Wall clock time and date at job start Tue Mar 31 2020 20:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49746 * 2 1 4 4 C 1.53197 * 109.49290 * 239.91101 * 2 1 3 5 5 N 1.46928 * 108.77078 * 185.41340 * 4 2 1 6 6 C 1.36946 * 120.62485 * 233.62918 * 5 4 2 7 7 H 1.07999 * 119.99844 * 151.82777 * 6 5 4 8 8 C 1.38808 * 120.00095 * 331.81677 * 6 5 4 9 9 N 1.31622 * 120.00370 * 343.08435 * 8 6 5 10 10 Si 1.86799 * 119.99849 * 163.07308 * 8 6 5 11 11 H 1.48500 * 109.46925 * 90.00651 * 10 8 6 12 12 H 1.48501 * 109.47264 * 210.00544 * 10 8 6 13 13 H 1.48498 * 109.47214 * 330.00724 * 10 8 6 14 14 C 1.46922 * 118.74193 * 53.60610 * 5 4 2 15 15 C 1.53162 * 108.76762 * 306.38853 * 14 5 4 16 16 C 1.53038 * 109.50042 * 120.07011 * 2 1 3 17 17 H 1.08993 * 109.46134 * 61.29318 * 16 2 1 18 18 N 1.46497 * 109.45911 * 301.31878 * 16 2 1 19 19 C 1.34778 * 119.99933 * 154.97228 * 18 16 2 20 20 O 1.21287 * 119.99793 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00131 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46823 * 179.97438 * 21 19 18 23 23 C 1.38247 * 119.96681 * 269.72727 * 22 21 19 24 24 C 1.38218 * 120.07215 * 179.73246 * 23 22 21 25 25 C 1.38408 * 119.99887 * 0.54043 * 24 23 22 26 26 F 1.35096 * 120.03867 * 179.75233 * 25 24 23 27 27 C 1.38660 * 119.92759 * 359.73098 * 25 24 23 28 28 F 1.35100 * 120.03293 * 180.02562 * 27 25 24 29 29 C 1.38214 * 119.96171 * 90.00409 * 22 21 19 30 30 H 1.09007 * 109.46878 * 299.93006 * 1 2 3 31 31 H 1.08997 * 109.47514 * 59.92699 * 1 2 3 32 32 H 1.09003 * 109.46858 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58419 * 305.19193 * 4 2 1 34 34 H 1.08995 * 109.58814 * 65.62190 * 4 2 1 35 35 H 0.96992 * 120.00450 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.58687 * 66.17825 * 14 5 4 37 37 H 1.09003 * 109.58492 * 186.46074 * 14 5 4 38 38 H 1.09003 * 109.50096 * 294.68057 * 15 14 5 39 39 H 1.09002 * 109.47686 * 174.59658 * 15 14 5 40 40 H 0.96999 * 120.00551 * 334.98145 * 18 16 2 41 41 H 1.08994 * 109.46678 * 299.99828 * 21 19 18 42 42 H 1.08997 * 109.46807 * 60.00238 * 21 19 18 43 43 H 1.08003 * 119.96227 * 359.97438 * 23 22 21 44 44 H 1.07995 * 120.00069 * 180.27480 * 24 23 22 45 45 H 1.08000 * 120.00246 * 359.96949 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7240 -1.2496 5 7 3.5045 -0.8293 -1.1695 6 6 4.2935 -0.3788 -2.1942 7 1 5.2959 -0.0319 -1.9915 8 6 3.8048 -0.3682 -3.4934 9 7 2.7417 -1.0801 -3.8025 10 14 4.6557 0.6565 -4.8030 11 1 5.7025 -0.1603 -5.4680 12 1 3.6587 1.0990 -5.8107 13 1 5.2824 1.8455 -4.1716 14 6 4.1053 -1.4266 0.0309 15 6 3.5709 -0.6947 1.2656 16 6 2.0409 -0.7228 1.2484 17 1 1.6968 -1.7569 1.2356 18 7 1.5270 -0.0522 2.4452 19 6 1.3985 -0.7373 3.5988 20 8 1.7078 -1.9091 3.6459 21 6 0.8693 -0.0476 4.8298 22 6 0.8239 -1.0273 5.9741 23 6 -0.3148 -1.7796 6.1943 24 6 -0.3568 -2.6828 7.2398 25 6 0.7380 -2.8267 8.0743 26 9 0.6960 -3.7056 9.0994 27 6 1.8781 -2.0681 7.8568 28 9 2.9481 -2.2073 8.6697 29 6 1.9189 -1.1686 6.8056 30 1 -0.3633 0.5128 0.8907 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7218 -1.2977 34 1 1.7636 -0.1583 -2.1389 35 1 2.4000 -1.0724 -4.7102 36 1 3.8376 -2.4817 0.0870 37 1 5.1898 -1.3268 -0.0150 38 1 3.9160 0.3392 1.2534 39 1 3.9338 -1.1893 2.1666 40 1 1.2791 0.8848 2.4075 41 1 1.5233 0.7847 5.0894 42 1 -0.1351 0.3271 4.6328 43 1 -1.1712 -1.6643 5.5464 44 1 -1.2454 -3.2731 7.4081 45 1 2.8065 -0.5775 6.6350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942583044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:38 Heat of formation + Delta-G solvation = -108.717623 kcal Electronic energy + Delta-G solvation = -29001.490698 eV Core-core repulsion = 24654.204958 eV Total energy + Delta-G solvation = -4347.285740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.52410 -49.61181 -41.22690 -39.98997 -38.90151 -36.08957 -34.07086 -33.53016 -33.38805 -31.80452 -31.17801 -28.58222 -27.52261 -26.59396 -24.32319 -24.06922 -22.92422 -22.47611 -21.34615 -20.74249 -19.02485 -18.80310 -18.22539 -18.01400 -17.84610 -17.31702 -17.15556 -16.68220 -16.13048 -16.04257 -15.60950 -15.54436 -15.49522 -15.19758 -15.03813 -14.90249 -14.61458 -14.49727 -14.25026 -14.01432 -13.49090 -13.22607 -13.03000 -12.91382 -12.88681 -12.83666 -12.68491 -12.52044 -12.45237 -12.23467 -12.01165 -11.82231 -11.70123 -11.51615 -11.22082 -10.81761 -10.55636 -10.05422 -9.89862 -9.64588 -8.69709 -7.87771 -5.33662 -0.13702 0.02899 1.47958 1.49194 1.59110 1.77434 2.12686 2.51731 2.57016 2.79780 3.27640 3.29050 3.48945 3.63770 3.64932 3.81542 4.00888 4.03898 4.12216 4.14752 4.25593 4.37981 4.45023 4.59991 4.64129 4.73091 4.77471 4.78815 4.86917 4.89665 4.93712 4.97562 5.03199 5.04545 5.11619 5.22249 5.33349 5.35929 5.39718 5.52857 5.63791 5.67382 5.74943 5.76535 6.39157 6.72596 7.14809 7.42052 7.84395 8.37034 9.18924 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.002182 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.174985 B =12829.573094 C =13286.373350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.075 0.925 4 C 0.186 3.814 5 N -0.610 5.610 6 C -0.264 4.264 7 H 0.066 0.934 8 C -0.049 4.049 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.268 1.268 14 C 0.143 3.857 15 C -0.125 4.125 16 C 0.171 3.829 17 H 0.053 0.947 18 N -0.708 5.708 19 C 0.509 3.491 20 O -0.584 6.584 21 C -0.094 4.094 22 C -0.048 4.048 23 C -0.083 4.083 24 C -0.122 4.122 25 C 0.042 3.958 26 F -0.143 7.143 27 C 0.043 3.957 28 F -0.144 7.144 29 C -0.117 4.117 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.040 0.960 33 H -0.011 1.011 34 H 0.061 0.939 35 H 0.251 0.749 36 H 0.002 0.998 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.416 0.584 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 6.560 21.960 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 H 0.093 0.907 4 C 0.060 3.940 5 N -0.333 5.333 6 C -0.394 4.394 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.795 3.205 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.193 1.193 14 C 0.017 3.983 15 C -0.165 4.165 16 C 0.065 3.935 17 H 0.072 0.928 18 N -0.359 5.359 19 C 0.297 3.703 20 O -0.463 6.463 21 C -0.133 4.133 22 C -0.049 4.049 23 C -0.101 4.101 24 C -0.140 4.140 25 C 0.022 3.978 26 F -0.122 7.122 27 C 0.023 3.977 28 F -0.123 7.123 29 C -0.136 4.136 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.007 0.993 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.253 0.747 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.186 0.814 44 H 0.186 0.814 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.875 5.682 21.912 24.697 hybrid contribution 0.923 -0.149 -0.712 1.175 sum -8.953 5.532 21.200 23.669 Atomic orbital electron populations 1.21680 0.93370 1.01422 1.02479 1.21877 0.96656 0.99864 0.94342 0.90661 1.20634 0.82359 0.95563 0.95438 1.44374 1.02383 1.69826 1.16735 1.19500 0.98401 1.34872 0.86652 0.91618 1.25808 0.99444 1.00214 0.98975 1.70183 1.27212 1.41752 1.18919 0.85284 0.77439 0.78955 0.78794 1.21491 1.21678 1.19309 1.20963 0.96746 0.93781 0.86849 1.22171 0.95906 1.01069 0.97347 1.20556 0.92758 0.96047 0.84098 0.92848 1.45994 1.65616 1.15165 1.09155 1.21147 0.77270 0.86750 0.85110 1.90754 1.51584 1.18608 1.85378 1.20794 1.07212 0.97464 0.87799 1.19481 0.92896 0.97489 0.95053 1.21361 0.99096 0.93406 0.96200 1.21357 0.97703 1.00305 0.94637 1.18038 0.96141 0.93430 0.90202 1.91484 1.96894 1.66784 1.56995 1.17936 0.84177 1.01504 0.94103 1.91484 1.54004 1.95135 1.71645 1.21146 1.00844 0.98276 0.93303 0.89826 0.92829 0.94048 0.99318 0.92054 0.94017 0.97973 0.92709 0.91358 0.92260 0.74669 0.84452 0.83388 0.81420 0.81381 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.03 71.98 0.65 -2.79 16 2 C -0.11 -3.50 2.46 -10.71 -0.03 -3.53 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.19 8.64 4.59 86.36 0.40 9.04 16 5 N -0.61 -30.40 2.99 -699.16 -2.09 -32.49 16 6 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 7 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 8 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 9 N -0.93 -54.60 11.20 21.65 0.24 -54.36 16 10 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 14 C 0.14 6.13 6.52 86.35 0.56 6.70 16 15 C -0.12 -4.23 5.65 30.66 0.17 -4.06 16 16 C 0.17 5.25 1.88 45.02 0.08 5.33 16 17 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 18 N -0.71 -14.28 4.36 -442.41 -1.93 -16.21 16 19 C 0.51 10.53 7.79 87.66 0.68 11.21 16 20 O -0.58 -18.50 15.70 -3.05 -0.05 -18.54 16 21 C -0.09 -0.91 5.83 29.10 0.17 -0.74 16 22 C -0.05 -0.71 4.37 -19.87 -0.09 -0.80 16 23 C -0.08 -1.09 9.69 22.27 0.22 -0.88 16 24 C -0.12 -1.86 10.02 22.31 0.22 -1.64 16 25 C 0.04 0.88 7.31 22.41 0.16 1.05 16 26 F -0.14 -3.37 17.18 44.97 0.77 -2.60 16 27 C 0.04 0.95 7.31 22.41 0.16 1.11 16 28 F -0.14 -3.62 17.18 44.97 0.77 -2.85 16 29 C -0.12 -2.10 9.68 22.30 0.22 -1.89 16 30 H 0.08 1.52 7.36 -2.38 -0.02 1.50 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.06 3.21 6.06 -2.39 -0.01 3.20 16 35 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 37 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.42 5.33 8.31 -92.71 -0.77 4.56 16 41 H 0.14 0.61 8.08 -2.39 -0.02 0.59 16 42 H 0.15 0.37 8.08 -2.39 -0.02 0.35 16 43 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -74.25 376.91 4.80 -69.45 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.24 Total: 9.31 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.81 Total: 2.28 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -3.78 Total: -103.06 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 1.55 Total: -5.45 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.25 4.80 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942583044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.270 kcal (2) G-P(sol) polarization free energy of solvation -74.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds