Wall clock time and date at job start Tue Mar 31 2020 20:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49893 * 2 1 4 4 C 1.53191 * 109.52033 * 120.07664 * 2 1 3 5 5 N 1.46924 * 108.77534 * 174.60335 * 4 2 1 6 6 C 1.36941 * 120.63455 * 126.41275 * 5 4 2 7 7 H 1.08001 * 120.00218 * 207.67350 * 6 5 4 8 8 C 1.38815 * 119.99617 * 27.67439 * 6 5 4 9 9 N 1.31620 * 119.99966 * 17.35875 * 8 6 5 10 10 Si 1.86796 * 119.99920 * 197.35415 * 8 6 5 11 11 H 1.48502 * 109.47075 * 60.00472 * 10 8 6 12 12 H 1.48498 * 109.47083 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47227 * 300.00387 * 10 8 6 14 14 C 1.46932 * 118.73948 * 306.39092 * 5 4 2 15 15 C 1.53193 * 108.76078 * 53.61516 * 14 5 4 16 16 C 1.53036 * 109.49732 * 239.93180 * 2 1 3 17 17 H 1.09002 * 109.46406 * 298.65724 * 16 2 1 18 18 N 1.46495 * 109.46293 * 58.63271 * 16 2 1 19 19 C 1.34780 * 120.00291 * 205.29918 * 18 16 2 20 20 O 1.21280 * 119.99596 * 359.72867 * 19 18 16 21 21 C 1.50694 * 120.00009 * 179.72545 * 19 18 16 22 22 C 1.50708 * 109.47010 * 180.02562 * 21 19 18 23 23 C 1.38198 * 120.00449 * 99.99863 * 22 21 19 24 24 C 1.38432 * 120.00123 * 179.97438 * 23 22 21 25 25 F 1.35098 * 119.99841 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.99843 * 359.97438 * 24 23 22 27 27 C 1.38159 * 120.00063 * 359.96044 * 26 24 23 28 28 C 1.38429 * 119.99486 * 279.72226 * 22 21 19 29 29 F 1.35106 * 119.99970 * 0.02562 * 28 22 21 30 30 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47310 * 300.07484 * 1 2 3 32 32 H 1.09001 * 109.46844 * 60.06756 * 1 2 3 33 33 H 1.09001 * 109.58651 * 294.39127 * 4 2 1 34 34 H 1.08999 * 109.58843 * 54.81842 * 4 2 1 35 35 H 0.97003 * 120.00008 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58811 * 173.39467 * 14 5 4 37 37 H 1.08998 * 109.58567 * 293.67986 * 14 5 4 38 38 H 1.09008 * 109.48476 * 185.39894 * 15 14 5 39 39 H 1.09001 * 109.50810 * 65.30701 * 15 14 5 40 40 H 0.97003 * 119.99780 * 25.02544 * 18 16 2 41 41 H 1.09001 * 109.47038 * 299.99776 * 21 19 18 42 42 H 1.08994 * 109.47689 * 60.00381 * 21 19 18 43 43 H 1.08008 * 119.99754 * 359.97438 * 23 22 21 44 44 H 1.08002 * 119.99708 * 179.97438 * 26 24 23 45 45 H 1.08003 * 119.99900 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7236 1.2495 5 7 3.5052 -0.8283 1.1691 6 6 4.2943 -0.3781 2.1938 7 1 5.2994 -0.0383 1.9923 8 6 3.8021 -0.3587 3.4917 9 7 2.7389 -1.0693 3.8031 10 14 4.6490 0.6759 4.7962 11 1 4.6318 2.1027 4.3846 12 1 3.9342 0.5246 6.0890 13 1 6.0544 0.2227 4.9522 14 6 4.1059 -1.4256 -0.0314 15 6 3.5708 -0.6938 -1.2663 16 6 2.0408 -0.7228 -1.2485 17 1 1.6974 -1.7572 -1.2353 18 7 1.5260 -0.0529 -2.4452 19 6 1.3922 -0.7397 -3.5972 20 8 1.7028 -1.9112 -3.6442 21 6 0.8568 -0.0522 -4.8266 22 6 0.8065 -1.0336 -5.9692 23 6 -0.3891 -1.6379 -6.3090 24 6 -0.4354 -2.5389 -7.3589 25 9 -1.6040 -3.1300 -7.6907 26 6 0.7161 -2.8343 -8.0690 27 6 1.9110 -2.2292 -7.7302 28 6 1.9567 -1.3254 -6.6821 29 9 3.1244 -0.7308 -6.3531 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.7643 -0.1579 2.1388 34 1 1.6063 -1.7216 1.2980 35 1 2.3952 -1.0559 4.7101 36 1 5.1902 -1.3230 0.0129 37 1 3.8407 -2.4814 -0.0860 38 1 3.9337 -1.1881 -2.1675 39 1 3.9153 0.3403 -1.2543 40 1 1.2776 0.8840 -2.4076 41 1 -0.1468 0.3224 -4.6253 42 1 1.5091 0.7801 -5.0906 43 1 -1.2873 -1.4071 -5.7554 44 1 0.6800 -3.5376 -8.8878 45 1 2.8090 -2.4593 -8.2843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942583575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:57 Heat of formation + Delta-G solvation = -108.082149 kcal Electronic energy + Delta-G solvation = -29359.884204 eV Core-core repulsion = 25012.626020 eV Total energy + Delta-G solvation = -4347.258184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.95913 -49.93822 -41.21999 -39.90234 -38.96879 -36.13664 -34.24537 -33.76481 -33.48588 -31.39218 -31.04881 -28.88725 -27.55283 -26.67218 -24.30260 -23.93757 -22.98159 -22.50678 -21.42471 -20.78887 -18.92341 -18.64264 -18.26492 -18.22980 -17.96425 -17.20938 -16.77750 -16.71039 -16.33742 -16.11448 -15.59197 -15.48863 -15.40196 -15.29480 -15.01283 -14.67577 -14.60859 -14.37362 -14.28516 -13.95056 -13.70638 -13.52092 -13.19467 -12.94736 -12.91394 -12.84459 -12.77035 -12.55147 -12.45094 -12.05516 -12.04227 -11.84495 -11.73904 -11.55571 -11.26422 -10.92713 -10.55863 -10.12613 -9.96463 -9.54095 -8.72211 -7.88530 -5.34183 -0.09098 0.01762 1.48240 1.49717 1.57172 1.67923 2.10364 2.48759 2.51234 3.12010 3.20577 3.26485 3.42875 3.61584 3.63726 3.77117 3.94733 4.01242 4.06083 4.12632 4.21598 4.34018 4.37463 4.49399 4.56548 4.68132 4.73586 4.76892 4.85393 4.93818 4.94440 4.99356 4.99493 5.02463 5.08181 5.10916 5.17480 5.29788 5.35507 5.50280 5.58230 5.65016 5.73397 5.77318 6.37651 6.63448 7.13382 7.32391 7.82794 8.35794 9.18147 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.002382 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.157015 B =11752.102757 C =12265.767409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.075 0.925 4 C 0.188 3.812 5 N -0.610 5.610 6 C -0.266 4.266 7 H 0.067 0.933 8 C -0.049 4.049 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.275 1.275 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.171 3.829 17 H 0.053 0.947 18 N -0.707 5.707 19 C 0.511 3.489 20 O -0.581 6.581 21 C -0.097 4.097 22 C -0.081 4.081 23 C -0.118 4.118 24 C 0.075 3.925 25 F -0.141 7.141 26 C -0.122 4.122 27 C -0.126 4.126 28 C 0.084 3.916 29 F -0.143 7.143 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.063 0.937 34 H -0.011 1.011 35 H 0.251 0.749 36 H 0.056 0.944 37 H 0.004 0.996 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.415 0.585 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 4.704 -24.814 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.093 0.907 4 C 0.061 3.939 5 N -0.333 5.333 6 C -0.396 4.396 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.580 5.580 10 Si 0.797 3.203 11 H -0.200 1.200 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.065 3.935 17 H 0.072 0.928 18 N -0.359 5.359 19 C 0.298 3.702 20 O -0.461 6.461 21 C -0.137 4.137 22 C -0.083 4.083 23 C -0.137 4.137 24 C 0.056 3.944 25 F -0.120 7.120 26 C -0.140 4.140 27 C -0.145 4.145 28 C 0.064 3.936 29 F -0.121 7.121 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.007 0.993 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.252 0.748 41 H 0.165 0.835 42 H 0.147 0.853 43 H 0.180 0.820 44 H 0.187 0.813 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.960 3.860 -24.681 26.218 hybrid contribution 0.491 0.263 1.242 1.361 sum -7.468 4.124 -23.439 24.943 Atomic orbital electron populations 1.21679 0.93410 1.01428 1.02456 1.21890 0.96643 0.99900 0.94358 0.90664 1.20621 0.82380 0.95559 0.95306 1.44372 1.02363 1.69830 1.16723 1.19485 0.98209 1.35193 0.86726 0.91557 1.25810 0.99466 1.00217 0.98928 1.70187 1.27212 1.41612 1.19029 0.85321 0.77870 0.79151 0.77974 1.20046 1.21996 1.20374 1.20956 0.96797 0.93765 0.86691 1.22176 0.95783 1.01083 0.97438 1.20593 0.92874 0.96033 0.83952 0.92837 1.45980 1.65526 1.15061 1.09300 1.21010 0.77305 0.86763 0.85083 1.90724 1.51602 1.18494 1.85265 1.20713 1.06948 0.97546 0.88444 1.19325 0.92005 0.99897 0.97066 1.21087 0.99102 0.96469 0.97040 1.17812 0.82188 0.96706 0.97720 1.91506 1.46147 1.82414 1.91911 1.21261 0.90167 1.01271 1.01329 1.21234 1.00208 0.96060 0.96973 1.17861 0.81349 0.96840 0.97528 1.91490 1.46343 1.82156 1.92160 0.94036 0.92592 0.90101 0.91876 0.99279 0.93985 0.92573 0.97843 0.92483 0.91419 0.74753 0.83480 0.85268 0.82035 0.81307 0.81668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.03 71.98 0.65 -3.06 16 2 C -0.11 -3.72 2.46 -10.72 -0.03 -3.75 16 3 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.19 8.94 4.59 86.36 0.40 9.34 16 5 N -0.61 -31.07 2.99 -699.08 -2.09 -33.17 16 6 C -0.27 -14.70 9.59 84.03 0.81 -13.89 16 7 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 8 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 9 N -0.93 -55.19 11.19 21.65 0.24 -54.95 16 10 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.14 6.38 6.52 86.36 0.56 6.94 16 15 C -0.12 -4.51 5.65 30.67 0.17 -4.33 16 16 C 0.17 5.68 1.88 45.02 0.08 5.76 16 17 H 0.05 2.12 7.57 -2.39 -0.02 2.11 16 18 N -0.71 -16.86 4.36 -442.42 -1.93 -18.79 16 19 C 0.51 12.86 7.78 87.65 0.68 13.54 16 20 O -0.58 -20.59 15.62 -3.03 -0.05 -20.64 16 21 C -0.10 -1.49 5.56 29.10 0.16 -1.33 16 22 C -0.08 -1.54 4.42 -19.83 -0.09 -1.62 16 23 C -0.12 -2.02 9.65 22.31 0.22 -1.80 16 24 C 0.08 1.32 7.30 22.37 0.16 1.48 16 25 F -0.14 -2.64 17.27 44.97 0.78 -1.87 16 26 C -0.12 -1.80 10.02 22.31 0.22 -1.58 16 27 C -0.13 -2.05 10.02 22.31 0.22 -1.83 16 28 C 0.08 1.73 7.14 22.37 0.16 1.89 16 29 F -0.14 -3.39 16.66 44.97 0.75 -2.64 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.67 7.36 -2.39 -0.02 1.65 16 33 H 0.06 3.37 6.04 -2.39 -0.01 3.35 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.42 6.87 8.31 -92.71 -0.77 6.10 16 41 H 0.15 1.14 8.00 -2.39 -0.02 1.12 16 42 H 0.13 1.50 7.94 -2.39 -0.02 1.48 16 43 H 0.16 2.05 8.04 -2.91 -0.02 2.03 16 44 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 45 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -72.83 376.00 4.77 -68.06 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.24 Total: 13.99 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 4.80 Total: 3.47 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.78 Total: -106.90 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 1.53 Total: -4.50 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.83 4.77 -68.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942583575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.023 kcal (2) G-P(sol) polarization free energy of solvation -72.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds