Wall clock time and date at job start Tue Mar 31 2020 20:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 C 1.50702 * 109.46554 * 119.99521 * 2 1 3 5 5 N 1.31247 * 124.05719 * 300.17078 * 4 2 1 6 6 N 1.27337 * 120.03707 * 180.34069 * 5 4 2 7 7 S 1.56637 * 109.74205 * 359.71641 * 6 5 4 8 8 C 1.38243 * 124.05517 * 120.00517 * 4 2 1 9 9 C 1.47177 * 128.47775 * 359.97438 * 8 4 2 10 10 O 1.21619 * 119.99320 * 359.70689 * 9 8 4 11 11 N 1.34774 * 119.99937 * 179.70409 * 9 8 4 12 12 C 1.46506 * 119.99323 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46158 * 35.02695 * 12 11 9 14 14 C 1.53045 * 109.44606 * 275.05719 * 12 11 9 15 15 C 1.53195 * 109.31060 * 178.62290 * 14 12 11 16 16 N 1.46926 * 108.77331 * 54.63820 * 15 14 12 17 17 C 1.36941 * 120.63170 * 126.41214 * 16 15 14 18 18 H 1.08001 * 119.99840 * 207.67501 * 17 16 15 19 19 C 1.38808 * 119.99743 * 27.67008 * 17 16 15 20 20 N 1.31615 * 119.99919 * 17.36296 * 19 17 16 21 21 Si 1.86803 * 119.99890 * 197.35495 * 19 17 16 22 22 H 1.48497 * 109.46802 * 90.00462 * 21 19 17 23 23 H 1.48504 * 109.47224 * 210.00444 * 21 19 17 24 24 H 1.48498 * 109.47058 * 330.00637 * 21 19 17 25 25 C 1.46922 * 118.73983 * 306.38958 * 16 15 14 26 26 C 1.53037 * 109.45543 * 155.00223 * 12 11 9 27 27 H 1.08998 * 109.50140 * 61.42062 * 26 12 11 28 28 C 1.52998 * 109.52348 * 301.33184 * 26 12 11 29 29 H 1.08995 * 109.47635 * 300.00409 * 1 2 3 30 30 H 1.09000 * 109.46761 * 60.00504 * 1 2 3 31 31 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47303 * 239.99163 * 2 1 3 33 33 H 1.08991 * 109.47289 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46807 * 299.99468 * 3 2 1 35 35 H 1.08995 * 109.47115 * 59.99273 * 3 2 1 36 36 H 0.96990 * 120.00266 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.49887 * 58.67507 * 14 12 11 38 38 H 1.08999 * 109.49702 * 298.57563 * 14 12 11 39 39 H 1.08996 * 109.58710 * 294.85089 * 15 14 12 40 40 H 1.08998 * 109.58155 * 174.42173 * 15 14 12 41 41 H 0.97007 * 119.99487 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.58997 * 173.39547 * 25 16 15 43 43 H 1.08999 * 109.59068 * 293.82144 * 25 16 15 44 44 H 1.09002 * 109.47605 * 300.15119 * 28 26 12 45 45 H 1.09000 * 109.47125 * 60.15396 * 28 26 12 46 46 H 1.09005 * 109.47619 * 180.14775 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 7 1.7619 -0.3337 2.4584 6 7 2.2328 -0.9880 3.4441 7 16 3.0886 -2.1908 2.9204 8 6 2.8302 -1.8388 1.2016 9 6 3.3445 -2.5669 0.0304 10 8 3.0684 -2.1865 -1.0913 11 7 4.1213 -3.6549 0.2011 12 6 4.6337 -4.3792 -0.9648 13 1 4.8506 -3.6718 -1.7652 14 6 3.5826 -5.3836 -1.4429 15 6 4.1077 -6.1148 -2.6825 16 7 5.4114 -6.7119 -2.3625 17 6 5.6393 -8.0454 -2.5754 18 1 6.3627 -8.5727 -1.9713 19 6 4.9403 -8.7191 -3.5675 20 7 4.3274 -8.0428 -4.5157 21 14 4.8698 -10.5858 -3.5569 22 1 3.6920 -11.0321 -2.7703 23 1 4.7522 -11.0847 -4.9506 24 1 6.1091 -11.1244 -2.9412 25 6 6.4662 -5.8511 -1.8102 26 6 5.9148 -5.1228 -0.5804 27 1 5.6935 -5.8479 0.2029 28 6 6.9538 -4.1219 -0.0711 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 3.1299 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 4.3412 -3.9583 1.0957 37 1 2.6627 -4.8558 -1.6943 38 1 3.3834 -6.1061 -0.6515 39 1 4.2216 -5.4069 -3.5034 40 1 3.4068 -6.8992 -2.9682 41 1 3.8392 -8.5137 -5.2092 42 1 7.3215 -6.4614 -1.5204 43 1 6.7726 -5.1217 -2.5599 44 1 7.1739 -3.3964 -0.8543 45 1 6.5611 -3.6040 0.8039 46 1 7.8668 -4.6521 0.2000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943745810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:49 Heat of formation + Delta-G solvation = 22.615518 kcal Electronic energy + Delta-G solvation = -27670.476496 eV Core-core repulsion = 23915.018926 eV Total energy + Delta-G solvation = -3755.457570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.22402 -41.05988 -39.19721 -36.66516 -36.17799 -34.33561 -32.93154 -32.52111 -31.39549 -28.68146 -28.07819 -27.39902 -26.85184 -24.75209 -23.54501 -22.71685 -22.59310 -21.63758 -20.78575 -19.01559 -18.86300 -18.35353 -17.26050 -17.08921 -16.78147 -16.29049 -15.92529 -15.75997 -15.58685 -15.25987 -15.17248 -14.75176 -14.53899 -14.27462 -14.10379 -14.05076 -13.60136 -13.42396 -13.06410 -13.05143 -13.00753 -12.71184 -12.59897 -12.34311 -12.25079 -12.21322 -12.08442 -12.02399 -11.96656 -11.64812 -11.58666 -11.48308 -11.24556 -10.96691 -10.92398 -10.81679 -10.56141 -10.11757 -8.70134 -7.86352 -5.31870 -1.39731 -0.29662 0.37353 0.80178 1.48729 1.50230 1.58790 1.80729 1.85847 2.52505 2.75011 3.29359 3.37104 3.54427 3.68137 3.76549 3.96132 4.02668 4.13290 4.15005 4.16489 4.39177 4.61621 4.63281 4.73083 4.73257 4.77841 4.86599 4.89293 4.91198 4.91495 5.03198 5.08452 5.13337 5.14538 5.28830 5.29961 5.37129 5.40959 5.46929 5.53568 5.65687 5.72374 6.29672 6.39541 6.55124 6.96803 7.14909 7.85978 8.37715 9.20389 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.002809 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.719454 B = 9966.026419 C =10457.470035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C -0.136 4.136 4 C 0.105 3.895 5 N -0.262 5.262 6 N -0.280 5.280 7 S 0.500 5.500 8 C -0.309 4.309 9 C 0.603 3.397 10 O -0.544 6.544 11 N -0.697 5.697 12 C 0.171 3.829 13 H 0.068 0.932 14 C -0.134 4.134 15 C 0.182 3.818 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.073 0.927 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.266 1.266 25 C 0.150 3.850 26 C -0.102 4.102 27 H 0.083 0.917 28 C -0.137 4.137 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.051 0.949 38 H 0.063 0.937 39 H -0.008 1.008 40 H 0.055 0.945 41 H 0.249 0.751 42 H 0.065 0.935 43 H 0.012 0.988 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 14.766 16.232 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.193 4.193 4 C -0.043 4.043 5 N -0.126 5.126 6 N -0.261 5.261 7 S 0.636 5.364 8 C -0.450 4.450 9 C 0.387 3.613 10 O -0.422 6.422 11 N -0.348 5.348 12 C 0.067 3.933 13 H 0.086 0.914 14 C -0.174 4.174 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.794 3.206 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.190 1.190 25 C 0.024 3.976 26 C -0.122 4.122 27 H 0.101 0.899 28 C -0.195 4.195 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.010 0.990 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.701 14.935 17.321 22.934 hybrid contribution -0.386 -1.028 -1.660 1.991 sum -2.087 13.907 15.661 21.048 Atomic orbital electron populations 1.21776 0.92293 1.01924 1.03490 1.20203 0.97434 0.96767 0.91174 1.21766 1.00752 0.93335 1.03472 1.23133 0.94171 0.92598 0.94442 1.70604 1.20871 1.25014 0.96147 1.78674 1.14149 1.08406 1.24857 1.82160 1.36910 1.25721 0.91569 1.27736 1.11400 1.04589 1.01240 1.16603 0.78381 0.80072 0.86280 1.90785 1.58788 1.67734 1.24939 1.45891 1.50429 1.27599 1.10917 1.20810 0.93350 0.92253 0.86934 0.91363 1.22355 0.97854 0.97750 0.99447 1.20475 0.87614 0.94518 0.91803 1.44357 1.08864 1.05647 1.74360 1.19551 1.22257 0.85493 1.11687 0.90915 1.25807 1.01807 1.02146 0.94973 1.70199 1.38686 1.35647 1.13721 0.85284 0.78285 0.80789 0.76199 1.21318 1.22599 1.19003 1.21076 0.91178 0.92570 0.92757 1.21801 0.93890 0.97520 0.99029 0.89873 1.21749 0.98465 0.98191 1.01066 0.91685 0.89871 0.93561 0.87629 0.93199 0.89891 0.91737 0.75240 0.93014 0.91858 0.99010 0.92625 0.94217 0.91644 0.97019 0.93280 0.91017 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.16 71.98 0.66 -1.90 16 2 C -0.03 -0.73 3.25 -11.54 -0.04 -0.76 16 3 C -0.14 -2.41 9.16 71.98 0.66 -1.75 16 4 C 0.10 2.41 5.53 42.65 0.24 2.64 16 5 N -0.26 -6.13 11.51 -48.18 -0.55 -6.68 16 6 N -0.28 -5.94 12.51 37.02 0.46 -5.48 16 7 S 0.50 7.68 23.05 -56.49 -1.30 6.38 16 8 C -0.31 -6.73 6.81 24.62 0.17 -6.57 16 9 C 0.60 15.75 7.77 86.59 0.67 16.42 16 10 O -0.54 -18.16 14.21 -4.09 -0.06 -18.21 16 11 N -0.70 -16.20 4.36 -445.91 -1.95 -18.15 16 12 C 0.17 5.20 1.88 45.02 0.08 5.28 16 13 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 14 C -0.13 -4.97 5.65 30.67 0.17 -4.80 16 15 C 0.18 8.77 5.31 86.36 0.46 9.23 16 16 N -0.61 -29.31 2.99 -699.10 -2.09 -31.40 16 17 C -0.26 -13.74 9.59 84.03 0.81 -12.94 16 18 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 19 C -0.05 -2.85 4.91 84.86 0.42 -2.44 16 20 N -0.94 -55.22 11.19 21.65 0.24 -54.98 16 21 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 C 0.15 5.68 5.80 86.37 0.50 6.18 16 26 C -0.10 -2.85 2.46 -10.72 -0.03 -2.88 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 C -0.14 -2.82 9.02 71.98 0.65 -2.17 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 2.71 5.49 -2.39 -0.01 2.70 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.41 6.78 7.74 -92.72 -0.72 6.06 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.06 3.05 6.04 -2.39 -0.01 3.04 16 41 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 42 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.13 7.37 -2.39 -0.02 1.11 16 46 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -67.36 381.20 2.48 -64.89 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.27 Total: 14.07 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.42 Total: 3.56 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -3.89 Total: -116.69 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.06 Total: -18.21 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 7.68 SS G_CDS: -1.30 Total: 6.38 kcal Total: -67.36 2.48 -64.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943745810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.502 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds