Wall clock time and date at job start Tue Mar 31 2020 21:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34777 * 125.64359 * 204.16353 * 5 4 2 7 7 O 1.21279 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99791 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47308 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47308 * 180.02562 * 9 8 6 11 11 C 1.38224 * 119.98625 * 99.99392 * 10 9 8 12 12 C 1.38187 * 120.04940 * 179.97438 * 11 10 9 13 13 C 1.38490 * 120.02659 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.01747 * 179.97438 * 13 12 11 15 15 C 1.38401 * 119.97547 * 359.97438 * 13 12 11 16 16 C 1.38448 * 119.94630 * 359.72688 * 15 13 12 17 17 F 1.35101 * 120.01294 * 180.27200 * 16 15 13 18 18 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 19 19 C 1.54324 * 107.27321 * 358.94388 * 18 5 4 20 20 H 1.08995 * 110.72617 * 96.34448 * 19 18 5 21 21 N 1.46499 * 110.72129 * 219.44397 * 19 18 5 22 22 C 1.36931 * 120.00122 * 273.54344 * 21 19 18 23 23 H 1.08002 * 120.00098 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00429 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99535 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 180.27849 * 24 22 21 27 27 H 1.48497 * 109.47173 * 179.72427 * 26 24 22 28 28 H 1.48506 * 109.46866 * 299.71963 * 26 24 22 29 29 H 1.48501 * 109.47438 * 59.72083 * 26 24 22 30 30 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 31 31 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 32 32 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 33 33 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 34 34 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 35 35 H 1.09000 * 109.47418 * 299.99912 * 8 6 5 36 36 H 1.08997 * 109.47056 * 59.99867 * 8 6 5 37 37 H 1.09007 * 109.46691 * 299.99860 * 9 8 6 38 38 H 1.08997 * 109.47217 * 59.99909 * 9 8 6 39 39 H 1.08005 * 119.97680 * 359.97438 * 11 10 9 40 40 H 1.08006 * 119.99049 * 180.02562 * 12 11 10 41 41 H 1.07993 * 120.02789 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.88283 * 239.52716 * 18 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 18 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 21 19 18 45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4981 -2.7961 8 6 5.7719 -1.9921 -1.0174 9 6 6.7504 -2.2910 -2.1550 10 6 8.0740 -2.7234 -1.5787 11 6 8.3969 -4.0662 -1.5213 12 6 9.6104 -4.4642 -0.9935 13 6 10.5043 -3.5179 -0.5210 14 9 11.6905 -3.9072 -0.0045 15 6 10.1821 -2.1731 -0.5779 16 6 8.9686 -1.7752 -1.1125 17 9 8.6551 -0.4625 -1.1738 18 6 3.4675 -1.2739 0.6962 19 6 2.0862 -0.8078 1.2024 20 1 1.4479 -1.6630 1.4241 21 7 2.2286 0.0498 2.3816 22 6 2.3033 -0.5088 3.6295 23 1 2.2576 -1.5817 3.7445 24 6 2.4377 0.3038 4.7469 25 7 2.4938 1.6113 4.6067 26 14 2.5474 -0.4588 6.4485 27 1 2.6922 0.6151 7.4638 28 1 1.3122 -1.2362 6.7231 29 1 3.7248 -1.3616 6.5115 30 1 -0.3634 0.4521 0.9228 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3632 -1.0253 -0.0699 33 1 2.1560 -0.1721 -2.0837 34 1 1.4526 -1.6705 -1.4041 35 1 6.1741 -1.1942 -0.3931 36 1 5.6304 -2.8889 -0.4143 37 1 6.3485 -3.0888 -2.7797 38 1 6.8919 -1.3939 -2.7577 39 1 7.7002 -4.8050 -1.8892 40 1 9.8619 -5.5136 -0.9496 41 1 10.8784 -1.4345 -0.2092 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939447861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:43 Heat of formation + Delta-G solvation = -114.271157 kcal Electronic energy + Delta-G solvation = -28688.062060 eV Core-core repulsion = 24340.535501 eV Total energy + Delta-G solvation = -4347.526559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.07411 -50.02534 -41.20605 -40.01046 -38.96539 -35.84457 -35.01861 -33.90123 -32.49958 -31.86860 -30.56420 -29.10119 -27.62689 -25.92877 -25.20238 -24.21940 -23.03200 -22.31067 -21.36901 -20.13018 -19.23797 -19.05944 -18.32175 -18.22203 -17.38752 -17.08229 -16.89321 -16.67879 -16.51535 -16.33140 -16.18002 -15.65950 -15.45425 -15.32912 -14.95028 -14.70890 -14.58963 -14.32977 -14.11019 -13.84281 -13.63296 -13.47177 -13.34347 -13.00887 -12.85491 -12.79373 -12.72438 -12.61545 -12.41414 -12.24476 -12.13357 -12.02820 -12.00875 -11.66763 -11.40005 -11.03184 -10.85879 -10.09445 -9.64608 -9.64122 -9.04679 -7.92690 -5.22494 -0.11981 -0.01027 1.51497 1.52813 1.58113 1.58828 1.98151 2.34320 2.58425 2.83926 3.28889 3.39103 3.40849 3.57067 3.62859 3.81688 3.86247 3.90632 3.91505 4.05089 4.11144 4.22865 4.24911 4.37676 4.47262 4.54709 4.63195 4.66097 4.72006 4.81361 4.88835 4.90845 4.92060 4.93166 5.04664 5.09348 5.12701 5.15649 5.26575 5.28221 5.33638 5.49873 5.57007 5.74547 6.27654 6.51997 7.10339 7.35521 8.07544 8.31095 9.30102 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.002957 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.117525 B = 9467.961552 C =11655.964738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.067 0.933 4 C 0.116 3.884 5 N -0.614 5.614 6 C 0.526 3.474 7 O -0.581 6.581 8 C -0.127 4.127 9 C -0.055 4.055 10 C -0.128 4.128 11 C -0.049 4.049 12 C -0.151 4.151 13 C 0.113 3.887 14 F -0.138 7.138 15 C -0.197 4.197 16 C 0.112 3.888 17 F -0.142 7.142 18 C 0.085 3.915 19 C 0.171 3.829 20 H 0.072 0.928 21 N -0.723 5.723 22 C -0.241 4.241 23 H 0.082 0.918 24 C -0.070 4.070 25 N -0.968 5.968 26 Si 0.968 3.032 27 H -0.301 1.301 28 H -0.277 1.277 29 H -0.278 1.278 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.176 0.824 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 -13.213 -14.063 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.086 0.914 4 C -0.006 4.006 5 N -0.347 5.347 6 C 0.316 3.684 7 O -0.463 6.463 8 C -0.166 4.166 9 C -0.092 4.092 10 C -0.129 4.129 11 C -0.067 4.067 12 C -0.170 4.170 13 C 0.093 3.907 14 F -0.117 7.117 15 C -0.217 4.217 16 C 0.092 3.908 17 F -0.120 7.120 18 C -0.041 4.041 19 C 0.060 3.940 20 H 0.090 0.910 21 N -0.362 5.362 22 C -0.372 4.372 23 H 0.100 0.900 24 C -0.262 4.262 25 N -0.618 5.618 26 Si 0.797 3.203 27 H -0.228 1.228 28 H -0.203 1.203 29 H -0.204 1.204 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.193 0.807 40 H 0.188 0.812 41 H 0.170 0.830 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.207 0.793 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.235 -13.283 -14.552 22.202 hybrid contribution 0.505 1.000 1.402 1.794 sum 10.739 -12.283 -13.150 20.956 Atomic orbital electron populations 1.21564 0.92323 1.02731 1.01899 1.22530 0.97551 0.98691 0.93728 0.91412 1.22292 0.82722 0.98581 0.97037 1.48610 1.12630 1.65806 1.07677 1.20711 0.85562 0.76388 0.85738 1.90652 1.83935 1.55916 1.15754 1.21623 0.91071 1.04231 0.99724 1.20176 0.89526 1.03254 0.96274 1.20089 0.96489 0.93929 1.02359 1.21172 0.96056 0.94118 0.95339 1.21539 0.93739 1.01169 1.00514 1.17499 0.82657 0.92306 0.98188 1.91523 1.44173 1.91479 1.84511 1.21144 0.98103 0.96652 1.05758 1.17443 0.94448 0.77942 1.00939 1.91513 1.93064 1.33265 1.94195 1.22998 1.01543 1.01526 0.78005 1.21442 0.92573 0.93722 0.86239 0.91023 1.42482 1.87149 1.05192 1.01341 1.19598 1.40705 0.92333 0.84610 0.89987 1.25499 1.03564 0.95738 1.01427 1.69809 1.58829 1.03587 1.29613 0.85301 0.78236 0.76806 0.79945 1.22781 1.20310 1.20364 0.93492 0.91079 0.91267 0.91027 0.89818 0.89457 0.86565 0.88186 0.91434 0.80710 0.81226 0.82987 0.92736 0.90635 0.79350 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.31 71.98 0.67 -2.62 16 2 C -0.11 -3.13 3.25 -9.40 -0.03 -3.16 16 3 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16 4 C 0.12 3.17 6.37 86.85 0.55 3.73 16 5 N -0.61 -18.09 3.33 -811.80 -2.70 -20.79 16 6 C 0.53 15.39 7.85 87.66 0.69 16.08 16 7 O -0.58 -20.01 16.24 -3.03 -0.05 -20.06 16 8 C -0.13 -2.90 4.87 29.85 0.15 -2.75 16 9 C -0.05 -1.10 4.36 29.85 0.13 -0.97 16 10 C -0.13 -2.29 5.14 -19.82 -0.10 -2.39 16 11 C -0.05 -0.61 9.66 22.25 0.22 -0.39 16 12 C -0.15 -1.88 10.02 22.32 0.22 -1.66 16 13 C 0.11 1.92 7.30 22.37 0.16 2.08 16 14 F -0.14 -2.55 17.27 44.97 0.78 -1.77 16 15 C -0.20 -3.73 10.01 22.36 0.22 -3.51 16 16 C 0.11 2.36 7.24 22.37 0.16 2.53 16 17 F -0.14 -3.60 16.66 44.97 0.75 -2.85 16 18 C 0.09 2.69 6.24 86.73 0.54 3.23 16 19 C 0.17 5.95 3.06 46.18 0.14 6.10 16 20 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 21 N -0.72 -33.21 5.18 -317.33 -1.64 -34.85 16 22 C -0.24 -12.28 9.98 84.03 0.84 -11.44 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 25 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16 26 Si 0.97 43.89 29.55 68.60 2.03 45.91 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 29 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.07 1.99 8.04 -2.39 -0.02 1.98 16 34 H 0.08 2.01 7.99 -2.39 -0.02 1.99 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.10 1.76 7.96 -2.38 -0.02 1.75 16 38 H 0.07 1.61 7.89 -2.39 -0.02 1.60 16 39 H 0.18 1.11 8.04 -2.91 -0.02 1.09 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.05 1.96 8.03 -2.39 -0.02 1.94 16 43 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.37 18.99 7.71 -92.71 -0.72 18.27 16 45 H 0.25 14.45 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -64.92 385.48 4.77 -60.15 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.29 Total: 29.36 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.03 Total: 1.54 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.06 Total: -112.28 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 1.53 Total: -4.63 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -64.92 4.77 -60.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939447861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.120 kcal (2) G-P(sol) polarization free energy of solvation -64.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds