Wall clock time and date at job start Tue Mar 31 2020 20:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49893 * 2 1 4 4 C 1.53191 * 109.52033 * 120.07664 * 2 1 3 5 5 N 1.46924 * 108.77534 * 174.60335 * 4 2 1 6 6 C 1.36941 * 120.63455 * 126.41275 * 5 4 2 7 7 H 1.08001 * 120.00218 * 207.67350 * 6 5 4 8 8 C 1.38815 * 119.99617 * 27.67439 * 6 5 4 9 9 N 1.31620 * 119.99966 * 17.35875 * 8 6 5 10 10 Si 1.86796 * 119.99920 * 197.35415 * 8 6 5 11 11 H 1.48502 * 109.47075 * 60.00472 * 10 8 6 12 12 H 1.48498 * 109.47083 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47227 * 300.00387 * 10 8 6 14 14 C 1.46932 * 118.73948 * 306.39092 * 5 4 2 15 15 C 1.53193 * 108.76078 * 53.61516 * 14 5 4 16 16 C 1.53036 * 109.49732 * 239.93180 * 2 1 3 17 17 H 1.09002 * 109.46406 * 298.65724 * 16 2 1 18 18 N 1.46495 * 109.46293 * 58.63271 * 16 2 1 19 19 C 1.34780 * 120.00291 * 205.29918 * 18 16 2 20 20 O 1.21280 * 119.99596 * 359.72867 * 19 18 16 21 21 C 1.50694 * 120.00009 * 179.72545 * 19 18 16 22 22 C 1.50708 * 109.47010 * 180.02562 * 21 19 18 23 23 C 1.38198 * 120.00449 * 99.99863 * 22 21 19 24 24 C 1.38432 * 120.00123 * 179.97438 * 23 22 21 25 25 F 1.35098 * 119.99841 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.99843 * 359.97438 * 24 23 22 27 27 C 1.38159 * 120.00063 * 359.96044 * 26 24 23 28 28 C 1.38429 * 119.99486 * 279.72226 * 22 21 19 29 29 F 1.35106 * 119.99970 * 0.02562 * 28 22 21 30 30 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47310 * 300.07484 * 1 2 3 32 32 H 1.09001 * 109.46844 * 60.06756 * 1 2 3 33 33 H 1.09001 * 109.58651 * 294.39127 * 4 2 1 34 34 H 1.08999 * 109.58843 * 54.81842 * 4 2 1 35 35 H 0.97003 * 120.00008 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58811 * 173.39467 * 14 5 4 37 37 H 1.08998 * 109.58567 * 293.67986 * 14 5 4 38 38 H 1.09008 * 109.48476 * 185.39894 * 15 14 5 39 39 H 1.09001 * 109.50810 * 65.30701 * 15 14 5 40 40 H 0.97003 * 119.99780 * 25.02544 * 18 16 2 41 41 H 1.09001 * 109.47038 * 299.99776 * 21 19 18 42 42 H 1.08994 * 109.47689 * 60.00381 * 21 19 18 43 43 H 1.08008 * 119.99754 * 359.97438 * 23 22 21 44 44 H 1.08002 * 119.99708 * 179.97438 * 26 24 23 45 45 H 1.08003 * 119.99900 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7236 1.2495 5 7 3.5052 -0.8283 1.1691 6 6 4.2943 -0.3781 2.1938 7 1 5.2994 -0.0383 1.9923 8 6 3.8021 -0.3587 3.4917 9 7 2.7389 -1.0693 3.8031 10 14 4.6490 0.6759 4.7962 11 1 4.6318 2.1027 4.3846 12 1 3.9342 0.5246 6.0890 13 1 6.0544 0.2227 4.9522 14 6 4.1059 -1.4256 -0.0314 15 6 3.5708 -0.6938 -1.2663 16 6 2.0408 -0.7228 -1.2485 17 1 1.6974 -1.7572 -1.2353 18 7 1.5260 -0.0529 -2.4452 19 6 1.3922 -0.7397 -3.5972 20 8 1.7028 -1.9112 -3.6442 21 6 0.8568 -0.0522 -4.8266 22 6 0.8065 -1.0336 -5.9692 23 6 -0.3891 -1.6379 -6.3090 24 6 -0.4354 -2.5389 -7.3589 25 9 -1.6040 -3.1300 -7.6907 26 6 0.7161 -2.8343 -8.0690 27 6 1.9110 -2.2292 -7.7302 28 6 1.9567 -1.3254 -6.6821 29 9 3.1244 -0.7308 -6.3531 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.7643 -0.1579 2.1388 34 1 1.6063 -1.7216 1.2980 35 1 2.3952 -1.0559 4.7101 36 1 5.1902 -1.3230 0.0129 37 1 3.8407 -2.4814 -0.0860 38 1 3.9337 -1.1881 -2.1675 39 1 3.9153 0.3403 -1.2543 40 1 1.2776 0.8840 -2.4076 41 1 -0.1468 0.3224 -4.6253 42 1 1.5091 0.7801 -5.0906 43 1 -1.2873 -1.4071 -5.7554 44 1 0.6800 -3.5376 -8.8878 45 1 2.8090 -2.4593 -8.2843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942583575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:58 Heat of formation + Delta-G solvation = -89.600433 kcal Electronic energy + Delta-G solvation = -29359.082777 eV Core-core repulsion = 25012.626020 eV Total energy + Delta-G solvation = -4346.456757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.20165 -49.12451 -40.11309 -38.96782 -37.55983 -34.52390 -33.34185 -32.28346 -31.84750 -30.49744 -29.56583 -27.95613 -25.94292 -24.96891 -23.39216 -22.76877 -21.86921 -20.88100 -20.24253 -19.27013 -17.94539 -17.52354 -17.49502 -17.16388 -16.62686 -15.98973 -15.86600 -15.51735 -15.10267 -14.80163 -14.68720 -14.52438 -13.94534 -13.85764 -13.71512 -13.64728 -13.34760 -13.14615 -12.93800 -12.87098 -12.52786 -12.22182 -12.11335 -11.96624 -11.47814 -11.38444 -11.30361 -11.07666 -10.75726 -10.65199 -10.37277 -10.19520 -10.01664 -9.95787 -9.72349 -9.56362 -9.33157 -8.79304 -8.71318 -8.45963 -6.69766 -5.80450 -3.22230 0.63843 0.70100 2.72206 2.94651 3.37172 3.42892 3.43548 3.44596 3.82804 3.91247 4.12557 4.29941 4.48516 4.60538 4.78568 4.85135 4.97984 5.12125 5.22767 5.31144 5.39405 5.45057 5.57450 5.60019 5.65903 5.66709 5.73441 5.79819 5.87164 6.06941 6.12258 6.23378 6.34226 6.45104 6.46674 6.50300 6.58707 6.67491 6.79208 6.93508 6.99074 7.32112 7.58592 7.69659 7.78876 8.35345 8.43476 9.19723 9.82960 10.39918 11.28333 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.002382 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.157015 B =11752.102757 C =12265.767409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.903 3.097 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.139 4.139 16 C 0.157 3.843 17 H 0.081 0.919 18 N -0.720 5.720 19 C 0.512 3.488 20 O -0.534 6.534 21 C -0.107 4.107 22 C -0.068 4.068 23 C -0.115 4.115 24 C 0.089 3.911 25 F -0.136 7.136 26 C -0.126 4.126 27 C -0.124 4.124 28 C 0.109 3.891 29 F -0.130 7.130 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.020 0.980 35 H 0.255 0.745 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 2.861 -22.982 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.020 3.980 15 C -0.180 4.180 16 C 0.054 3.946 17 H 0.100 0.900 18 N -0.370 5.370 19 C 0.297 3.703 20 O -0.410 6.410 21 C -0.147 4.147 22 C -0.069 4.069 23 C -0.134 4.134 24 C 0.069 3.931 25 F -0.115 7.115 26 C -0.145 4.145 27 C -0.143 4.143 28 C 0.089 3.911 29 F -0.108 7.108 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.230 0.770 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.319 1.977 -22.809 24.036 hybrid contribution 0.272 0.948 0.729 1.226 sum -7.047 2.924 -22.080 23.361 Atomic orbital electron populations 1.21724 0.95921 1.01442 1.00567 1.22169 0.94668 1.00638 0.96851 0.91422 1.20803 0.83061 0.97062 0.93625 1.44100 1.01732 1.69389 1.16304 1.19154 0.97787 1.35475 0.85834 0.91672 1.25040 0.98570 0.99059 0.96968 1.70021 1.25670 1.40130 1.18905 0.86367 0.78969 0.80512 0.80914 1.21058 1.21638 1.20877 1.20876 0.96678 0.94279 0.86137 1.22381 0.94816 1.01309 0.99469 1.21068 0.93840 0.97156 0.82527 0.90049 1.46274 1.65885 1.14264 1.10580 1.20241 0.78498 0.87298 0.84234 1.90735 1.49649 1.16138 1.84501 1.20669 1.04696 0.97888 0.91411 1.19151 0.91953 0.99211 0.96590 1.20862 0.98653 0.96838 0.97021 1.17572 0.81953 0.96354 0.97202 1.91517 1.45839 1.82295 1.91837 1.20967 0.90886 1.01505 1.01153 1.20960 0.99176 0.96783 0.97399 1.17475 0.81437 0.95829 0.96336 1.91529 1.45610 1.81793 1.91907 0.93037 0.92599 0.93909 0.88976 0.96177 0.93546 0.92586 0.96214 0.92688 0.92315 0.77048 0.87234 0.87307 0.83751 0.83760 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.03 37.16 0.34 -1.73 16 2 C -0.12 -2.17 2.46 -90.50 -0.22 -2.39 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.18 4.18 4.59 -3.71 -0.02 4.16 16 5 N -0.59 -14.74 2.99 -172.31 -0.52 -15.26 16 6 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 10 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 15 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 16 C 0.16 2.68 1.88 -67.89 -0.13 2.55 16 17 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 18 N -0.72 -9.49 4.36 -53.77 -0.23 -9.72 16 19 C 0.51 6.99 7.78 -10.99 -0.09 6.90 16 20 O -0.53 -9.62 15.62 5.56 0.09 -9.53 16 21 C -0.11 -0.99 5.56 -29.03 -0.16 -1.15 16 22 C -0.07 -0.71 4.42 -104.56 -0.46 -1.17 16 23 C -0.11 -1.10 9.65 -39.52 -0.38 -1.48 16 24 C 0.09 0.85 7.30 -39.43 -0.29 0.57 16 25 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 26 C -0.13 -1.05 10.02 -39.53 -0.40 -1.45 16 27 C -0.12 -1.11 10.02 -39.52 -0.40 -1.51 16 28 C 0.11 1.20 7.14 -39.43 -0.28 0.92 16 29 F -0.13 -1.61 16.66 2.25 0.04 -1.57 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.52 7.36 -51.93 -0.38 0.14 16 33 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.40 4.06 8.31 -40.82 -0.34 3.72 16 41 H 0.11 0.69 8.00 -51.93 -0.42 0.27 16 42 H 0.11 0.83 7.94 -51.93 -0.41 0.42 16 43 H 0.14 1.11 8.04 -52.48 -0.42 0.69 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -32.20 376.00 -8.66 -40.87 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.44 Total: 2.10 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.89 Total: -2.37 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.13 Total: -50.25 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.20 -8.66 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942583575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.735 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds