Wall clock time and date at job start Tue Mar 31 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46914 * 2 1 4 4 N 1.46506 * 109.46652 * 119.99106 * 2 1 3 5 5 C 1.34777 * 120.00268 * 275.00452 * 4 2 1 6 6 O 1.21552 * 119.99899 * 0.27240 * 5 4 2 7 7 C 1.47846 * 119.99810 * 180.02562 * 5 4 2 8 8 C 1.39574 * 120.14263 * 359.72495 * 7 5 4 9 9 C 1.37965 * 119.84583 * 179.72432 * 8 7 5 10 10 C 1.38361 * 120.14656 * 0.52931 * 9 8 7 11 11 C 1.50696 * 119.85112 * 179.74636 * 10 9 8 12 12 C 1.53001 * 109.47369 * 90.01923 * 11 10 9 13 13 F 1.39908 * 109.47050 * 210.01934 * 11 10 9 14 14 F 1.39901 * 109.47519 * 330.01976 * 11 10 9 15 15 C 1.38352 * 120.29259 * 359.76252 * 10 9 8 16 16 C 1.37966 * 120.14854 * 359.96055 * 15 10 9 17 17 C 1.52991 * 109.47579 * 239.99294 * 2 1 3 18 18 C 1.53942 * 113.74457 * 156.67410 * 17 2 1 19 19 N 1.47579 * 86.12115 * 222.05100 * 18 17 2 20 20 C 1.36935 * 134.49458 * 204.64688 * 19 18 17 21 21 H 1.08001 * 120.00293 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99771 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00101 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47337 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47428 * 119.99919 * 24 22 20 27 27 H 1.48501 * 109.47368 * 240.00185 * 24 22 20 28 28 C 1.47578 * 91.01422 * 24.63706 * 19 18 17 29 29 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47244 * 300.00986 * 1 2 3 31 31 H 1.09002 * 109.46826 * 60.00528 * 1 2 3 32 32 H 0.96999 * 119.99689 * 95.00568 * 4 2 1 33 33 H 1.07989 * 120.07782 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.92434 * 180.27174 * 9 8 7 35 35 H 1.09000 * 109.46964 * 59.99843 * 12 11 10 36 36 H 1.09001 * 109.47203 * 179.97438 * 12 11 10 37 37 H 1.08995 * 109.47163 * 299.99712 * 12 11 10 38 38 H 1.08004 * 119.92940 * 179.97438 * 15 10 9 39 39 H 1.07998 * 120.07558 * 179.97438 * 16 15 10 40 40 H 1.09002 * 112.94881 * 288.41390 * 17 2 1 41 41 H 1.09001 * 113.76971 * 336.35139 * 18 17 2 42 42 H 1.08997 * 113.76634 * 107.74543 * 18 17 2 43 43 H 0.97003 * 119.99787 * 180.02562 * 23 22 20 44 44 H 1.08999 * 113.77613 * 221.05867 * 28 19 18 45 45 H 1.09001 * 113.86780 * 89.67672 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1964 5 6 2.1469 -0.0180 2.3573 6 8 1.8531 1.1601 2.4129 7 6 2.6401 -0.7148 3.5644 8 6 2.9680 -2.0702 3.5065 9 6 3.4332 -2.7129 4.6352 10 6 3.5645 -2.0195 5.8253 11 6 4.0677 -2.7296 7.0555 12 6 5.5925 -2.6206 7.1194 13 9 3.5099 -2.1402 8.1951 14 9 3.6986 -4.0779 6.9997 15 6 3.2354 -0.6773 5.8909 16 6 2.7745 -0.0212 4.7682 17 6 2.0401 -0.7213 -1.2490 18 6 3.4667 -0.3147 -1.6606 19 7 2.9586 -0.3122 -3.0461 20 6 3.5331 -0.4682 -4.2793 21 1 2.9226 -0.4232 -5.1691 22 6 4.9002 -0.6841 -4.3857 23 7 5.6441 -0.7395 -3.3014 24 14 5.6840 -0.8962 -6.0680 25 1 4.6389 -0.7921 -7.1178 26 1 6.7022 0.1644 -6.2770 27 1 6.3342 -2.2290 -6.1467 28 6 1.5825 -0.0743 -2.5689 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6316 1.1529 33 1 2.8617 -2.6136 2.5793 34 1 3.6914 -3.7607 4.5907 35 1 5.8801 -1.5701 7.1630 36 1 5.9565 -3.1338 8.0095 37 1 6.0271 -3.0798 6.2316 38 1 3.3398 -0.1419 6.8230 39 1 2.5176 1.0265 4.8208 40 1 1.8829 -1.7993 -1.2113 41 1 3.7641 0.6700 -1.2999 42 1 4.2152 -1.0833 -1.4685 43 1 6.5995 -0.8900 -3.3758 44 1 0.8266 -0.6509 -3.1020 45 1 1.3246 0.9806 -2.4747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970988428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:25 Heat of formation + Delta-G solvation = -79.152584 kcal Electronic energy + Delta-G solvation = -28594.397682 eV Core-core repulsion = 24248.393979 eV Total energy + Delta-G solvation = -4346.003704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.07085 -48.08906 -41.45707 -40.15755 -39.25835 -36.26554 -34.39575 -34.00934 -32.36539 -31.72887 -30.47352 -29.33579 -26.74729 -26.01121 -25.49085 -23.85637 -23.41703 -22.41924 -21.43859 -20.72854 -19.22308 -18.75644 -18.51380 -18.27468 -17.43439 -17.32107 -16.91910 -16.32406 -16.00347 -15.80399 -15.63731 -15.60020 -14.99286 -14.85039 -14.73982 -14.66086 -14.34253 -14.25768 -14.23600 -13.89581 -13.57145 -13.42295 -13.36082 -13.24438 -13.08721 -13.08441 -12.91172 -12.70894 -12.53585 -12.23394 -12.04057 -11.94797 -11.74629 -11.51369 -11.26276 -11.00396 -10.86768 -10.26972 -10.11614 -9.96884 -8.91786 -7.90576 -5.24052 -0.44464 0.24758 1.45439 1.46545 1.56658 1.68857 2.08514 2.47214 2.55809 2.69077 3.06022 3.30281 3.35248 3.37982 3.61099 3.67201 3.77243 3.81922 3.88874 3.96541 4.22847 4.29170 4.32130 4.48174 4.52687 4.58997 4.62797 4.69938 4.74683 4.82253 4.86545 4.90225 5.00405 5.01364 5.06127 5.10471 5.20855 5.25963 5.26307 5.33613 5.45496 5.55727 5.65436 5.67968 5.94247 6.50941 6.92444 7.15933 7.61069 8.56732 9.26274 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.002296 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.714655 B =12192.062369 C =13403.087191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.061 0.939 4 N -0.703 5.703 5 C 0.554 3.446 6 O -0.577 6.577 7 C -0.129 4.129 8 C -0.081 4.081 9 C -0.094 4.094 10 C -0.137 4.137 11 C 0.333 3.667 12 C -0.188 4.188 13 F -0.203 7.203 14 F -0.201 7.201 15 C -0.094 4.094 16 C -0.071 4.071 17 C -0.109 4.109 18 C 0.167 3.833 19 N -0.645 5.645 20 C -0.233 4.233 21 H 0.085 0.915 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.978 3.022 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.290 1.290 28 C 0.130 3.870 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.412 0.588 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.002 0.998 42 H 0.043 0.957 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -6.346 22.273 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 H 0.079 0.921 4 N -0.354 5.354 5 C 0.342 3.658 6 O -0.458 6.458 7 C -0.132 4.132 8 C -0.099 4.099 9 C -0.111 4.111 10 C -0.138 4.138 11 C 0.297 3.703 12 C -0.245 4.245 13 F -0.184 7.184 14 F -0.182 7.182 15 C -0.112 4.112 16 C -0.090 4.090 17 C -0.129 4.129 18 C 0.041 3.959 19 N -0.371 5.371 20 C -0.362 4.362 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.216 1.216 28 C 0.005 3.995 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.171 0.829 39 H 0.155 0.845 40 H 0.126 0.874 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.592 -5.597 22.060 23.436 hybrid contribution 0.797 -0.095 -0.887 1.196 sum -4.795 -5.692 21.173 22.443 Atomic orbital electron populations 1.22057 0.93194 1.03236 1.02327 1.20883 0.95169 0.95900 0.82685 0.92066 1.45923 1.65982 1.14638 1.08858 1.18592 0.77197 0.86143 0.83888 1.90745 1.52171 1.17253 1.85674 1.20105 1.03914 0.95307 0.93848 1.21546 0.95953 0.92540 0.99865 1.21118 0.97757 1.01339 0.90934 1.20616 1.02424 0.95569 0.95200 1.19734 0.95096 0.74476 0.81041 1.22825 0.88292 1.06754 1.06634 1.93016 1.87850 1.84009 1.53476 1.93018 1.93497 1.35162 1.96541 1.21042 0.97541 0.93349 0.99277 1.21326 0.95864 1.00756 0.91009 1.23452 0.96277 1.00663 0.92467 1.22154 0.94208 0.96328 0.83168 1.46396 1.05150 1.83458 1.02104 1.19479 0.91571 1.40736 0.84368 0.89767 1.25637 0.96662 1.03070 1.00865 1.70016 1.04860 1.57247 1.28115 0.85012 0.78193 0.76771 0.79368 1.18897 1.22293 1.21644 1.22691 0.87741 0.97727 0.91388 0.90577 0.93202 0.90618 0.75037 0.82740 0.82500 0.88096 0.88512 0.88002 0.82914 0.84501 0.87440 0.98020 0.93836 0.94353 0.91612 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.29 71.98 0.67 -2.91 16 2 C 0.16 4.63 2.41 44.99 0.11 4.74 16 3 H 0.06 2.18 7.37 -2.39 -0.02 2.16 16 4 N -0.70 -17.97 5.03 -445.41 -2.24 -20.21 16 5 C 0.55 15.77 7.74 86.79 0.67 16.45 16 6 O -0.58 -20.78 16.01 -3.88 -0.06 -20.85 16 7 C -0.13 -2.91 5.87 -20.09 -0.12 -3.03 16 8 C -0.08 -1.39 9.54 22.53 0.21 -1.17 16 9 C -0.09 -1.44 9.38 22.23 0.21 -1.23 16 10 C -0.14 -2.21 5.00 -19.81 -0.10 -2.30 16 11 C 0.33 4.87 2.32 29.85 0.07 4.94 16 12 C -0.19 -1.72 9.37 71.98 0.67 -1.04 16 13 F -0.20 -3.50 16.20 44.97 0.73 -2.78 16 14 F -0.20 -3.43 16.19 44.97 0.73 -2.70 16 15 C -0.09 -1.59 9.38 22.23 0.21 -1.39 16 16 C -0.07 -1.49 9.60 22.53 0.22 -1.27 16 17 C -0.11 -3.65 3.50 -10.14 -0.04 -3.69 16 18 C 0.17 7.82 7.07 86.48 0.61 8.43 16 19 N -0.64 -32.75 3.70 -716.74 -2.65 -35.40 16 20 C -0.23 -13.05 10.70 84.03 0.90 -12.15 16 21 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.95 -57.49 11.38 21.65 0.25 -57.25 16 24 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 28 C 0.13 4.92 7.56 86.48 0.65 5.57 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.71 7.43 -2.39 -0.02 1.70 16 32 H 0.41 8.24 6.64 -92.71 -0.62 7.63 16 33 H 0.16 1.98 6.40 -2.92 -0.02 1.96 16 34 H 0.16 1.78 7.59 -2.91 -0.02 1.76 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.15 2.01 7.59 -2.91 -0.02 1.99 16 39 H 0.14 2.99 7.65 -2.91 -0.02 2.97 16 40 H 0.11 3.25 8.14 -2.39 -0.02 3.24 16 41 H 0.00 0.10 7.96 -2.39 -0.02 0.08 16 42 H 0.04 2.26 7.15 -2.39 -0.02 2.25 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 Total: -1.00 -73.77 380.60 4.60 -69.17 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.40 Total: 15.89 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.42 Total: 6.44 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -4.64 Total: -112.85 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.46 Total: -5.48 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.77 4.60 -69.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970988428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.979 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds