Wall clock time and date at job start Tue Mar 31 2020 21:04:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 110.91134 * 2 1
4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3
5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1
6 6 C 1.34777 * 125.64359 * 204.16353 * 5 4 2
7 7 O 1.21279 * 120.00291 * 359.97438 * 6 5 4
8 8 C 1.50701 * 119.99791 * 179.97438 * 6 5 4
9 9 C 1.53003 * 109.47308 * 180.02562 * 8 6 5
10 10 C 1.50701 * 109.47308 * 180.02562 * 9 8 6
11 11 C 1.38224 * 119.98625 * 99.99392 * 10 9 8
12 12 C 1.38187 * 120.04940 * 179.97438 * 11 10 9
13 13 C 1.38490 * 120.02659 * 0.02562 * 12 11 10
14 14 F 1.35104 * 120.01747 * 179.97438 * 13 12 11
15 15 C 1.38401 * 119.97547 * 359.97438 * 13 12 11
16 16 C 1.38448 * 119.94630 * 359.72688 * 15 13 12
17 17 F 1.35101 * 120.01294 * 180.27200 * 16 15 13
18 18 C 1.47017 * 108.70563 * 24.12485 * 5 4 2
19 19 C 1.54324 * 107.27321 * 358.94388 * 18 5 4
20 20 H 1.08995 * 110.72617 * 96.34448 * 19 18 5
21 21 N 1.46499 * 110.72129 * 219.44397 * 19 18 5
22 22 C 1.36931 * 120.00122 * 273.54344 * 21 19 18
23 23 H 1.08002 * 120.00098 * 0.02562 * 22 21 19
24 24 C 1.38812 * 120.00429 * 180.02562 * 22 21 19
25 25 N 1.31624 * 119.99535 * 359.97438 * 24 22 21
26 26 Si 1.86796 * 120.00187 * 180.27849 * 24 22 21
27 27 H 1.48497 * 109.47173 * 179.72427 * 26 24 22
28 28 H 1.48506 * 109.46866 * 299.71963 * 26 24 22
29 29 H 1.48501 * 109.47438 * 59.72083 * 26 24 22
30 30 H 1.09000 * 109.47369 * 296.10135 * 1 2 3
31 31 H 1.08999 * 109.47009 * 56.10715 * 1 2 3
32 32 H 1.09002 * 109.46507 * 176.10181 * 1 2 3
33 33 H 1.09001 * 110.36963 * 86.07513 * 4 2 1
34 34 H 1.09000 * 110.45879 * 323.79471 * 4 2 1
35 35 H 1.09000 * 109.47418 * 299.99912 * 8 6 5
36 36 H 1.08997 * 109.47056 * 59.99867 * 8 6 5
37 37 H 1.09007 * 109.46691 * 299.99860 * 9 8 6
38 38 H 1.08997 * 109.47217 * 59.99909 * 9 8 6
39 39 H 1.08005 * 119.97680 * 359.97438 * 11 10 9
40 40 H 1.08006 * 119.99049 * 180.02562 * 12 11 10
41 41 H 1.07993 * 120.02789 * 179.97438 * 15 13 12
42 42 H 1.09000 * 109.88283 * 239.52716 * 18 5 4
43 43 H 1.09004 * 110.01221 * 118.43143 * 18 5 4
44 44 H 0.97001 * 119.99790 * 93.53861 * 21 19 18
45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9190 1.0182 0.0000
4 6 2.0853 -0.8067 -1.2002
5 7 3.4272 -1.2430 -0.7731
6 6 4.4482 -1.5602 -1.5938
7 8 4.3016 -1.4981 -2.7961
8 6 5.7719 -1.9921 -1.0174
9 6 6.7504 -2.2910 -2.1550
10 6 8.0740 -2.7234 -1.5787
11 6 8.3969 -4.0662 -1.5213
12 6 9.6104 -4.4642 -0.9935
13 6 10.5043 -3.5179 -0.5210
14 9 11.6905 -3.9072 -0.0045
15 6 10.1821 -2.1731 -0.5779
16 6 8.9686 -1.7752 -1.1125
17 9 8.6551 -0.4625 -1.1738
18 6 3.4675 -1.2739 0.6962
19 6 2.0862 -0.8078 1.2024
20 1 1.4479 -1.6630 1.4241
21 7 2.2286 0.0498 2.3816
22 6 2.3033 -0.5088 3.6295
23 1 2.2576 -1.5817 3.7445
24 6 2.4377 0.3038 4.7469
25 7 2.4938 1.6113 4.6067
26 14 2.5474 -0.4588 6.4485
27 1 2.6922 0.6151 7.4638
28 1 1.3122 -1.2362 6.7231
29 1 3.7248 -1.3616 6.5115
30 1 -0.3634 0.4521 0.9228
31 1 -0.3633 0.5731 -0.8530
32 1 -0.3632 -1.0253 -0.0699
33 1 2.1560 -0.1721 -2.0837
34 1 1.4526 -1.6705 -1.4041
35 1 6.1741 -1.1942 -0.3931
36 1 5.6304 -2.8889 -0.4143
37 1 6.3485 -3.0888 -2.7797
38 1 6.8919 -1.3939 -2.7577
39 1 7.7002 -4.8050 -1.8892
40 1 9.8619 -5.5136 -0.9496
41 1 10.8784 -1.4345 -0.2092
42 1 4.2426 -0.5994 1.0601
43 1 3.6663 -2.2881 1.0427
44 1 2.2700 1.0134 2.2783
45 1 2.5881 2.1792 5.3875
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000939447861.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:04:44
Heat of formation + Delta-G solvation = -98.745808 kcal
Electronic energy + Delta-G solvation = -28687.388831 eV
Core-core repulsion = 24340.535501 eV
Total energy + Delta-G solvation = -4346.853330 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-49.29927 -49.21277 -39.98932 -39.23089 -37.64928 -34.16196 -34.06231 -32.52424
-31.19014 -30.76674 -29.69002 -27.54074 -26.54727 -24.48104 -23.87687 -23.52580
-21.83390 -21.29875 -19.98618 -18.91382 -18.48886 -17.55327 -17.17219 -17.05934
-16.26002 -16.13290 -16.08944 -15.64289 -15.47012 -15.29104 -14.90215 -14.67232
-14.22443 -14.19257 -13.63806 -13.55761 -13.21717 -13.16504 -12.89174 -12.79460
-12.54645 -12.34273 -12.15936 -11.96801 -11.85474 -11.63180 -11.54411 -11.17373
-11.14211 -11.01473 -10.76593 -10.64147 -10.31504 -10.00812 -9.82967 -9.69056
-9.40337 -9.03650 -8.89182 -8.35730 -7.13502 -5.88532 -3.19701 0.60037
0.66913 2.79849 2.97011 3.24425 3.37074 3.42266 3.43104 3.55792
4.09381 4.22935 4.29230 4.48123 4.50491 4.74693 4.75880 4.92425
5.02368 5.10600 5.14300 5.19796 5.43465 5.44647 5.49609 5.52995
5.60616 5.60688 5.63373 5.71502 5.74982 5.80234 5.88259 5.96595
5.97492 6.02253 6.16662 6.23004 6.34290 6.43523 6.45401 6.52921
6.58928 6.83906 7.58715 7.77739 8.28344 8.33478 9.40780 9.94453
10.29329 11.33229
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.009287 B = 0.002957 C = 0.002402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3014.117525 B = 9467.961552 C =11655.964738
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.114 4.114
3 H 0.083 0.917
4 C 0.114 3.886
5 N -0.612 5.612
6 C 0.528 3.472
7 O -0.557 6.557
8 C -0.133 4.133
9 C -0.062 4.062
10 C -0.123 4.123
11 C -0.058 4.058
12 C -0.162 4.162
13 C 0.123 3.877
14 F -0.133 7.133
15 C -0.190 4.190
16 C 0.135 3.865
17 F -0.125 7.125
18 C 0.071 3.929
19 C 0.177 3.823
20 H 0.066 0.934
21 N -0.711 5.711
22 C -0.250 4.250
23 H 0.072 0.928
24 C -0.007 4.007
25 N -0.929 5.929
26 Si 0.907 3.093
27 H -0.290 1.290
28 H -0.285 1.285
29 H -0.285 1.285
30 H 0.068 0.932
31 H 0.049 0.951
32 H 0.052 0.948
33 H 0.072 0.928
34 H 0.065 0.935
35 H 0.095 0.905
36 H 0.095 0.905
37 H 0.087 0.913
38 H 0.086 0.914
39 H 0.145 0.855
40 H 0.143 0.857
41 H 0.148 0.852
42 H 0.074 0.926
43 H 0.059 0.941
44 H 0.387 0.613
45 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.300 -10.316 -13.396 19.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.134 4.134
3 H 0.102 0.898
4 C -0.009 4.009
5 N -0.345 5.345
6 C 0.317 3.683
7 O -0.436 6.436
8 C -0.172 4.172
9 C -0.100 4.100
10 C -0.125 4.125
11 C -0.076 4.076
12 C -0.181 4.181
13 C 0.104 3.896
14 F -0.112 7.112
15 C -0.210 4.210
16 C 0.115 3.885
17 F -0.103 7.103
18 C -0.055 4.055
19 C 0.065 3.935
20 H 0.084 0.916
21 N -0.351 5.351
22 C -0.381 4.381
23 H 0.090 0.910
24 C -0.203 4.203
25 N -0.576 5.576
26 Si 0.738 3.262
27 H -0.216 1.216
28 H -0.211 1.211
29 H -0.212 1.212
30 H 0.087 0.913
31 H 0.068 0.932
32 H 0.072 0.928
33 H 0.090 0.910
34 H 0.083 0.917
35 H 0.114 0.886
36 H 0.114 0.886
37 H 0.106 0.894
38 H 0.104 0.896
39 H 0.163 0.837
40 H 0.160 0.840
41 H 0.166 0.834
42 H 0.092 0.908
43 H 0.078 0.922
44 H 0.222 0.778
45 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 10.315 -10.338 -13.852 20.128
hybrid contribution 0.476 0.145 1.298 1.390
sum 10.791 -10.193 -12.553 19.440
Atomic orbital electron populations
1.21609 0.93853 1.01538 1.02113 1.22622 0.96336 0.99809 0.94588
0.89821 1.22255 0.82861 0.98064 0.97754 1.48561 1.12045 1.65756
1.08182 1.20202 0.84907 0.77110 0.86108 1.90664 1.83452 1.54806
1.14689 1.21607 0.92618 1.03775 0.99240 1.20278 0.89230 1.03610
0.96868 1.20089 0.97185 0.93136 1.02042 1.20847 0.95671 0.94626
0.96445 1.21213 0.94498 1.00133 1.02225 1.17306 0.82426 0.92150
0.97728 1.91534 1.43782 1.91503 1.84346 1.21056 0.98232 0.95967
1.05698 1.17193 0.93499 0.78339 0.99441 1.91560 1.92863 1.32036
1.93872 1.23362 1.03476 1.01258 0.77395 1.21241 0.91528 0.93832
0.86910 0.91609 1.42352 1.86963 1.05302 1.00531 1.19186 1.43465
0.91879 0.83601 0.91038 1.24761 1.02252 0.95341 0.97988 1.69652
1.56262 1.02304 1.29371 0.86277 0.77944 0.77891 0.84094 1.21632
1.21135 1.21157 0.91319 0.93160 0.92849 0.90999 0.91689 0.88624
0.88644 0.89396 0.89576 0.83716 0.83961 0.83380 0.90772 0.92248
0.77849 0.93258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.83 9.31 37.16 0.35 -1.48 16
2 C -0.11 -1.75 3.25 -88.47 -0.29 -2.03 16
3 H 0.08 1.38 8.00 -51.93 -0.42 0.96 16
4 C 0.11 1.65 6.37 -2.53 -0.02 1.64 16
5 N -0.61 -9.46 3.33 -170.52 -0.57 -10.03 16
6 C 0.53 8.07 7.85 -10.98 -0.09 7.99 16
7 O -0.56 -9.90 16.24 5.56 0.09 -9.81 16
8 C -0.13 -1.61 4.87 -27.88 -0.14 -1.74 16
9 C -0.06 -0.67 4.36 -27.88 -0.12 -0.79 16
10 C -0.12 -1.20 5.14 -104.55 -0.54 -1.74 16
11 C -0.06 -0.45 9.66 -39.61 -0.38 -0.83 16
12 C -0.16 -1.25 10.02 -39.51 -0.40 -1.65 16
13 C 0.12 1.14 7.30 -39.43 -0.29 0.86 16
14 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16
15 C -0.19 -1.84 10.01 -39.44 -0.39 -2.23 16
16 C 0.13 1.44 7.24 -39.43 -0.29 1.16 16
17 F -0.13 -1.53 16.66 2.25 0.04 -1.49 16
18 C 0.07 1.17 6.24 -3.07 -0.02 1.15 16
19 C 0.18 3.18 3.06 -66.09 -0.20 2.98 16
20 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16
21 N -0.71 -16.30 5.18 -51.65 -0.27 -16.57 16
22 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16
23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16
24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16
25 N -0.93 -26.71 13.06 55.49 0.72 -25.98 16
26 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16
27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16
33 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16
34 H 0.06 0.88 7.99 -51.93 -0.41 0.46 16
35 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16
36 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16
37 H 0.09 0.88 7.96 -51.93 -0.41 0.46 16
38 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16
39 H 0.15 0.79 8.04 -52.48 -0.42 0.37 16
40 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16
41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16
42 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16
43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
44 H 0.39 9.58 7.71 -40.82 -0.31 9.27 16
45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
LS Contribution 385.48 15.07 5.81 5.81
Total: -1.00 -29.94 385.48 -8.78 -38.72
By element:
Atomic # 1 Polarization: 14.48 SS G_CDS: -6.57 Total: 7.92 kcal
Atomic # 6 Polarization: -0.54 SS G_CDS: -3.05 Total: -3.59 kcal
Atomic # 7 Polarization: -52.47 SS G_CDS: -0.11 Total: -52.58 kcal
Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal
Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -29.94 -8.78 -38.72 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000939447861.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.027 kcal
(2) G-P(sol) polarization free energy of solvation -29.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds