Wall clock time and date at job start Tue Mar 31 2020 20:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.52103 * 2 1 4 4 C 1.53188 * 109.49548 * 120.07850 * 2 1 3 5 5 N 1.46928 * 108.77402 * 174.58714 * 4 2 1 6 6 C 1.36940 * 120.63147 * 126.41571 * 5 4 2 7 7 H 1.07997 * 119.99655 * 331.81282 * 6 5 4 8 8 C 1.38813 * 120.00064 * 151.81129 * 6 5 4 9 9 N 1.31615 * 119.99942 * 343.07905 * 8 6 5 10 10 Si 1.86799 * 119.99873 * 163.08163 * 8 6 5 11 11 H 1.48499 * 109.47424 * 89.99675 * 10 8 6 12 12 H 1.48499 * 109.47268 * 210.00046 * 10 8 6 13 13 H 1.48506 * 109.47070 * 329.99895 * 10 8 6 14 14 C 1.46926 * 118.74134 * 306.39428 * 5 4 2 15 15 C 1.53195 * 108.77175 * 53.60495 * 14 5 4 16 16 C 1.53033 * 109.31716 * 305.36497 * 15 14 5 17 17 H 1.09004 * 109.46149 * 301.34981 * 16 15 14 18 18 N 1.46499 * 109.45332 * 181.37889 * 16 15 14 19 19 C 1.34779 * 119.99643 * 84.94049 * 18 16 15 20 20 O 1.21276 * 120.00278 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99423 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46560 * 179.97438 * 21 19 18 23 23 C 1.38261 * 119.96308 * 269.71985 * 22 21 19 24 24 C 1.38216 * 120.06691 * 179.76876 * 23 22 21 25 25 C 1.38415 * 120.00000 * 0.51329 * 24 23 22 26 26 F 1.35094 * 120.03403 * 179.72465 * 25 24 23 27 27 C 1.38650 * 119.92682 * 359.74501 * 25 24 23 28 28 F 1.35102 * 120.02894 * 180.02562 * 27 25 24 29 29 C 1.38218 * 119.96346 * 90.00248 * 22 21 19 30 30 H 1.09003 * 109.46711 * 299.91911 * 1 2 3 31 31 H 1.09000 * 109.46844 * 59.92173 * 1 2 3 32 32 H 1.08995 * 109.46909 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.58451 * 54.80276 * 4 2 1 34 34 H 1.09004 * 109.71009 * 294.44555 * 4 2 1 35 35 H 0.96999 * 119.99981 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58917 * 173.39402 * 14 5 4 37 37 H 1.08998 * 109.58284 * 293.82323 * 14 5 4 38 38 H 1.09001 * 109.49730 * 65.31939 * 15 14 5 39 39 H 1.09001 * 109.49435 * 185.41504 * 15 14 5 40 40 H 0.96993 * 119.99912 * 264.94178 * 18 16 15 41 41 H 1.09000 * 109.47540 * 299.99682 * 21 19 18 42 42 H 1.09000 * 109.47755 * 60.00320 * 21 19 18 43 43 H 1.07998 * 119.96433 * 0.02610 * 23 22 21 44 44 H 1.08002 * 119.99885 * 180.25299 * 24 23 22 45 45 H 1.08001 * 120.00013 * 359.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2936 -0.3792 2.1945 7 1 3.9501 0.4260 2.8270 8 6 5.5348 -0.9582 2.4205 9 7 5.8206 -2.1294 1.8923 10 14 6.7993 -0.0752 3.4744 11 1 6.6296 -0.4784 4.8935 12 1 8.1648 -0.4374 3.0168 13 1 6.6088 1.3924 3.3507 14 6 4.1054 -1.4266 -0.0307 15 6 3.5709 -0.6949 -1.2659 16 6 2.0409 -0.7230 -1.2484 17 1 1.6968 -1.7573 -1.2353 18 7 1.5268 -0.0527 -2.4453 19 6 1.3988 -0.7379 -3.5988 20 8 1.7087 -1.9095 -3.6458 21 6 0.8705 -0.0482 -4.8302 22 6 0.8268 -1.0277 -5.9747 23 6 1.9208 -1.1642 -6.8089 24 6 1.8848 -2.0653 -7.8563 25 6 0.7487 -2.8245 -8.0774 26 9 0.7107 -3.7014 -9.1043 27 6 -0.3504 -2.6836 -7.2439 28 9 -1.4601 -3.4239 -7.4575 29 6 -0.3092 -1.7843 -6.1927 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7216 1.2980 34 1 1.7637 -0.1601 2.1403 35 1 6.6881 -2.5338 2.0500 36 1 5.1897 -1.3245 0.0138 37 1 3.8376 -2.4817 -0.0867 38 1 3.9159 0.3390 -1.2540 39 1 3.9335 -1.1896 -2.1670 40 1 1.2786 0.8842 -2.4076 41 1 -0.1339 0.3269 -4.6339 42 1 1.5249 0.7840 -5.0895 43 1 2.8060 -0.5692 -6.6394 44 1 2.7415 -2.1740 -8.5049 45 1 -1.1647 -1.6736 -5.5428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942583045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:43 Heat of formation + Delta-G solvation = -89.666123 kcal Electronic energy + Delta-G solvation = -29008.458629 eV Core-core repulsion = 24661.999024 eV Total energy + Delta-G solvation = -4346.459605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.67296 -48.75036 -40.24388 -39.03361 -37.57154 -34.56251 -33.03398 -32.53872 -31.21895 -31.08324 -29.93914 -27.72892 -25.90342 -24.93628 -23.56367 -22.72071 -21.85042 -21.01363 -20.27017 -19.31773 -18.17889 -17.45718 -17.25486 -17.08278 -16.64440 -16.44210 -15.96244 -15.16238 -15.09880 -14.84876 -14.74667 -14.55699 -14.22246 -13.98546 -13.86871 -13.67512 -13.37217 -13.19707 -12.83674 -12.76494 -12.32532 -12.22723 -12.15919 -11.97733 -11.55058 -11.50911 -11.33324 -11.08703 -10.84166 -10.66248 -10.37819 -10.27221 -10.05452 -9.87911 -9.81110 -9.52314 -9.32530 -8.87095 -8.73378 -8.44772 -6.70382 -5.80812 -3.24044 0.61520 0.73207 2.70631 2.94357 3.35416 3.42872 3.44090 3.45093 3.53456 4.05123 4.18279 4.28833 4.46943 4.67691 4.77616 4.82856 4.98642 5.11922 5.13993 5.27893 5.37822 5.44060 5.46554 5.51989 5.58336 5.60630 5.71557 5.86806 5.93832 6.02967 6.06917 6.21801 6.24072 6.33857 6.40946 6.46089 6.57927 6.64017 6.74907 6.89683 6.93228 7.34499 7.62741 7.67465 7.77268 8.34163 8.42701 9.18579 9.81899 10.38504 11.27709 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.002300 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.788432 B =12169.869625 C =12866.495356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.071 0.929 4 C 0.154 3.846 5 N -0.592 5.592 6 C -0.255 4.255 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.157 3.843 17 H 0.081 0.919 18 N -0.722 5.722 19 C 0.509 3.491 20 O -0.531 6.531 21 C -0.106 4.106 22 C -0.042 4.042 23 C -0.085 4.085 24 C -0.123 4.123 25 C 0.063 3.937 26 F -0.131 7.131 27 C 0.069 3.931 28 F -0.130 7.130 29 C -0.112 4.112 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.020 0.980 34 H 0.058 0.942 35 H 0.254 0.746 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.395 0.605 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 6.723 -18.008 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.089 0.911 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.047 3.953 15 C -0.187 4.187 16 C 0.054 3.946 17 H 0.099 0.901 18 N -0.372 5.372 19 C 0.294 3.706 20 O -0.407 6.407 21 C -0.145 4.145 22 C -0.043 4.043 23 C -0.103 4.103 24 C -0.141 4.141 25 C 0.043 3.957 26 F -0.110 7.110 27 C 0.048 3.952 28 F -0.109 7.109 29 C -0.131 4.131 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.228 0.772 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.831 5.692 -18.040 22.311 hybrid contribution 0.390 0.483 0.321 0.699 sum -11.441 6.176 -17.719 21.977 Atomic orbital electron populations 1.21771 0.95825 1.01556 1.00799 1.21963 0.94465 1.00574 0.96511 0.91075 1.20896 0.86033 0.96625 0.93766 1.44098 0.99259 1.71480 1.16621 1.19148 0.98550 1.11993 1.08792 0.91686 1.25062 0.99983 0.95327 0.99199 1.70032 1.22201 1.14456 1.47779 0.86318 0.81128 0.79363 0.80066 1.21372 1.21554 1.20509 1.20754 0.99397 0.93099 0.82014 1.22567 0.93914 1.01460 1.00759 1.21062 0.94538 0.96859 0.82158 0.90053 1.46291 1.66104 1.14251 1.10575 1.20322 0.78634 0.87371 0.84267 1.90762 1.49279 1.16104 1.84551 1.20734 1.04442 0.97882 0.91490 1.19193 0.93048 0.96685 0.95353 1.20965 0.98181 0.97727 0.93434 1.21049 0.96884 0.96368 0.99839 1.17696 0.95382 0.93986 0.88604 1.91521 1.96817 1.66605 1.56017 1.17596 0.83554 0.95909 0.98094 1.91528 1.49985 1.74925 1.94425 1.20899 1.00126 0.95559 0.96480 0.92761 0.93478 0.92930 0.96251 0.92393 0.93556 0.89290 0.96188 0.92683 0.92845 0.77159 0.87593 0.87346 0.84191 0.83576 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.02 37.16 0.34 -1.40 16 2 C -0.11 -1.77 2.46 -90.50 -0.22 -1.99 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.15 3.07 5.80 -3.71 -0.02 3.05 16 5 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 6 C -0.26 -6.84 9.58 -15.06 -0.14 -6.99 16 7 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16 10 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 15 C -0.15 -2.78 5.65 -26.61 -0.15 -2.93 16 16 C 0.16 2.54 1.88 -67.89 -0.13 2.41 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 18 N -0.72 -8.63 4.37 -53.77 -0.23 -8.86 16 19 C 0.51 6.29 7.79 -10.98 -0.09 6.21 16 20 O -0.53 -9.15 15.70 5.56 0.09 -9.06 16 21 C -0.11 -0.80 5.83 -29.03 -0.17 -0.97 16 22 C -0.04 -0.39 4.37 -104.62 -0.46 -0.85 16 23 C -0.08 -0.74 9.70 -39.58 -0.38 -1.13 16 24 C -0.12 -1.11 10.02 -39.52 -0.40 -1.51 16 25 C 0.06 0.70 7.31 -39.36 -0.29 0.41 16 26 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 27 C 0.07 0.78 7.31 -39.37 -0.29 0.49 16 28 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 29 C -0.11 -1.11 9.68 -39.53 -0.38 -1.49 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.48 7.37 -51.93 -0.38 0.09 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.39 3.48 8.31 -40.82 -0.34 3.14 16 41 H 0.11 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.11 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -32.53 376.91 -8.66 -41.19 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.46 Total: 0.75 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.89 Total: -2.58 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.13 Total: -49.21 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.53 -8.66 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942583045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.477 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds