Wall clock time and date at job start Tue Mar 31 2020 21:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34777 * 125.64359 * 204.16353 * 5 4 2 7 7 O 1.21279 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99791 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47308 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47308 * 180.02562 * 9 8 6 11 11 C 1.38224 * 119.98625 * 99.99392 * 10 9 8 12 12 C 1.38187 * 120.04940 * 179.97438 * 11 10 9 13 13 C 1.38490 * 120.02659 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.01747 * 179.97438 * 13 12 11 15 15 C 1.38401 * 119.97547 * 359.97438 * 13 12 11 16 16 C 1.38448 * 119.94630 * 359.72688 * 15 13 12 17 17 F 1.35101 * 120.01294 * 180.27200 * 16 15 13 18 18 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 19 19 C 1.54324 * 107.27321 * 358.94388 * 18 5 4 20 20 H 1.08995 * 110.72617 * 96.34448 * 19 18 5 21 21 N 1.46499 * 110.72129 * 219.44397 * 19 18 5 22 22 C 1.36931 * 120.00122 * 273.54344 * 21 19 18 23 23 H 1.08002 * 120.00098 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00429 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99535 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 180.27849 * 24 22 21 27 27 H 1.48497 * 109.47173 * 179.72427 * 26 24 22 28 28 H 1.48506 * 109.46866 * 299.71963 * 26 24 22 29 29 H 1.48501 * 109.47438 * 59.72083 * 26 24 22 30 30 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 31 31 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 32 32 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 33 33 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 34 34 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 35 35 H 1.09000 * 109.47418 * 299.99912 * 8 6 5 36 36 H 1.08997 * 109.47056 * 59.99867 * 8 6 5 37 37 H 1.09007 * 109.46691 * 299.99860 * 9 8 6 38 38 H 1.08997 * 109.47217 * 59.99909 * 9 8 6 39 39 H 1.08005 * 119.97680 * 359.97438 * 11 10 9 40 40 H 1.08006 * 119.99049 * 180.02562 * 12 11 10 41 41 H 1.07993 * 120.02789 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.88283 * 239.52716 * 18 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 18 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 21 19 18 45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4981 -2.7961 8 6 5.7719 -1.9921 -1.0174 9 6 6.7504 -2.2910 -2.1550 10 6 8.0740 -2.7234 -1.5787 11 6 8.3969 -4.0662 -1.5213 12 6 9.6104 -4.4642 -0.9935 13 6 10.5043 -3.5179 -0.5210 14 9 11.6905 -3.9072 -0.0045 15 6 10.1821 -2.1731 -0.5779 16 6 8.9686 -1.7752 -1.1125 17 9 8.6551 -0.4625 -1.1738 18 6 3.4675 -1.2739 0.6962 19 6 2.0862 -0.8078 1.2024 20 1 1.4479 -1.6630 1.4241 21 7 2.2286 0.0498 2.3816 22 6 2.3033 -0.5088 3.6295 23 1 2.2576 -1.5817 3.7445 24 6 2.4377 0.3038 4.7469 25 7 2.4938 1.6113 4.6067 26 14 2.5474 -0.4588 6.4485 27 1 2.6922 0.6151 7.4638 28 1 1.3122 -1.2362 6.7231 29 1 3.7248 -1.3616 6.5115 30 1 -0.3634 0.4521 0.9228 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3632 -1.0253 -0.0699 33 1 2.1560 -0.1721 -2.0837 34 1 1.4526 -1.6705 -1.4041 35 1 6.1741 -1.1942 -0.3931 36 1 5.6304 -2.8889 -0.4143 37 1 6.3485 -3.0888 -2.7797 38 1 6.8919 -1.3939 -2.7577 39 1 7.7002 -4.8050 -1.8892 40 1 9.8619 -5.5136 -0.9496 41 1 10.8784 -1.4345 -0.2092 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939447861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:44 Heat of formation + Delta-G solvation = -98.745808 kcal Electronic energy + Delta-G solvation = -28687.388831 eV Core-core repulsion = 24340.535501 eV Total energy + Delta-G solvation = -4346.853330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.29927 -49.21277 -39.98932 -39.23089 -37.64928 -34.16196 -34.06231 -32.52424 -31.19014 -30.76674 -29.69002 -27.54074 -26.54727 -24.48104 -23.87687 -23.52580 -21.83390 -21.29875 -19.98618 -18.91382 -18.48886 -17.55327 -17.17219 -17.05934 -16.26002 -16.13290 -16.08944 -15.64289 -15.47012 -15.29104 -14.90215 -14.67232 -14.22443 -14.19257 -13.63806 -13.55761 -13.21717 -13.16504 -12.89174 -12.79460 -12.54645 -12.34273 -12.15936 -11.96801 -11.85474 -11.63180 -11.54411 -11.17373 -11.14211 -11.01473 -10.76593 -10.64147 -10.31504 -10.00812 -9.82967 -9.69056 -9.40337 -9.03650 -8.89182 -8.35730 -7.13502 -5.88532 -3.19701 0.60037 0.66913 2.79849 2.97011 3.24425 3.37074 3.42266 3.43104 3.55792 4.09381 4.22935 4.29230 4.48123 4.50491 4.74693 4.75880 4.92425 5.02368 5.10600 5.14300 5.19796 5.43465 5.44647 5.49609 5.52995 5.60616 5.60688 5.63373 5.71502 5.74982 5.80234 5.88259 5.96595 5.97492 6.02253 6.16662 6.23004 6.34290 6.43523 6.45401 6.52921 6.58928 6.83906 7.58715 7.77739 8.28344 8.33478 9.40780 9.94453 10.29329 11.33229 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.002957 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.117525 B = 9467.961552 C =11655.964738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.612 5.612 6 C 0.528 3.472 7 O -0.557 6.557 8 C -0.133 4.133 9 C -0.062 4.062 10 C -0.123 4.123 11 C -0.058 4.058 12 C -0.162 4.162 13 C 0.123 3.877 14 F -0.133 7.133 15 C -0.190 4.190 16 C 0.135 3.865 17 F -0.125 7.125 18 C 0.071 3.929 19 C 0.177 3.823 20 H 0.066 0.934 21 N -0.711 5.711 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 -10.316 -13.396 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.345 5.345 6 C 0.317 3.683 7 O -0.436 6.436 8 C -0.172 4.172 9 C -0.100 4.100 10 C -0.125 4.125 11 C -0.076 4.076 12 C -0.181 4.181 13 C 0.104 3.896 14 F -0.112 7.112 15 C -0.210 4.210 16 C 0.115 3.885 17 F -0.103 7.103 18 C -0.055 4.055 19 C 0.065 3.935 20 H 0.084 0.916 21 N -0.351 5.351 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.211 1.211 29 H -0.212 1.212 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.315 -10.338 -13.852 20.128 hybrid contribution 0.476 0.145 1.298 1.390 sum 10.791 -10.193 -12.553 19.440 Atomic orbital electron populations 1.21609 0.93853 1.01538 1.02113 1.22622 0.96336 0.99809 0.94588 0.89821 1.22255 0.82861 0.98064 0.97754 1.48561 1.12045 1.65756 1.08182 1.20202 0.84907 0.77110 0.86108 1.90664 1.83452 1.54806 1.14689 1.21607 0.92618 1.03775 0.99240 1.20278 0.89230 1.03610 0.96868 1.20089 0.97185 0.93136 1.02042 1.20847 0.95671 0.94626 0.96445 1.21213 0.94498 1.00133 1.02225 1.17306 0.82426 0.92150 0.97728 1.91534 1.43782 1.91503 1.84346 1.21056 0.98232 0.95967 1.05698 1.17193 0.93499 0.78339 0.99441 1.91560 1.92863 1.32036 1.93872 1.23362 1.03476 1.01258 0.77395 1.21241 0.91528 0.93832 0.86910 0.91609 1.42352 1.86963 1.05302 1.00531 1.19186 1.43465 0.91879 0.83601 0.91038 1.24761 1.02252 0.95341 0.97988 1.69652 1.56262 1.02304 1.29371 0.86277 0.77944 0.77891 0.84094 1.21632 1.21135 1.21157 0.91319 0.93160 0.92849 0.90999 0.91689 0.88624 0.88644 0.89396 0.89576 0.83716 0.83961 0.83380 0.90772 0.92248 0.77849 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.31 37.16 0.35 -1.48 16 2 C -0.11 -1.75 3.25 -88.47 -0.29 -2.03 16 3 H 0.08 1.38 8.00 -51.93 -0.42 0.96 16 4 C 0.11 1.65 6.37 -2.53 -0.02 1.64 16 5 N -0.61 -9.46 3.33 -170.52 -0.57 -10.03 16 6 C 0.53 8.07 7.85 -10.98 -0.09 7.99 16 7 O -0.56 -9.90 16.24 5.56 0.09 -9.81 16 8 C -0.13 -1.61 4.87 -27.88 -0.14 -1.74 16 9 C -0.06 -0.67 4.36 -27.88 -0.12 -0.79 16 10 C -0.12 -1.20 5.14 -104.55 -0.54 -1.74 16 11 C -0.06 -0.45 9.66 -39.61 -0.38 -0.83 16 12 C -0.16 -1.25 10.02 -39.51 -0.40 -1.65 16 13 C 0.12 1.14 7.30 -39.43 -0.29 0.86 16 14 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 15 C -0.19 -1.84 10.01 -39.44 -0.39 -2.23 16 16 C 0.13 1.44 7.24 -39.43 -0.29 1.16 16 17 F -0.13 -1.53 16.66 2.25 0.04 -1.49 16 18 C 0.07 1.17 6.24 -3.07 -0.02 1.15 16 19 C 0.18 3.18 3.06 -66.09 -0.20 2.98 16 20 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 21 N -0.71 -16.30 5.18 -51.65 -0.27 -16.57 16 22 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -26.71 13.06 55.49 0.72 -25.98 16 26 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.06 0.88 7.99 -51.93 -0.41 0.46 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.88 7.96 -51.93 -0.41 0.46 16 38 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 39 H 0.15 0.79 8.04 -52.48 -0.42 0.37 16 40 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.39 9.58 7.71 -40.82 -0.31 9.27 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -29.94 385.48 -8.78 -38.72 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.57 Total: 7.92 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.05 Total: -3.59 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.11 Total: -52.58 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.94 -8.78 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939447861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.027 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds