Wall clock time and date at job start Tue Mar 31 2020 21:04:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 110.91134 * 2 1
4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3
5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1
6 6 C 1.34777 * 125.64359 * 204.16353 * 5 4 2
7 7 O 1.21279 * 120.00291 * 359.97438 * 6 5 4
8 8 C 1.50701 * 119.99791 * 179.97438 * 6 5 4
9 9 C 1.53003 * 109.47308 * 180.02562 * 8 6 5
10 10 C 1.50701 * 109.47308 * 180.02562 * 9 8 6
11 11 C 1.38224 * 119.98625 * 99.99392 * 10 9 8
12 12 C 1.38187 * 120.04940 * 179.97438 * 11 10 9
13 13 C 1.38490 * 120.02659 * 0.02562 * 12 11 10
14 14 F 1.35104 * 120.01747 * 179.97438 * 13 12 11
15 15 C 1.38401 * 119.97547 * 359.97438 * 13 12 11
16 16 C 1.38448 * 119.94630 * 359.72688 * 15 13 12
17 17 F 1.35101 * 120.01294 * 180.27200 * 16 15 13
18 18 C 1.47017 * 108.70563 * 24.12485 * 5 4 2
19 19 C 1.54324 * 107.27321 * 358.94388 * 18 5 4
20 20 H 1.08995 * 110.72617 * 96.34448 * 19 18 5
21 21 N 1.46499 * 110.72129 * 219.44397 * 19 18 5
22 22 C 1.36931 * 120.00122 * 273.54344 * 21 19 18
23 23 H 1.08002 * 120.00098 * 0.02562 * 22 21 19
24 24 C 1.38812 * 120.00429 * 180.02562 * 22 21 19
25 25 N 1.31624 * 119.99535 * 359.97438 * 24 22 21
26 26 Si 1.86796 * 120.00187 * 180.27849 * 24 22 21
27 27 H 1.48497 * 109.47173 * 179.72427 * 26 24 22
28 28 H 1.48506 * 109.46866 * 299.71963 * 26 24 22
29 29 H 1.48501 * 109.47438 * 59.72083 * 26 24 22
30 30 H 1.09000 * 109.47369 * 296.10135 * 1 2 3
31 31 H 1.08999 * 109.47009 * 56.10715 * 1 2 3
32 32 H 1.09002 * 109.46507 * 176.10181 * 1 2 3
33 33 H 1.09001 * 110.36963 * 86.07513 * 4 2 1
34 34 H 1.09000 * 110.45879 * 323.79471 * 4 2 1
35 35 H 1.09000 * 109.47418 * 299.99912 * 8 6 5
36 36 H 1.08997 * 109.47056 * 59.99867 * 8 6 5
37 37 H 1.09007 * 109.46691 * 299.99860 * 9 8 6
38 38 H 1.08997 * 109.47217 * 59.99909 * 9 8 6
39 39 H 1.08005 * 119.97680 * 359.97438 * 11 10 9
40 40 H 1.08006 * 119.99049 * 180.02562 * 12 11 10
41 41 H 1.07993 * 120.02789 * 179.97438 * 15 13 12
42 42 H 1.09000 * 109.88283 * 239.52716 * 18 5 4
43 43 H 1.09004 * 110.01221 * 118.43143 * 18 5 4
44 44 H 0.97001 * 119.99790 * 93.53861 * 21 19 18
45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9190 1.0182 0.0000
4 6 2.0853 -0.8067 -1.2002
5 7 3.4272 -1.2430 -0.7731
6 6 4.4482 -1.5602 -1.5938
7 8 4.3016 -1.4981 -2.7961
8 6 5.7719 -1.9921 -1.0174
9 6 6.7504 -2.2910 -2.1550
10 6 8.0740 -2.7234 -1.5787
11 6 8.3969 -4.0662 -1.5213
12 6 9.6104 -4.4642 -0.9935
13 6 10.5043 -3.5179 -0.5210
14 9 11.6905 -3.9072 -0.0045
15 6 10.1821 -2.1731 -0.5779
16 6 8.9686 -1.7752 -1.1125
17 9 8.6551 -0.4625 -1.1738
18 6 3.4675 -1.2739 0.6962
19 6 2.0862 -0.8078 1.2024
20 1 1.4479 -1.6630 1.4241
21 7 2.2286 0.0498 2.3816
22 6 2.3033 -0.5088 3.6295
23 1 2.2576 -1.5817 3.7445
24 6 2.4377 0.3038 4.7469
25 7 2.4938 1.6113 4.6067
26 14 2.5474 -0.4588 6.4485
27 1 2.6922 0.6151 7.4638
28 1 1.3122 -1.2362 6.7231
29 1 3.7248 -1.3616 6.5115
30 1 -0.3634 0.4521 0.9228
31 1 -0.3633 0.5731 -0.8530
32 1 -0.3632 -1.0253 -0.0699
33 1 2.1560 -0.1721 -2.0837
34 1 1.4526 -1.6705 -1.4041
35 1 6.1741 -1.1942 -0.3931
36 1 5.6304 -2.8889 -0.4143
37 1 6.3485 -3.0888 -2.7797
38 1 6.8919 -1.3939 -2.7577
39 1 7.7002 -4.8050 -1.8892
40 1 9.8619 -5.5136 -0.9496
41 1 10.8784 -1.4345 -0.2092
42 1 4.2426 -0.5994 1.0601
43 1 3.6663 -2.2881 1.0427
44 1 2.2700 1.0134 2.2783
45 1 2.5881 2.1792 5.3875
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000939447861.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:04:43
Heat of formation + Delta-G solvation = -114.271157 kcal
Electronic energy + Delta-G solvation = -28688.062060 eV
Core-core repulsion = 24340.535501 eV
Total energy + Delta-G solvation = -4347.526559 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-50.07411 -50.02534 -41.20605 -40.01046 -38.96539 -35.84457 -35.01861 -33.90123
-32.49958 -31.86860 -30.56420 -29.10119 -27.62689 -25.92877 -25.20238 -24.21940
-23.03200 -22.31067 -21.36901 -20.13018 -19.23797 -19.05944 -18.32175 -18.22203
-17.38752 -17.08229 -16.89321 -16.67879 -16.51535 -16.33140 -16.18002 -15.65950
-15.45425 -15.32912 -14.95028 -14.70890 -14.58963 -14.32977 -14.11019 -13.84281
-13.63296 -13.47177 -13.34347 -13.00887 -12.85491 -12.79373 -12.72438 -12.61545
-12.41414 -12.24476 -12.13357 -12.02820 -12.00875 -11.66763 -11.40005 -11.03184
-10.85879 -10.09445 -9.64608 -9.64122 -9.04679 -7.92690 -5.22494 -0.11981
-0.01027 1.51497 1.52813 1.58113 1.58828 1.98151 2.34320 2.58425
2.83926 3.28889 3.39103 3.40849 3.57067 3.62859 3.81688 3.86247
3.90632 3.91505 4.05089 4.11144 4.22865 4.24911 4.37676 4.47262
4.54709 4.63195 4.66097 4.72006 4.81361 4.88835 4.90845 4.92060
4.93166 5.04664 5.09348 5.12701 5.15649 5.26575 5.28221 5.33638
5.49873 5.57007 5.74547 6.27654 6.51997 7.10339 7.35521 8.07544
8.31095 9.30102
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.009287 B = 0.002957 C = 0.002402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3014.117525 B = 9467.961552 C =11655.964738
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.105 4.105
3 H 0.067 0.933
4 C 0.116 3.884
5 N -0.614 5.614
6 C 0.526 3.474
7 O -0.581 6.581
8 C -0.127 4.127
9 C -0.055 4.055
10 C -0.128 4.128
11 C -0.049 4.049
12 C -0.151 4.151
13 C 0.113 3.887
14 F -0.138 7.138
15 C -0.197 4.197
16 C 0.112 3.888
17 F -0.142 7.142
18 C 0.085 3.915
19 C 0.171 3.829
20 H 0.072 0.928
21 N -0.723 5.723
22 C -0.241 4.241
23 H 0.082 0.918
24 C -0.070 4.070
25 N -0.968 5.968
26 Si 0.968 3.032
27 H -0.301 1.301
28 H -0.277 1.277
29 H -0.278 1.278
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.068 0.932
33 H 0.071 0.929
34 H 0.084 0.916
35 H 0.087 0.913
36 H 0.116 0.884
37 H 0.100 0.900
38 H 0.067 0.933
39 H 0.176 0.824
40 H 0.170 0.830
41 H 0.152 0.848
42 H 0.054 0.946
43 H 0.075 0.925
44 H 0.374 0.626
45 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.221 -13.213 -14.063 21.836
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.125 4.125
3 H 0.086 0.914
4 C -0.006 4.006
5 N -0.347 5.347
6 C 0.316 3.684
7 O -0.463 6.463
8 C -0.166 4.166
9 C -0.092 4.092
10 C -0.129 4.129
11 C -0.067 4.067
12 C -0.170 4.170
13 C 0.093 3.907
14 F -0.117 7.117
15 C -0.217 4.217
16 C 0.092 3.908
17 F -0.120 7.120
18 C -0.041 4.041
19 C 0.060 3.940
20 H 0.090 0.910
21 N -0.362 5.362
22 C -0.372 4.372
23 H 0.100 0.900
24 C -0.262 4.262
25 N -0.618 5.618
26 Si 0.797 3.203
27 H -0.228 1.228
28 H -0.203 1.203
29 H -0.204 1.204
30 H 0.065 0.935
31 H 0.089 0.911
32 H 0.087 0.913
33 H 0.090 0.910
34 H 0.102 0.898
35 H 0.105 0.895
36 H 0.134 0.866
37 H 0.118 0.882
38 H 0.086 0.914
39 H 0.193 0.807
40 H 0.188 0.812
41 H 0.170 0.830
42 H 0.073 0.927
43 H 0.094 0.906
44 H 0.207 0.793
45 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 10.235 -13.283 -14.552 22.202
hybrid contribution 0.505 1.000 1.402 1.794
sum 10.739 -12.283 -13.150 20.956
Atomic orbital electron populations
1.21564 0.92323 1.02731 1.01899 1.22530 0.97551 0.98691 0.93728
0.91412 1.22292 0.82722 0.98581 0.97037 1.48610 1.12630 1.65806
1.07677 1.20711 0.85562 0.76388 0.85738 1.90652 1.83935 1.55916
1.15754 1.21623 0.91071 1.04231 0.99724 1.20176 0.89526 1.03254
0.96274 1.20089 0.96489 0.93929 1.02359 1.21172 0.96056 0.94118
0.95339 1.21539 0.93739 1.01169 1.00514 1.17499 0.82657 0.92306
0.98188 1.91523 1.44173 1.91479 1.84511 1.21144 0.98103 0.96652
1.05758 1.17443 0.94448 0.77942 1.00939 1.91513 1.93064 1.33265
1.94195 1.22998 1.01543 1.01526 0.78005 1.21442 0.92573 0.93722
0.86239 0.91023 1.42482 1.87149 1.05192 1.01341 1.19598 1.40705
0.92333 0.84610 0.89987 1.25499 1.03564 0.95738 1.01427 1.69809
1.58829 1.03587 1.29613 0.85301 0.78236 0.76806 0.79945 1.22781
1.20310 1.20364 0.93492 0.91079 0.91267 0.91027 0.89818 0.89457
0.86565 0.88186 0.91434 0.80710 0.81226 0.82987 0.92736 0.90635
0.79350 0.94128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.29 9.31 71.98 0.67 -2.62 16
2 C -0.11 -3.13 3.25 -9.40 -0.03 -3.16 16
3 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16
4 C 0.12 3.17 6.37 86.85 0.55 3.73 16
5 N -0.61 -18.09 3.33 -811.80 -2.70 -20.79 16
6 C 0.53 15.39 7.85 87.66 0.69 16.08 16
7 O -0.58 -20.01 16.24 -3.03 -0.05 -20.06 16
8 C -0.13 -2.90 4.87 29.85 0.15 -2.75 16
9 C -0.05 -1.10 4.36 29.85 0.13 -0.97 16
10 C -0.13 -2.29 5.14 -19.82 -0.10 -2.39 16
11 C -0.05 -0.61 9.66 22.25 0.22 -0.39 16
12 C -0.15 -1.88 10.02 22.32 0.22 -1.66 16
13 C 0.11 1.92 7.30 22.37 0.16 2.08 16
14 F -0.14 -2.55 17.27 44.97 0.78 -1.77 16
15 C -0.20 -3.73 10.01 22.36 0.22 -3.51 16
16 C 0.11 2.36 7.24 22.37 0.16 2.53 16
17 F -0.14 -3.60 16.66 44.97 0.75 -2.85 16
18 C 0.09 2.69 6.24 86.73 0.54 3.23 16
19 C 0.17 5.95 3.06 46.18 0.14 6.10 16
20 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16
21 N -0.72 -33.21 5.18 -317.33 -1.64 -34.85 16
22 C -0.24 -12.28 9.98 84.03 0.84 -11.44 16
23 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16
24 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16
25 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16
26 Si 0.97 43.89 29.55 68.60 2.03 45.91 16
27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16
28 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16
29 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
32 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16
33 H 0.07 1.99 8.04 -2.39 -0.02 1.98 16
34 H 0.08 2.01 7.99 -2.39 -0.02 1.99 16
35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
36 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16
37 H 0.10 1.76 7.96 -2.38 -0.02 1.75 16
38 H 0.07 1.61 7.89 -2.39 -0.02 1.60 16
39 H 0.18 1.11 8.04 -2.91 -0.02 1.09 16
40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16
41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16
42 H 0.05 1.96 8.03 -2.39 -0.02 1.94 16
43 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16
44 H 0.37 18.99 7.71 -92.71 -0.72 18.27 16
45 H 0.25 14.45 8.31 -92.70 -0.77 13.67 16
Total: -1.00 -64.92 385.48 4.77 -60.15
By element:
Atomic # 1 Polarization: 29.07 SS G_CDS: 0.29 Total: 29.36 kcal
Atomic # 6 Polarization: -3.49 SS G_CDS: 5.03 Total: 1.54 kcal
Atomic # 7 Polarization: -108.22 SS G_CDS: -4.06 Total: -112.28 kcal
Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.06 kcal
Atomic # 9 Polarization: -6.15 SS G_CDS: 1.53 Total: -4.63 kcal
Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal
Total: -64.92 4.77 -60.15 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000939447861.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.120 kcal
(2) G-P(sol) polarization free energy of solvation -64.918 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.037 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.271 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds