Wall clock time and date at job start Tue Mar 31 2020 20:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00464 * 2 1 4 4 H 1.09004 * 112.84651 * 21.68515 * 3 2 1 5 5 C 1.53781 * 113.61097 * 250.49813 * 3 2 1 6 6 H 1.09002 * 113.61307 * 156.24913 * 5 3 2 7 7 C 1.52996 * 113.61782 * 25.42909 * 5 3 2 8 8 C 1.53783 * 87.08048 * 270.87754 * 5 3 2 9 9 H 1.08997 * 113.61108 * 89.11346 * 8 5 3 10 10 N 1.46499 * 113.61514 * 220.01967 * 8 5 3 11 11 C 1.34769 * 119.99973 * 255.49457 * 10 8 5 12 12 O 1.21584 * 120.00205 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99974 * 180.02562 * 11 10 8 14 14 C 1.46491 * 120.00062 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47435 * 325.00320 * 14 13 11 16 16 C 1.50697 * 109.47448 * 205.00237 * 14 13 11 17 17 H 1.08008 * 120.00166 * 274.94665 * 16 14 13 18 18 C 1.37877 * 120.00243 * 94.94095 * 16 14 13 19 19 N 1.31517 * 120.00503 * 184.87717 * 18 16 14 20 20 Si 1.86803 * 119.99712 * 4.88695 * 18 16 14 21 21 H 1.48495 * 109.47534 * 84.80346 * 20 18 16 22 22 H 1.48496 * 109.46837 * 204.80608 * 20 18 16 23 23 H 1.48499 * 109.47102 * 324.80383 * 20 18 16 24 24 C 1.53006 * 109.46954 * 85.00557 * 14 13 11 25 25 F 1.39893 * 109.47119 * 54.93782 * 24 14 13 26 26 F 1.39898 * 109.47256 * 174.93854 * 24 14 13 27 27 F 1.39903 * 109.46780 * 294.93597 * 24 14 13 28 28 C 1.53780 * 113.61817 * 152.99846 * 3 2 1 29 29 C 1.53002 * 113.61449 * 203.66630 * 28 3 2 30 30 C 1.52999 * 113.61011 * 334.56379 * 28 3 2 31 31 H 1.09002 * 109.46918 * 300.00125 * 1 2 3 32 32 H 1.08996 * 109.47139 * 60.00116 * 1 2 3 33 33 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47292 * 79.50532 * 7 5 3 35 35 H 1.09005 * 109.47040 * 199.50818 * 7 5 3 36 36 H 1.09004 * 109.47078 * 319.50487 * 7 5 3 37 37 H 0.97004 * 119.99294 * 75.50062 * 10 8 5 38 38 H 0.97003 * 120.00072 * 0.02562 * 13 11 10 39 39 H 0.96993 * 120.00499 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47229 * 79.49860 * 29 28 3 41 41 H 1.09000 * 109.46977 * 199.50406 * 29 28 3 42 42 H 1.09006 * 109.46777 * 319.50087 * 29 28 3 43 43 H 1.09000 * 109.47372 * 40.49934 * 30 28 3 44 44 H 1.09003 * 109.46914 * 160.49397 * 30 28 3 45 45 H 1.08990 * 109.47518 * 280.49444 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3298 2.0718 0.3712 5 6 2.6906 1.6767 -1.3282 6 1 2.7665 2.7513 -1.4945 7 6 2.1262 0.9270 -2.5366 8 6 3.9724 1.0479 -0.7568 9 1 4.0654 -0.0182 -0.9636 10 7 5.1883 1.7994 -1.0780 11 6 6.0319 1.3433 -2.0249 12 8 5.7837 0.3085 -2.6129 13 7 7.1508 2.0344 -2.3201 14 6 8.0681 1.5384 -3.3489 15 1 8.0885 0.4489 -3.3228 16 6 9.4525 2.0731 -3.0877 17 1 9.7330 3.0489 -3.4562 18 6 10.3613 1.3169 -2.3783 19 7 11.5357 1.8206 -2.0674 20 14 9.9244 -0.4235 -1.8588 21 1 10.2212 -1.3614 -2.9712 22 1 10.7256 -0.8001 -0.6667 23 1 8.4789 -0.4925 -1.5256 24 6 7.5918 2.0067 -4.7255 25 9 7.4551 3.3990 -4.7228 26 9 8.5279 1.6320 -5.6952 27 9 6.3569 1.4173 -5.0170 28 6 3.4078 1.3575 0.6397 29 6 3.7912 2.7434 1.1625 30 6 3.6559 0.2460 1.6614 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.1945 1.3962 -2.8526 35 1 2.8461 0.9615 -3.3543 36 1 1.9359 -0.1111 -2.2637 37 1 5.3861 2.6252 -0.6090 38 1 7.3491 2.8598 -1.8507 39 1 12.1751 1.2884 -1.5687 40 1 3.3143 2.9123 2.1280 41 1 4.8737 2.8019 1.2767 42 1 3.4589 3.5033 0.4552 43 1 3.2318 -0.6879 1.2925 44 1 4.7285 0.1235 1.8117 45 1 3.1842 0.5104 2.6077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:13 Heat of formation + Delta-G solvation = -237.855453 kcal Electronic energy + Delta-G solvation = -31984.886079 eV Core-core repulsion = 27201.231277 eV Total energy + Delta-G solvation = -4783.654801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.85070 -48.35383 -48.34628 -41.92991 -40.38346 -37.51057 -36.49632 -34.64279 -34.12618 -33.04032 -30.68668 -28.52122 -28.36717 -27.11544 -26.86883 -25.33599 -23.18338 -21.82869 -21.71184 -20.39686 -19.87731 -19.30529 -18.92069 -18.53147 -18.36355 -17.90584 -16.83521 -16.61407 -16.31794 -16.08684 -15.83136 -15.45824 -15.31041 -15.23333 -14.99020 -14.83367 -14.79709 -14.61485 -14.54656 -14.49002 -14.28975 -14.14161 -13.73824 -13.69050 -13.19276 -13.17359 -13.05364 -12.98450 -12.58344 -12.56683 -12.29814 -12.23882 -11.99858 -11.87356 -11.81361 -11.49431 -11.30088 -11.08381 -10.96948 -10.30120 -10.21021 -9.64491 -8.56219 -6.73919 1.24096 1.31245 1.43317 1.71313 1.97084 2.16488 2.31667 2.70701 2.84945 3.18555 3.37385 3.38737 3.41912 3.55926 3.76303 3.78907 3.98432 4.24170 4.31945 4.40024 4.41882 4.50701 4.58824 4.66911 4.69627 4.79545 4.87595 4.91462 4.92045 4.95876 5.00211 5.04858 5.11031 5.17622 5.37594 5.43036 5.47620 5.54047 5.69512 5.84479 6.18564 6.35748 6.43359 6.99724 7.22014 7.68654 8.56059 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003953 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.992039 B = 7082.128844 C = 7996.491699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.382 6.382 3 C 0.089 3.911 4 H 0.105 0.895 5 C -0.143 4.143 6 H 0.110 0.890 7 C -0.130 4.130 8 C 0.148 3.852 9 H 0.079 0.921 10 N -0.722 5.722 11 C 0.689 3.311 12 O -0.628 6.628 13 N -0.726 5.726 14 C 0.230 3.770 15 H 0.073 0.927 16 C -0.535 4.535 17 H 0.068 0.932 18 C 0.068 3.932 19 N -0.895 5.895 20 Si 0.918 3.082 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.264 1.264 24 C 0.437 3.563 25 F -0.187 7.187 26 F -0.186 7.186 27 F -0.193 7.193 28 C -0.083 4.083 29 C -0.132 4.132 30 C -0.129 4.129 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.054 0.946 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.280 0.720 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.655 2.088 9.001 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.301 6.301 3 C 0.030 3.970 4 H 0.123 0.877 5 C -0.163 4.163 6 H 0.128 0.872 7 C -0.187 4.187 8 C 0.042 3.958 9 H 0.097 0.903 10 N -0.378 5.378 11 C 0.389 3.611 12 O -0.509 6.509 13 N -0.381 5.381 14 C 0.124 3.876 15 H 0.091 0.909 16 C -0.573 4.573 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.742 3.258 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.188 1.188 24 C 0.381 3.619 25 F -0.168 7.168 26 F -0.168 7.168 27 F -0.175 7.175 28 C -0.084 4.084 29 C -0.189 4.189 30 C -0.186 4.186 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.579 0.968 8.540 22.302 hybrid contribution 0.341 0.047 -0.084 0.354 sum -20.238 1.015 8.456 21.957 Atomic orbital electron populations 1.22972 0.79581 1.03561 1.00918 1.87859 1.21191 1.26721 1.94292 1.22997 0.93865 0.85699 0.94479 0.87708 1.23640 0.95905 1.00965 0.95779 0.87238 1.21442 0.99989 1.00577 0.96691 1.22560 0.81676 0.95665 0.95855 0.90333 1.45096 1.23636 1.28579 1.40535 1.16550 0.80343 0.83395 0.80778 1.90852 1.77056 1.26409 1.56620 1.46194 1.21923 1.28521 1.41508 1.19534 0.89622 0.97501 0.80940 0.90919 1.20675 0.93104 1.05590 1.37908 0.91340 1.25475 0.94174 1.00868 0.93392 1.69913 1.07385 1.38816 1.36875 0.86154 0.79285 0.81066 0.79259 1.18991 1.19419 1.18827 1.21701 0.74242 0.75080 0.90846 1.93064 1.95730 1.30958 1.97097 1.93092 1.66031 1.91307 1.66363 1.93152 1.45428 1.84050 1.94870 1.22506 0.94299 0.98215 0.93388 1.21628 1.02254 0.92642 1.02422 1.21546 1.00799 0.97805 0.98460 0.92457 0.93482 0.89059 0.91421 0.95348 0.92695 0.75372 0.75546 0.90965 0.89783 0.91679 0.90768 0.92778 0.93746 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.86 113.37 1.23 1.56 16 2 O -0.38 -7.60 7.80 -148.98 -1.16 -8.77 16 3 C 0.09 1.55 3.64 31.12 0.11 1.67 16 4 H 0.11 1.27 7.85 -2.38 -0.02 1.26 16 5 C -0.14 -3.16 3.78 -10.27 -0.04 -3.20 16 6 H 0.11 2.13 7.63 -2.39 -0.02 2.11 16 7 C -0.13 -3.28 9.50 71.98 0.68 -2.60 16 8 C 0.15 4.03 3.14 45.52 0.14 4.17 16 9 H 0.08 2.78 7.45 -2.39 -0.02 2.76 16 10 N -0.72 -21.39 5.27 -455.30 -2.40 -23.79 16 11 C 0.69 27.66 8.22 179.06 1.47 29.14 16 12 O -0.63 -30.35 14.55 -3.98 -0.06 -30.40 16 13 N -0.73 -29.54 4.91 -461.43 -2.27 -31.81 16 14 C 0.23 10.87 1.71 44.25 0.08 10.95 16 15 H 0.07 3.71 4.73 -2.39 -0.01 3.69 16 16 C -0.53 -27.78 8.52 25.60 0.22 -27.56 16 17 H 0.07 3.86 8.00 -2.91 -0.02 3.83 16 18 C 0.07 3.58 5.47 84.65 0.46 4.04 16 19 N -0.90 -49.58 13.96 21.45 0.30 -49.28 16 20 Si 0.92 42.59 26.99 68.60 1.85 44.44 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.26 -12.70 6.82 99.48 0.68 -12.02 16 24 C 0.44 20.04 2.83 71.98 0.20 20.24 16 25 F -0.19 -8.11 16.93 44.97 0.76 -7.34 16 26 F -0.19 -8.70 16.89 44.97 0.76 -7.94 16 27 F -0.19 -8.89 15.83 44.97 0.71 -8.17 16 28 C -0.08 -1.58 1.35 -51.66 -0.07 -1.65 16 29 C -0.13 -1.79 7.97 71.98 0.57 -1.22 16 30 C -0.13 -2.59 8.99 71.98 0.65 -1.94 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 1.48 7.07 -2.38 -0.02 1.46 16 37 H 0.41 9.41 6.67 -92.71 -0.62 8.79 16 38 H 0.41 14.54 8.61 -92.71 -0.80 13.74 16 39 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.95 7.23 -2.39 -0.02 0.93 16 42 H 0.07 0.84 7.32 -2.38 -0.02 0.83 16 43 H 0.05 1.25 7.07 -2.39 -0.02 1.23 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.38 373.23 3.81 -62.57 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.41 Total: 26.89 kcal Atomic # 6 Polarization: 27.89 SS G_CDS: 5.72 Total: 33.60 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.37 Total: -104.87 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.22 Total: -39.17 kcal Atomic # 9 Polarization: -25.69 SS G_CDS: 2.23 Total: -23.46 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.85 Total: 44.44 kcal Total: -66.38 3.81 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.283 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds