Wall clock time and date at job start Tue Mar 31 2020 20:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.52524 * 2 1 4 4 C 1.53189 * 109.50225 * 239.91826 * 2 1 3 5 5 N 1.46919 * 108.77840 * 185.41640 * 4 2 1 6 6 C 1.36943 * 120.62943 * 233.59023 * 5 4 2 7 7 H 1.07995 * 120.00062 * 152.61123 * 6 5 4 8 8 C 1.38808 * 119.99639 * 332.60703 * 6 5 4 9 9 N 1.31622 * 119.99595 * 159.31858 * 8 6 5 10 10 Si 1.86797 * 120.00290 * 339.31473 * 8 6 5 11 11 H 1.48502 * 109.47173 * 92.97034 * 10 8 6 12 12 H 1.48503 * 109.47473 * 212.96950 * 10 8 6 13 13 H 1.48501 * 109.47156 * 332.96727 * 10 8 6 14 14 C 1.46922 * 118.74233 * 53.60505 * 5 4 2 15 15 C 1.53170 * 108.76874 * 306.39560 * 14 5 4 16 16 C 1.53040 * 109.49416 * 120.07866 * 2 1 3 17 17 H 1.08999 * 109.46509 * 301.32446 * 16 2 1 18 18 N 1.46496 * 109.46359 * 61.30153 * 16 2 1 19 19 C 1.34773 * 120.00264 * 205.02894 * 18 16 2 20 20 O 1.21283 * 120.00195 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00068 * 179.97438 * 19 18 16 22 22 C 1.50698 * 109.47160 * 179.97438 * 21 19 18 23 23 C 1.38254 * 119.99862 * 264.72348 * 22 21 19 24 24 C 1.38220 * 120.06913 * 179.77026 * 23 22 21 25 25 C 1.38251 * 120.07005 * 0.50615 * 24 23 22 26 26 C 1.38369 * 120.00184 * 359.74162 * 25 24 23 27 27 F 1.35104 * 120.03619 * 179.97438 * 26 25 24 28 28 C 1.38372 * 120.00196 * 84.99808 * 22 21 19 29 29 F 1.35105 * 120.03433 * 359.97438 * 28 22 21 30 30 H 1.09001 * 109.47461 * 299.91773 * 1 2 3 31 31 H 1.09000 * 109.46743 * 59.92153 * 1 2 3 32 32 H 1.09005 * 109.47169 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58509 * 305.20384 * 4 2 1 34 34 H 1.08997 * 109.58381 * 65.48293 * 4 2 1 35 35 H 0.97004 * 119.99583 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.58512 * 66.18310 * 14 5 4 37 37 H 1.08999 * 109.58881 * 186.46391 * 14 5 4 38 38 H 1.08997 * 109.49737 * 294.67902 * 15 14 5 39 39 H 1.09000 * 109.48038 * 174.58986 * 15 14 5 40 40 H 0.96998 * 119.99710 * 24.74564 * 18 16 2 41 41 H 1.09006 * 109.46718 * 299.99454 * 21 19 18 42 42 H 1.08997 * 109.47117 * 59.99354 * 21 19 18 43 43 H 1.07998 * 119.96516 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.96632 * 180.25346 * 24 23 22 45 45 H 1.08004 * 120.00222 * 179.72756 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1694 6 6 4.2937 -0.3792 -2.1943 7 1 5.3005 -0.0442 -1.9936 8 6 3.7993 -0.3539 -3.4911 9 7 4.3573 0.4255 -4.3930 10 14 2.3421 -1.4261 -3.9563 11 1 1.0857 -0.6513 -3.7944 12 1 2.4776 -1.8595 -5.3702 13 1 2.3045 -2.6202 -3.0742 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6950 1.2658 16 6 2.0407 -0.7230 1.2484 17 1 1.6583 -0.2243 2.1390 18 7 1.5783 -2.1130 1.2309 19 6 1.4496 -2.7950 2.3862 20 8 1.7170 -2.2582 3.4404 21 6 0.9734 -4.2247 2.3682 22 6 0.9178 -4.7535 3.7783 23 6 1.9847 -5.4676 4.2913 24 6 1.9371 -5.9491 5.5861 25 6 0.8184 -5.7267 6.3672 26 6 -0.2532 -5.0168 5.8550 27 9 -1.3470 -4.7994 6.6176 28 6 -0.2034 -4.5291 4.5576 29 9 -1.2484 -3.8357 4.0552 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -1.7216 -1.2980 34 1 1.7617 -0.1592 -2.1389 35 1 4.0121 0.4429 -5.2994 36 1 3.8376 -2.4818 0.0869 37 1 5.1897 -1.3268 -0.0148 38 1 3.9158 0.3389 1.2539 39 1 3.9335 -1.1897 2.1668 40 1 1.3609 -2.5412 0.3881 41 1 -0.0205 -4.2710 1.9229 42 1 1.6634 -4.8301 1.7804 43 1 2.8578 -5.6458 3.6812 44 1 2.7732 -6.5032 5.9866 45 1 0.7806 -6.1073 7.3773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943174383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:13 Heat of formation + Delta-G solvation = -100.222321 kcal Electronic energy + Delta-G solvation = -29993.940578 eV Core-core repulsion = 25647.023222 eV Total energy + Delta-G solvation = -4346.917356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.51930 -49.61278 -41.41468 -40.07215 -39.03545 -36.00040 -34.14168 -33.68919 -33.62656 -31.88965 -31.26917 -28.91105 -27.60439 -26.91842 -24.38165 -23.82309 -23.47298 -22.51199 -21.68206 -20.33998 -19.01389 -18.79627 -18.36422 -18.29406 -17.90607 -17.33130 -17.14232 -16.65589 -16.26529 -16.03445 -15.92227 -15.73637 -15.49723 -15.33344 -15.14443 -14.94084 -14.80869 -14.44347 -14.35531 -14.00570 -13.86800 -13.55570 -13.19524 -13.05291 -13.00315 -13.00131 -12.68137 -12.60853 -12.30545 -12.22121 -12.07998 -11.94829 -11.61012 -11.52456 -11.28402 -10.95924 -10.63439 -10.01326 -9.89488 -9.72860 -8.90777 -8.14066 -5.46651 -0.04282 -0.02487 1.33043 1.44020 1.53453 1.66596 2.13751 2.44462 2.53112 2.80464 3.06017 3.28098 3.35021 3.46131 3.67706 3.76505 3.89771 3.96021 3.99659 4.02559 4.19476 4.27954 4.32784 4.40209 4.50999 4.54890 4.63169 4.64885 4.79837 4.85038 4.88682 4.88901 5.00379 5.02887 5.04068 5.13118 5.17724 5.20891 5.29684 5.29868 5.37451 5.59708 5.78547 5.88770 6.14849 6.57188 6.93201 7.26171 7.63951 8.03364 9.05852 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.002854 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.778723 B = 9808.164533 C =10067.880418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.073 0.927 4 C 0.130 3.870 5 N -0.616 5.616 6 C -0.249 4.249 7 H 0.047 0.953 8 C -0.038 4.038 9 N -0.960 5.960 10 Si 0.948 3.052 11 H -0.273 1.273 12 H -0.316 1.316 13 H -0.248 1.248 14 C 0.152 3.848 15 C -0.136 4.136 16 C 0.169 3.831 17 H 0.076 0.924 18 N -0.710 5.710 19 C 0.517 3.483 20 O -0.575 6.575 21 C -0.103 4.103 22 C -0.080 4.080 23 C -0.089 4.089 24 C -0.089 4.089 25 C -0.124 4.124 26 C 0.039 3.961 27 F -0.144 7.144 28 C 0.050 3.950 29 F -0.144 7.144 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.261 0.739 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.408 0.592 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.166 0.834 44 H 0.178 0.822 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 -15.963 19.324 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.005 3.995 5 N -0.341 5.341 6 C -0.378 4.378 7 H 0.065 0.935 8 C -0.233 4.233 9 N -0.606 5.606 10 Si 0.776 3.224 11 H -0.200 1.200 12 H -0.245 1.245 13 H -0.172 1.172 14 C 0.028 3.972 15 C -0.176 4.176 16 C 0.064 3.936 17 H 0.094 0.906 18 N -0.362 5.362 19 C 0.305 3.695 20 O -0.454 6.454 21 C -0.143 4.143 22 C -0.082 4.082 23 C -0.107 4.107 24 C -0.107 4.107 25 C -0.142 4.142 26 C 0.019 3.981 27 F -0.123 7.123 28 C 0.030 3.970 29 F -0.123 7.123 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.183 0.817 44 H 0.195 0.805 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.883 -15.497 19.932 26.765 hybrid contribution -0.961 0.349 -1.150 1.539 sum -9.844 -15.148 18.782 26.060 Atomic orbital electron populations 1.21749 0.93256 1.02596 1.02145 1.21811 0.96714 0.99928 0.94651 0.90900 1.21421 0.83586 0.97725 0.96803 1.44431 1.01368 1.70720 1.17534 1.18827 0.97642 1.34840 0.86538 0.93520 1.25966 1.01690 0.99985 0.95630 1.69993 1.46058 1.40000 1.04547 0.85896 0.79629 0.81018 0.75858 1.20000 1.24546 1.17151 1.20964 0.96502 0.95003 0.84780 1.22235 0.95674 1.01254 0.98392 1.20670 0.93505 0.81833 0.97618 0.90562 1.46055 1.67186 1.13626 1.09306 1.20806 0.76732 0.88731 0.83250 1.90699 1.51793 1.71114 1.31826 1.20724 1.06441 0.92567 0.94537 1.19460 0.92986 0.99740 0.96001 1.21450 0.97274 0.95261 0.96670 1.21518 0.97971 0.98328 0.92875 1.21462 0.91679 0.98300 1.02796 1.18038 0.86862 1.04562 0.88624 1.91481 1.52424 1.93553 1.74859 1.17876 0.87252 0.99099 0.92736 1.91461 1.56105 1.77299 1.87411 0.91790 0.92457 0.91638 0.94017 0.93122 0.93059 0.94013 0.93196 0.92128 0.91218 0.75536 0.86298 0.83589 0.81688 0.80455 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.05 71.98 0.65 -2.88 16 2 C -0.11 -3.43 2.67 -10.72 -0.03 -3.46 16 3 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.13 4.89 3.19 86.36 0.28 5.17 16 5 N -0.62 -26.90 2.77 -699.18 -1.94 -28.84 16 6 C -0.25 -13.63 10.03 84.03 0.84 -12.79 16 7 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 8 C -0.04 -2.17 5.23 84.86 0.44 -1.72 16 9 N -0.96 -59.42 13.97 21.65 0.30 -59.12 16 10 Si 0.95 43.76 24.35 68.60 1.67 45.43 16 11 H -0.27 -11.87 6.62 99.48 0.66 -11.21 16 12 H -0.32 -15.19 7.11 99.48 0.71 -14.48 16 13 H -0.25 -10.34 6.64 99.48 0.66 -9.68 16 14 C 0.15 5.48 6.26 86.36 0.54 6.02 16 15 C -0.14 -4.28 5.77 30.67 0.18 -4.10 16 16 C 0.17 4.88 2.21 45.02 0.10 4.98 16 17 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 18 N -0.71 -17.31 3.60 -442.41 -1.59 -18.90 16 19 C 0.52 12.66 7.79 87.66 0.68 13.35 16 20 O -0.57 -18.55 15.70 -3.04 -0.05 -18.60 16 21 C -0.10 -1.72 5.60 29.10 0.16 -1.56 16 22 C -0.08 -1.52 4.38 -19.83 -0.09 -1.60 16 23 C -0.09 -1.18 9.68 22.27 0.22 -0.97 16 24 C -0.09 -0.94 10.04 22.27 0.22 -0.72 16 25 C -0.12 -1.73 10.02 22.30 0.22 -1.50 16 26 C 0.04 0.84 7.31 22.41 0.16 1.00 16 27 F -0.14 -3.51 17.18 44.97 0.77 -2.73 16 28 C 0.05 1.18 7.25 22.41 0.16 1.35 16 29 F -0.14 -3.92 16.48 44.97 0.74 -3.18 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.47 7.53 -2.38 -0.02 1.45 16 33 H 0.04 1.41 5.57 -2.39 -0.01 1.40 16 34 H 0.05 2.19 4.50 -2.39 -0.01 2.18 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.04 1.35 7.74 -2.39 -0.02 1.33 16 37 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.41 8.89 6.72 -92.71 -0.62 8.27 16 41 H 0.12 1.72 7.79 -2.38 -0.02 1.70 16 42 H 0.15 1.46 8.05 -2.39 -0.02 1.44 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -73.66 365.56 4.97 -68.69 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.31 Total: 16.69 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 4.75 Total: 0.56 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.23 Total: -106.86 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 1.51 Total: -5.91 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.67 Total: 45.43 kcal Total: -73.66 4.97 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943174383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.530 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds