Wall clock time and date at job start Tue Mar 31 2020 20:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.52524 * 2 1 4 4 C 1.53189 * 109.50225 * 239.91826 * 2 1 3 5 5 N 1.46919 * 108.77840 * 185.41640 * 4 2 1 6 6 C 1.36943 * 120.62943 * 233.59023 * 5 4 2 7 7 H 1.07995 * 120.00062 * 152.61123 * 6 5 4 8 8 C 1.38808 * 119.99639 * 332.60703 * 6 5 4 9 9 N 1.31622 * 119.99595 * 159.31858 * 8 6 5 10 10 Si 1.86797 * 120.00290 * 339.31473 * 8 6 5 11 11 H 1.48502 * 109.47173 * 92.97034 * 10 8 6 12 12 H 1.48503 * 109.47473 * 212.96950 * 10 8 6 13 13 H 1.48501 * 109.47156 * 332.96727 * 10 8 6 14 14 C 1.46922 * 118.74233 * 53.60505 * 5 4 2 15 15 C 1.53170 * 108.76874 * 306.39560 * 14 5 4 16 16 C 1.53040 * 109.49416 * 120.07866 * 2 1 3 17 17 H 1.08999 * 109.46509 * 301.32446 * 16 2 1 18 18 N 1.46496 * 109.46359 * 61.30153 * 16 2 1 19 19 C 1.34773 * 120.00264 * 205.02894 * 18 16 2 20 20 O 1.21283 * 120.00195 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00068 * 179.97438 * 19 18 16 22 22 C 1.50698 * 109.47160 * 179.97438 * 21 19 18 23 23 C 1.38254 * 119.99862 * 264.72348 * 22 21 19 24 24 C 1.38220 * 120.06913 * 179.77026 * 23 22 21 25 25 C 1.38251 * 120.07005 * 0.50615 * 24 23 22 26 26 C 1.38369 * 120.00184 * 359.74162 * 25 24 23 27 27 F 1.35104 * 120.03619 * 179.97438 * 26 25 24 28 28 C 1.38372 * 120.00196 * 84.99808 * 22 21 19 29 29 F 1.35105 * 120.03433 * 359.97438 * 28 22 21 30 30 H 1.09001 * 109.47461 * 299.91773 * 1 2 3 31 31 H 1.09000 * 109.46743 * 59.92153 * 1 2 3 32 32 H 1.09005 * 109.47169 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58509 * 305.20384 * 4 2 1 34 34 H 1.08997 * 109.58381 * 65.48293 * 4 2 1 35 35 H 0.97004 * 119.99583 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.58512 * 66.18310 * 14 5 4 37 37 H 1.08999 * 109.58881 * 186.46391 * 14 5 4 38 38 H 1.08997 * 109.49737 * 294.67902 * 15 14 5 39 39 H 1.09000 * 109.48038 * 174.58986 * 15 14 5 40 40 H 0.96998 * 119.99710 * 24.74564 * 18 16 2 41 41 H 1.09006 * 109.46718 * 299.99454 * 21 19 18 42 42 H 1.08997 * 109.47117 * 59.99354 * 21 19 18 43 43 H 1.07998 * 119.96516 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.96632 * 180.25346 * 24 23 22 45 45 H 1.08004 * 120.00222 * 179.72756 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1694 6 6 4.2937 -0.3792 -2.1943 7 1 5.3005 -0.0442 -1.9936 8 6 3.7993 -0.3539 -3.4911 9 7 4.3573 0.4255 -4.3930 10 14 2.3421 -1.4261 -3.9563 11 1 1.0857 -0.6513 -3.7944 12 1 2.4776 -1.8595 -5.3702 13 1 2.3045 -2.6202 -3.0742 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6950 1.2658 16 6 2.0407 -0.7230 1.2484 17 1 1.6583 -0.2243 2.1390 18 7 1.5783 -2.1130 1.2309 19 6 1.4496 -2.7950 2.3862 20 8 1.7170 -2.2582 3.4404 21 6 0.9734 -4.2247 2.3682 22 6 0.9178 -4.7535 3.7783 23 6 1.9847 -5.4676 4.2913 24 6 1.9371 -5.9491 5.5861 25 6 0.8184 -5.7267 6.3672 26 6 -0.2532 -5.0168 5.8550 27 9 -1.3470 -4.7994 6.6176 28 6 -0.2034 -4.5291 4.5576 29 9 -1.2484 -3.8357 4.0552 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -1.7216 -1.2980 34 1 1.7617 -0.1592 -2.1389 35 1 4.0121 0.4429 -5.2994 36 1 3.8376 -2.4818 0.0869 37 1 5.1897 -1.3268 -0.0148 38 1 3.9158 0.3389 1.2539 39 1 3.9335 -1.1897 2.1668 40 1 1.3609 -2.5412 0.3881 41 1 -0.0205 -4.2710 1.9229 42 1 1.6634 -4.8301 1.7804 43 1 2.8578 -5.6458 3.6812 44 1 2.7732 -6.5032 5.9866 45 1 0.7806 -6.1073 7.3773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943174383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:14 Heat of formation + Delta-G solvation = -80.538960 kcal Electronic energy + Delta-G solvation = -29993.087044 eV Core-core repulsion = 25647.023222 eV Total energy + Delta-G solvation = -4346.063822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.66739 -48.74788 -40.29860 -39.18584 -37.81250 -34.41237 -33.23470 -32.41174 -31.92890 -30.58957 -30.35476 -28.06147 -26.20012 -25.24150 -23.13558 -23.06297 -22.36751 -21.00607 -20.62151 -18.94339 -18.15408 -17.57622 -17.40087 -17.14910 -16.85746 -16.38889 -15.68116 -15.23098 -15.21660 -15.11882 -15.02660 -14.63362 -14.31178 -14.01432 -13.88379 -13.67422 -13.44251 -13.38752 -13.16727 -12.78803 -12.48326 -12.31856 -12.25078 -12.08438 -11.89453 -11.55868 -11.55668 -11.37607 -11.21512 -10.73003 -10.55582 -10.29118 -10.10743 -9.86780 -9.74267 -9.52285 -9.17772 -8.99836 -8.80668 -8.66282 -7.03499 -6.00508 -3.36623 0.64985 0.66765 2.68898 2.95707 3.24590 3.39663 3.40998 3.43211 3.51750 4.05215 4.15230 4.37343 4.45912 4.60698 4.75363 4.79928 4.87638 4.99010 5.04997 5.14047 5.26173 5.30477 5.42152 5.44091 5.51263 5.64593 5.65234 5.78103 5.83384 5.87950 5.93165 5.94262 6.00893 6.13771 6.25195 6.35872 6.37134 6.45007 6.56744 6.60438 6.64102 6.70925 6.89873 7.62834 7.90265 8.27810 8.30369 8.88000 9.65915 10.03088 11.15529 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.002854 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.778723 B = 9808.164533 C =10067.880418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 H 0.088 0.912 4 C 0.133 3.867 5 N -0.605 5.605 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.907 5.907 10 Si 0.882 3.118 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.272 1.272 14 C 0.152 3.848 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.079 0.921 18 N -0.714 5.714 19 C 0.516 3.484 20 O -0.538 6.538 21 C -0.109 4.109 22 C -0.066 4.066 23 C -0.088 4.088 24 C -0.099 4.099 25 C -0.129 4.129 26 C 0.066 3.934 27 F -0.131 7.131 28 C 0.082 3.918 29 F -0.126 7.126 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.263 0.737 36 H 0.020 0.980 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.401 0.599 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -13.202 17.824 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 H 0.107 0.893 4 C 0.007 3.993 5 N -0.328 5.328 6 C -0.388 4.388 7 H 0.103 0.897 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.713 3.287 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.197 1.197 14 C 0.026 3.974 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.097 0.903 18 N -0.365 5.365 19 C 0.302 3.698 20 O -0.416 6.416 21 C -0.149 4.149 22 C -0.068 4.068 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.148 4.148 26 C 0.046 3.954 27 F -0.109 7.109 28 C 0.062 3.938 29 F -0.104 7.104 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.951 -12.705 18.390 23.724 hybrid contribution -1.367 -0.532 -0.807 1.675 sum -9.318 -13.237 17.582 23.899 Atomic orbital electron populations 1.21788 0.95545 1.01406 1.01513 1.21965 0.94900 1.01162 0.95948 0.89322 1.21350 0.85080 0.96657 0.96246 1.44360 1.00491 1.70185 1.17765 1.18925 0.98549 1.36240 0.85113 0.89670 1.25291 0.97967 0.98657 0.95681 1.69842 1.43223 1.37748 1.04160 0.86959 0.82652 0.82297 0.76815 1.21586 1.23154 1.19693 1.20869 0.97164 0.93896 0.85478 1.22369 0.94789 1.02165 0.99290 1.20907 0.94491 0.80607 0.98398 0.90327 1.46140 1.67257 1.14465 1.08687 1.20209 0.77875 0.87565 0.84196 1.90709 1.50243 1.70023 1.30588 1.20671 1.05123 0.94969 0.94100 1.19260 0.92852 0.98966 0.95710 1.21032 0.97361 0.96373 0.95863 1.21043 0.97625 0.99490 0.93558 1.21079 0.92479 0.99631 1.01574 1.17639 0.86175 1.03052 0.88579 1.91526 1.51551 1.93246 1.74595 1.17473 0.86744 0.97831 0.91773 1.91523 1.55173 1.76636 1.87112 0.92941 0.92479 0.93121 0.96246 0.90599 0.92737 0.96159 0.91948 0.90965 0.92131 0.76363 0.87465 0.86793 0.84150 0.84112 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.05 37.16 0.34 -1.69 16 2 C -0.12 -1.96 2.67 -90.50 -0.24 -2.20 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.13 2.64 3.19 -3.72 -0.01 2.63 16 5 N -0.60 -13.45 2.77 -172.35 -0.48 -13.93 16 6 C -0.26 -6.99 10.03 -15.06 -0.15 -7.14 16 7 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 8 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 9 N -0.91 -27.16 13.97 55.49 0.78 -26.39 16 10 Si 0.88 21.34 24.35 -169.99 -4.14 17.20 16 11 H -0.29 -6.71 6.62 56.52 0.37 -6.34 16 12 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 13 H -0.27 -6.29 6.64 56.52 0.38 -5.92 16 14 C 0.15 2.84 6.26 -3.72 -0.02 2.82 16 15 C -0.15 -2.41 5.77 -26.62 -0.15 -2.56 16 16 C 0.16 2.48 2.21 -67.89 -0.15 2.33 16 17 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 18 N -0.71 -9.83 3.60 -53.77 -0.19 -10.03 16 19 C 0.52 7.05 7.79 -10.99 -0.09 6.96 16 20 O -0.54 -9.20 15.70 5.55 0.09 -9.12 16 21 C -0.11 -1.09 5.60 -29.03 -0.16 -1.25 16 22 C -0.07 -0.71 4.38 -104.57 -0.46 -1.17 16 23 C -0.09 -0.75 9.68 -39.58 -0.38 -1.13 16 24 C -0.10 -0.72 10.04 -39.58 -0.40 -1.12 16 25 C -0.13 -1.07 10.02 -39.53 -0.40 -1.46 16 26 C 0.07 0.73 7.31 -39.37 -0.29 0.45 16 27 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 28 C 0.08 1.00 7.25 -39.36 -0.29 0.72 16 29 F -0.13 -1.72 16.48 2.25 0.04 -1.68 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.66 7.53 -51.93 -0.39 0.27 16 33 H 0.02 0.37 5.57 -51.93 -0.29 0.08 16 34 H 0.08 1.70 4.50 -51.93 -0.23 1.47 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 37 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 5.19 6.72 -40.82 -0.27 4.92 16 41 H 0.11 0.94 7.79 -51.93 -0.40 0.54 16 42 H 0.11 0.85 8.05 -51.93 -0.42 0.43 16 43 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -32.45 365.56 -7.52 -39.96 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.21 Total: 3.27 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.94 Total: -3.27 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.10 Total: -50.34 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.45 -7.52 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943174383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.575 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds