Wall clock time and date at job start Tue Mar 31 2020 21:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46914 * 2 1 4 4 N 1.46506 * 109.46652 * 119.99106 * 2 1 3 5 5 C 1.34777 * 120.00268 * 275.00452 * 4 2 1 6 6 O 1.21552 * 119.99899 * 0.27240 * 5 4 2 7 7 C 1.47846 * 119.99810 * 180.02562 * 5 4 2 8 8 C 1.39574 * 120.14263 * 359.72495 * 7 5 4 9 9 C 1.37965 * 119.84583 * 179.72432 * 8 7 5 10 10 C 1.38361 * 120.14656 * 0.52931 * 9 8 7 11 11 C 1.50696 * 119.85112 * 179.74636 * 10 9 8 12 12 C 1.53001 * 109.47369 * 90.01923 * 11 10 9 13 13 F 1.39908 * 109.47050 * 210.01934 * 11 10 9 14 14 F 1.39901 * 109.47519 * 330.01976 * 11 10 9 15 15 C 1.38352 * 120.29259 * 359.76252 * 10 9 8 16 16 C 1.37966 * 120.14854 * 359.96055 * 15 10 9 17 17 C 1.52991 * 109.47579 * 239.99294 * 2 1 3 18 18 C 1.53942 * 113.74457 * 156.67410 * 17 2 1 19 19 N 1.47579 * 86.12115 * 222.05100 * 18 17 2 20 20 C 1.36935 * 134.49458 * 204.64688 * 19 18 17 21 21 H 1.08001 * 120.00293 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99771 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00101 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47337 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47428 * 119.99919 * 24 22 20 27 27 H 1.48501 * 109.47368 * 240.00185 * 24 22 20 28 28 C 1.47578 * 91.01422 * 24.63706 * 19 18 17 29 29 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47244 * 300.00986 * 1 2 3 31 31 H 1.09002 * 109.46826 * 60.00528 * 1 2 3 32 32 H 0.96999 * 119.99689 * 95.00568 * 4 2 1 33 33 H 1.07989 * 120.07782 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.92434 * 180.27174 * 9 8 7 35 35 H 1.09000 * 109.46964 * 59.99843 * 12 11 10 36 36 H 1.09001 * 109.47203 * 179.97438 * 12 11 10 37 37 H 1.08995 * 109.47163 * 299.99712 * 12 11 10 38 38 H 1.08004 * 119.92940 * 179.97438 * 15 10 9 39 39 H 1.07998 * 120.07558 * 179.97438 * 16 15 10 40 40 H 1.09002 * 112.94881 * 288.41390 * 17 2 1 41 41 H 1.09001 * 113.76971 * 336.35139 * 18 17 2 42 42 H 1.08997 * 113.76634 * 107.74543 * 18 17 2 43 43 H 0.97003 * 119.99787 * 180.02562 * 23 22 20 44 44 H 1.08999 * 113.77613 * 221.05867 * 28 19 18 45 45 H 1.09001 * 113.86780 * 89.67672 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1964 5 6 2.1469 -0.0180 2.3573 6 8 1.8531 1.1601 2.4129 7 6 2.6401 -0.7148 3.5644 8 6 2.9680 -2.0702 3.5065 9 6 3.4332 -2.7129 4.6352 10 6 3.5645 -2.0195 5.8253 11 6 4.0677 -2.7296 7.0555 12 6 5.5925 -2.6206 7.1194 13 9 3.5099 -2.1402 8.1951 14 9 3.6986 -4.0779 6.9997 15 6 3.2354 -0.6773 5.8909 16 6 2.7745 -0.0212 4.7682 17 6 2.0401 -0.7213 -1.2490 18 6 3.4667 -0.3147 -1.6606 19 7 2.9586 -0.3122 -3.0461 20 6 3.5331 -0.4682 -4.2793 21 1 2.9226 -0.4232 -5.1691 22 6 4.9002 -0.6841 -4.3857 23 7 5.6441 -0.7395 -3.3014 24 14 5.6840 -0.8962 -6.0680 25 1 4.6389 -0.7921 -7.1178 26 1 6.7022 0.1644 -6.2770 27 1 6.3342 -2.2290 -6.1467 28 6 1.5825 -0.0743 -2.5689 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6316 1.1529 33 1 2.8617 -2.6136 2.5793 34 1 3.6914 -3.7607 4.5907 35 1 5.8801 -1.5701 7.1630 36 1 5.9565 -3.1338 8.0095 37 1 6.0271 -3.0798 6.2316 38 1 3.3398 -0.1419 6.8230 39 1 2.5176 1.0265 4.8208 40 1 1.8829 -1.7993 -1.2113 41 1 3.7641 0.6700 -1.2999 42 1 4.2152 -1.0833 -1.4685 43 1 6.5995 -0.8900 -3.3758 44 1 0.8266 -0.6509 -3.1020 45 1 1.3246 0.9806 -2.4747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970988428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:26 Heat of formation + Delta-G solvation = -59.572558 kcal Electronic energy + Delta-G solvation = -28593.548629 eV Core-core repulsion = 24248.393979 eV Total energy + Delta-G solvation = -4345.154650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.39218 -47.39955 -40.42431 -38.96765 -37.92463 -34.91031 -33.50012 -32.26362 -31.44865 -30.75665 -29.61537 -27.54113 -25.48298 -24.70692 -23.95492 -23.05232 -22.38550 -21.21228 -20.33365 -19.30723 -18.33582 -17.81129 -17.36218 -16.76307 -16.70566 -16.24107 -15.35491 -15.03222 -14.89691 -14.80825 -14.58947 -14.23416 -14.01102 -13.86691 -13.73753 -13.59801 -13.52354 -13.29244 -13.08885 -12.99626 -12.73929 -12.50379 -12.44240 -12.11561 -11.70185 -11.50635 -11.38840 -11.32232 -11.31883 -10.93414 -10.75123 -10.37950 -10.05493 -9.79465 -9.78070 -9.43399 -9.40016 -9.35785 -8.85050 -8.81875 -6.89175 -5.78417 -3.10657 0.37095 0.97916 2.64033 3.15615 3.22657 3.37358 3.42843 3.45273 3.55160 3.66247 3.98970 4.25596 4.43346 4.48694 4.52769 4.64393 4.93853 4.95733 4.99663 5.07805 5.22552 5.24716 5.27095 5.33528 5.40111 5.51600 5.59952 5.62862 5.75960 5.83540 5.91040 5.94263 5.99165 6.01060 6.21986 6.32941 6.38385 6.40572 6.54964 6.62654 6.76443 7.21404 7.33937 7.54115 7.57511 7.96768 8.23915 9.03362 9.69419 10.58503 11.38626 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.002296 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.714655 B =12192.062369 C =13403.087191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.555 3.445 6 O -0.537 6.537 7 C -0.110 4.110 8 C -0.085 4.085 9 C -0.094 4.094 10 C -0.138 4.138 11 C 0.336 3.664 12 C -0.190 4.190 13 F -0.195 7.195 14 F -0.194 7.194 15 C -0.096 4.096 16 C -0.062 4.062 17 C -0.147 4.147 18 C 0.170 3.830 19 N -0.613 5.613 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.130 3.870 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -4.811 21.893 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.341 3.659 6 O -0.415 6.415 7 C -0.113 4.113 8 C -0.103 4.103 9 C -0.112 4.112 10 C -0.139 4.139 11 C 0.300 3.700 12 C -0.247 4.247 13 F -0.176 7.176 14 F -0.175 7.175 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.167 4.167 18 C 0.045 3.955 19 N -0.339 5.339 20 C -0.349 4.349 21 H 0.098 0.902 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.004 3.996 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.793 -4.038 21.676 22.564 hybrid contribution 0.580 -0.585 -0.830 1.169 sum -4.212 -4.623 20.846 21.764 Atomic orbital electron populations 1.22137 0.95516 1.01830 1.02210 1.21151 0.93586 0.97651 0.83054 0.89265 1.46047 1.66280 1.14089 1.09592 1.18191 0.78016 0.86559 0.83137 1.90771 1.50273 1.15469 1.84984 1.20240 1.01957 0.94317 0.94756 1.21364 0.96764 0.93465 0.98750 1.20874 0.98459 1.00441 0.91406 1.20408 1.03264 0.95587 0.94658 1.19488 0.93700 0.75068 0.81748 1.22783 0.90445 1.05859 1.05639 1.93030 1.87543 1.83899 1.53082 1.93032 1.93286 1.34628 1.96551 1.20908 0.98147 0.93106 0.99236 1.21285 0.95339 1.00816 0.90604 1.23835 1.01025 0.99680 0.92200 1.22264 0.91646 0.98301 0.83282 1.45958 1.02479 1.83258 1.02172 1.19073 0.91088 1.41869 0.82917 0.90207 1.24788 0.95974 1.02454 0.97339 1.69827 1.05093 1.55748 1.26158 0.86053 0.79230 0.77365 0.83156 1.20462 1.21756 1.21713 1.22494 0.89719 0.96785 0.90641 0.92685 0.92728 0.91271 0.76585 0.84566 0.84459 0.88928 0.89608 0.88833 0.84526 0.83848 0.89372 0.95636 0.91030 0.93737 0.93726 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.29 37.16 0.35 -1.71 16 2 C 0.15 2.25 2.41 -67.93 -0.16 2.08 16 3 H 0.09 1.56 7.37 -51.93 -0.38 1.17 16 4 N -0.71 -9.35 5.03 -54.75 -0.28 -9.63 16 5 C 0.55 7.88 7.74 -12.33 -0.10 7.78 16 6 O -0.54 -9.39 16.01 5.32 0.09 -9.31 16 7 C -0.11 -1.27 5.87 -104.97 -0.62 -1.88 16 8 C -0.08 -0.80 9.54 -39.18 -0.37 -1.17 16 9 C -0.09 -0.82 9.38 -39.64 -0.37 -1.19 16 10 C -0.14 -1.23 5.00 -104.54 -0.52 -1.76 16 11 C 0.34 2.78 2.32 -27.88 -0.06 2.72 16 12 C -0.19 -1.08 9.37 37.16 0.35 -0.73 16 13 F -0.19 -1.84 16.20 2.25 0.04 -1.80 16 14 F -0.19 -1.84 16.19 2.25 0.04 -1.81 16 15 C -0.10 -0.87 9.38 -39.64 -0.37 -1.24 16 16 C -0.06 -0.65 9.60 -39.18 -0.38 -1.03 16 17 C -0.15 -2.56 3.50 -89.70 -0.31 -2.87 16 18 C 0.17 3.90 7.07 -2.98 -0.02 3.88 16 19 N -0.61 -15.53 3.70 -177.90 -0.66 -16.19 16 20 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -27.13 11.38 55.49 0.63 -26.49 16 24 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.13 2.56 7.56 -2.97 -0.02 2.54 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.87 7.43 -51.93 -0.39 0.48 16 32 H 0.40 4.32 6.64 -40.82 -0.27 4.05 16 33 H 0.14 1.03 6.40 -52.49 -0.34 0.69 16 34 H 0.14 0.97 7.59 -52.49 -0.40 0.57 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.14 0.99 7.59 -52.48 -0.40 0.59 16 39 H 0.14 1.51 7.65 -52.49 -0.40 1.11 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.03 0.62 7.96 -51.93 -0.41 0.21 16 42 H 0.07 1.80 7.15 -51.93 -0.37 1.43 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -33.44 380.60 -8.59 -42.03 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.28 Total: 1.73 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.88 Total: -1.30 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.30 Total: -52.31 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.07 Total: -3.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.44 -8.59 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970988428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.543 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds