Wall clock time and date at job start Tue Mar 31 2020 20:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49746 * 2 1 4 4 C 1.53197 * 109.49290 * 239.91101 * 2 1 3 5 5 N 1.46928 * 108.77078 * 185.41340 * 4 2 1 6 6 C 1.36946 * 120.62485 * 233.62918 * 5 4 2 7 7 H 1.07999 * 119.99844 * 151.82777 * 6 5 4 8 8 C 1.38808 * 120.00095 * 331.81677 * 6 5 4 9 9 N 1.31622 * 120.00370 * 343.08435 * 8 6 5 10 10 Si 1.86799 * 119.99849 * 163.07308 * 8 6 5 11 11 H 1.48500 * 109.46925 * 90.00651 * 10 8 6 12 12 H 1.48501 * 109.47264 * 210.00544 * 10 8 6 13 13 H 1.48498 * 109.47214 * 330.00724 * 10 8 6 14 14 C 1.46922 * 118.74193 * 53.60610 * 5 4 2 15 15 C 1.53162 * 108.76762 * 306.38853 * 14 5 4 16 16 C 1.53038 * 109.50042 * 120.07011 * 2 1 3 17 17 H 1.08993 * 109.46134 * 61.29318 * 16 2 1 18 18 N 1.46497 * 109.45911 * 301.31878 * 16 2 1 19 19 C 1.34778 * 119.99933 * 154.97228 * 18 16 2 20 20 O 1.21287 * 119.99793 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00131 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46823 * 179.97438 * 21 19 18 23 23 C 1.38247 * 119.96681 * 269.72727 * 22 21 19 24 24 C 1.38218 * 120.07215 * 179.73246 * 23 22 21 25 25 C 1.38408 * 119.99887 * 0.54043 * 24 23 22 26 26 F 1.35096 * 120.03867 * 179.75233 * 25 24 23 27 27 C 1.38660 * 119.92759 * 359.73098 * 25 24 23 28 28 F 1.35100 * 120.03293 * 180.02562 * 27 25 24 29 29 C 1.38214 * 119.96171 * 90.00409 * 22 21 19 30 30 H 1.09007 * 109.46878 * 299.93006 * 1 2 3 31 31 H 1.08997 * 109.47514 * 59.92699 * 1 2 3 32 32 H 1.09003 * 109.46858 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58419 * 305.19193 * 4 2 1 34 34 H 1.08995 * 109.58814 * 65.62190 * 4 2 1 35 35 H 0.96992 * 120.00450 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.58687 * 66.17825 * 14 5 4 37 37 H 1.09003 * 109.58492 * 186.46074 * 14 5 4 38 38 H 1.09003 * 109.50096 * 294.68057 * 15 14 5 39 39 H 1.09002 * 109.47686 * 174.59658 * 15 14 5 40 40 H 0.96999 * 120.00551 * 334.98145 * 18 16 2 41 41 H 1.08994 * 109.46678 * 299.99828 * 21 19 18 42 42 H 1.08997 * 109.46807 * 60.00238 * 21 19 18 43 43 H 1.08003 * 119.96227 * 359.97438 * 23 22 21 44 44 H 1.07995 * 120.00069 * 180.27480 * 24 23 22 45 45 H 1.08000 * 120.00246 * 359.96949 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7240 -1.2496 5 7 3.5045 -0.8293 -1.1695 6 6 4.2935 -0.3788 -2.1942 7 1 5.2959 -0.0319 -1.9915 8 6 3.8048 -0.3682 -3.4934 9 7 2.7417 -1.0801 -3.8025 10 14 4.6557 0.6565 -4.8030 11 1 5.7025 -0.1603 -5.4680 12 1 3.6587 1.0990 -5.8107 13 1 5.2824 1.8455 -4.1716 14 6 4.1053 -1.4266 0.0309 15 6 3.5709 -0.6947 1.2656 16 6 2.0409 -0.7228 1.2484 17 1 1.6968 -1.7569 1.2356 18 7 1.5270 -0.0522 2.4452 19 6 1.3985 -0.7373 3.5988 20 8 1.7078 -1.9091 3.6459 21 6 0.8693 -0.0476 4.8298 22 6 0.8239 -1.0273 5.9741 23 6 -0.3148 -1.7796 6.1943 24 6 -0.3568 -2.6828 7.2398 25 6 0.7380 -2.8267 8.0743 26 9 0.6960 -3.7056 9.0994 27 6 1.8781 -2.0681 7.8568 28 9 2.9481 -2.2073 8.6697 29 6 1.9189 -1.1686 6.8056 30 1 -0.3633 0.5128 0.8907 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7218 -1.2977 34 1 1.7636 -0.1583 -2.1389 35 1 2.4000 -1.0724 -4.7102 36 1 3.8376 -2.4817 0.0870 37 1 5.1898 -1.3268 -0.0150 38 1 3.9160 0.3392 1.2534 39 1 3.9338 -1.1893 2.1666 40 1 1.2791 0.8848 2.4075 41 1 1.5233 0.7847 5.0894 42 1 -0.1351 0.3271 4.6328 43 1 -1.1712 -1.6643 5.5464 44 1 -1.2454 -3.2731 7.4081 45 1 2.8065 -0.5775 6.6350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942583044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:39 Heat of formation + Delta-G solvation = -90.095970 kcal Electronic energy + Delta-G solvation = -29000.683203 eV Core-core repulsion = 24654.204958 eV Total energy + Delta-G solvation = -4346.478245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.68898 -48.76632 -40.25895 -39.04340 -37.55956 -34.54665 -33.02002 -32.23254 -31.87208 -31.10603 -29.56202 -27.70475 -25.96345 -24.95287 -23.58812 -22.76589 -21.86870 -20.91055 -20.26823 -19.29327 -18.19601 -17.48018 -17.29114 -17.14395 -16.63921 -16.44114 -15.91751 -15.22964 -15.17753 -14.88591 -14.75201 -14.47462 -14.23344 -13.97218 -13.83911 -13.69395 -13.37331 -13.13679 -12.93104 -12.64635 -12.34545 -12.20532 -12.16558 -11.99018 -11.57012 -11.49953 -11.34241 -11.10382 -10.75930 -10.69713 -10.39398 -10.22165 -10.03844 -9.95683 -9.72956 -9.51998 -9.34326 -8.89051 -8.74957 -8.48695 -6.71109 -5.82700 -3.24986 0.59478 0.71155 2.68318 2.92600 3.34603 3.41981 3.43278 3.44290 3.51771 4.03741 4.16418 4.26343 4.46508 4.65432 4.75956 4.81905 4.97856 5.12371 5.20041 5.29168 5.42079 5.42494 5.50482 5.53668 5.59307 5.63834 5.68783 5.83662 6.01010 6.03773 6.09328 6.20223 6.31117 6.42225 6.44410 6.46685 6.55078 6.64695 6.76339 6.90083 6.96186 7.29487 7.55940 7.66760 7.76990 8.32069 8.41563 9.17644 9.80720 10.37682 11.26136 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.002182 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.174985 B =12829.573094 C =13286.373350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.147 3.853 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.082 0.918 18 N -0.721 5.721 19 C 0.509 3.491 20 O -0.533 6.533 21 C -0.106 4.106 22 C -0.042 4.042 23 C -0.086 4.086 24 C -0.123 4.123 25 C 0.063 3.937 26 F -0.131 7.131 27 C 0.069 3.931 28 F -0.130 7.130 29 C -0.111 4.111 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.396 0.604 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 4.028 20.955 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.180 4.180 16 C 0.054 3.946 17 H 0.100 0.900 18 N -0.371 5.371 19 C 0.294 3.706 20 O -0.410 6.410 21 C -0.146 4.146 22 C -0.042 4.042 23 C -0.104 4.104 24 C -0.142 4.142 25 C 0.043 3.957 26 F -0.110 7.110 27 C 0.049 3.951 28 F -0.108 7.108 29 C -0.130 4.130 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.230 0.770 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.608 3.106 20.867 22.785 hybrid contribution 0.515 0.726 -0.405 0.978 sum -8.093 3.832 20.462 22.335 Atomic orbital electron populations 1.21726 0.95910 1.01441 1.00572 1.22166 0.94670 1.00615 0.96850 0.91435 1.20805 0.83083 0.97069 0.93626 1.44099 1.01729 1.69381 1.16317 1.19174 0.98020 1.35296 0.85742 0.91682 1.25053 0.98531 0.99016 0.97012 1.70020 1.25661 1.40220 1.18794 0.86313 0.78688 0.80328 0.81540 1.21369 1.21554 1.20508 1.20869 0.96692 0.94288 0.86161 1.22377 0.94846 1.01280 0.99483 1.21065 0.93808 0.97175 0.82577 0.90025 1.46308 1.65947 1.14339 1.10509 1.20336 0.78585 0.87355 0.84277 1.90753 1.49519 1.16105 1.84609 1.20738 1.04540 0.97872 0.91448 1.19190 0.93099 0.97095 0.94851 1.20948 0.98392 0.94520 0.96528 1.21036 0.97730 1.00212 0.95206 1.17698 0.95267 0.93059 0.89672 1.91522 1.96785 1.66316 1.56340 1.17605 0.84130 1.00144 0.93213 1.91531 1.53311 1.94896 1.71083 1.20919 0.99936 0.98544 0.93631 0.93888 0.92617 0.93037 0.96152 0.89018 0.93588 0.96230 0.92572 0.92334 0.92727 0.77044 0.87514 0.87368 0.84239 0.83610 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.03 37.16 0.34 -1.63 16 2 C -0.12 -2.08 2.46 -90.50 -0.22 -2.30 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.18 4.08 4.59 -3.71 -0.02 4.07 16 5 N -0.59 -14.46 2.99 -172.34 -0.52 -14.98 16 6 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 7 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 8 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 9 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 10 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.15 3.10 6.52 -3.73 -0.02 3.07 16 15 C -0.14 -2.44 5.65 -26.63 -0.15 -2.59 16 16 C 0.16 2.53 1.88 -67.89 -0.13 2.41 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 18 N -0.72 -8.62 4.36 -53.77 -0.23 -8.85 16 19 C 0.51 6.17 7.79 -10.98 -0.09 6.08 16 20 O -0.53 -8.92 15.70 5.55 0.09 -8.84 16 21 C -0.11 -0.78 5.83 -29.03 -0.17 -0.95 16 22 C -0.04 -0.37 4.37 -104.62 -0.46 -0.83 16 23 C -0.09 -0.71 9.69 -39.59 -0.38 -1.09 16 24 C -0.12 -1.06 10.02 -39.53 -0.40 -1.46 16 25 C 0.06 0.68 7.31 -39.36 -0.29 0.39 16 26 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 27 C 0.07 0.77 7.31 -39.36 -0.29 0.49 16 28 F -0.13 -1.58 17.18 2.25 0.04 -1.55 16 29 C -0.11 -1.10 9.68 -39.53 -0.38 -1.48 16 30 H 0.04 0.49 7.36 -51.93 -0.38 0.11 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 35 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.40 3.59 8.31 -40.82 -0.34 3.25 16 41 H 0.11 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -32.06 376.91 -8.66 -40.72 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.46 Total: 0.89 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.89 Total: -2.78 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.13 Total: -48.82 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.06 -8.66 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942583044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.377 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds