.095 29 C -0.190 4.190 30 C -0.188 4.188 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.429 0.048 6.818 19.650 hybrid contribution -0.220 0.319 0.469 0.608 sum -18.649 0.367 7.287 20.026 Atomic orbital electron populations 1.22791 0.81206 1.02655 0.99848 1.87865 1.19324 1.26178 1.94316 1.23051 0.93696 0.85118 0.96382 0.90725 1.23598 0.97077 1.00596 0.95206 0.88696 1.21517 0.99864 1.00578 0.97269 1.22376 0.81699 0.97518 0.92384 0.86580 1.45260 1.24171 1.28192 1.42191 1.16468 0.80169 0.83971 0.80176 1.90874 1.76247 1.24712 1.55011 1.46701 1.21922 1.27975 1.41796 1.19843 0.89941 0.98423 0.80040 0.89377 1.20753 0.91921 1.06584 1.38049 0.88949 1.24991 0.94299 0.98402 0.93246 1.69859 1.06471 1.37495 1.35515 0.86932 0.80343 0.84243 0.79233 1.19073 1.20685 1.17530 1.21820 0.74274 0.74761 0.91191 1.93054 1.95774 1.31610 1.97143 1.93100 1.65890 1.91236 1.66268 1.93148 1.45537 1.83994 1.94916 1.22489 0.94472 0.96968 0.95545 1.21584 1.02216 0.94135 1.01079 1.21573 1.01554 0.98233 0.97448 0.94228 0.93978 0.89679 0.93665 0.91981 0.91690 0.77299 0.76987 0.91491 0.91880 0.91318 0.92005 0.91250 0.92510 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.86 101.05 1.10 1.34 16 2 O -0.36 -3.90 7.80 -35.23 -0.27 -4.18 16 3 C 0.08 0.78 3.64 -25.92 -0.09 0.69 16 4 H 0.07 0.63 7.85 -51.93 -0.41 0.23 16 5 C -0.14 -1.73 3.78 -89.81 -0.34 -2.07 16 6 H 0.09 1.07 7.63 -51.93 -0.40 0.67 16 7 C -0.13 -1.75 9.50 37.16 0.35 -1.39 16 8 C 0.17 2.33 3.14 -67.12 -0.21 2.12 16 9 H 0.12 1.98 7.45 -51.93 -0.39 1.59 16 10 N -0.74 -11.34 5.27 -57.88 -0.30 -11.64 16 11 C 0.69 13.92 8.22 -86.92 -0.71 13.21 16 12 O -0.59 -14.00 14.55 5.29 0.08 -13.93 16 13 N -0.73 -14.95 4.91 -59.82 -0.29 -15.25 16 14 C 0.22 5.22 1.71 -69.09 -0.12 5.11 16 15 H 0.09 2.23 4.73 -51.93 -0.25 1.98 16 16 C -0.54 -13.80 8.52 -34.44 -0.29 -14.09 16 17 H 0.09 2.56 8.00 -52.48 -0.42 2.14 16 18 C 0.10 2.65 5.47 -17.82 -0.10 2.55 16 19 N -0.86 -23.74 13.96 55.43 0.77 -22.96 16 20 Si 0.87 20.52 26.99 -169.99 -4.59 15.93 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.25 -6.11 6.82 56.52 0.39 -5.72 16 24 C 0.44 9.99 2.83 37.16 0.11 10.09 16 25 F -0.19 -4.26 16.93 2.25 0.04 -4.22 16 26 F -0.18 -4.28 16.89 2.25 0.04 -4.24 16 27 F -0.19 -4.46 15.83 2.25 0.04 -4.43 16 28 C -0.09 -1.00 1.35 -153.70 -0.21 -1.21 16 29 C -0.13 -1.14 7.97 37.16 0.30 -0.85 16 30 C -0.13 -1.42 8.99 37.16 0.33 -1.09 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.87 7.07 -51.93 -0.37 0.50 16 37 H 0.39 4.90 6.67 -40.82 -0.27 4.63 16 38 H 0.40 7.21 8.61 -40.82 -0.35 6.86 16 39 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.61 7.23 -51.93 -0.38 0.23 16 42 H 0.06 0.49 7.32 -51.93 -0.38 0.11 16 43 H 0.07 0.82 7.07 -51.93 -0.37 0.45 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -30.34 373.23 -5.27 -35.61 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.50 Total: 9.26 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 0.11 Total: 14.42 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.17 Total: -49.85 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.20 Total: -18.10 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 0.11 Total: -12.89 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.59 Total: 15.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.34 -5.27 -35.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.716 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds