Wall clock time and date at job start Tue Mar 31 2020 21:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47245 * 2 1 4 4 C 1.50701 * 109.47050 * 119.99611 * 2 1 3 5 5 O 1.21282 * 120.00404 * 119.99803 * 4 2 1 6 6 N 1.34779 * 120.00070 * 299.99981 * 4 2 1 7 7 C 1.47426 * 125.64742 * 0.04353 * 6 4 2 8 8 C 1.54912 * 104.82949 * 204.09273 * 7 6 4 9 9 C 1.55152 * 101.58107 * 322.98696 * 8 7 6 10 10 H 1.09004 * 110.87389 * 277.07160 * 9 8 7 11 11 N 1.46498 * 110.71889 * 153.87077 * 9 8 7 12 12 C 1.46506 * 119.99807 * 306.47309 * 11 9 8 13 13 C 1.36933 * 120.00395 * 126.47821 * 11 9 8 14 14 H 1.08004 * 119.99990 * 343.30658 * 13 11 9 15 15 C 1.38807 * 120.00240 * 163.57748 * 13 11 9 16 16 N 1.31619 * 120.00217 * 343.85373 * 15 13 11 17 17 Si 1.86805 * 120.00154 * 163.85383 * 15 13 11 18 18 H 1.48493 * 109.47031 * 90.00147 * 17 15 13 19 19 H 1.48496 * 109.47093 * 210.00084 * 17 15 13 20 20 H 1.48505 * 109.46990 * 330.00041 * 17 15 13 21 21 C 1.47021 * 125.65148 * 179.97438 * 6 4 2 22 22 C 1.50697 * 109.47481 * 239.99387 * 2 1 3 23 23 C 1.38424 * 120.02613 * 299.73434 * 22 2 1 24 24 F 1.35101 * 120.00883 * 359.96766 * 23 22 2 25 25 C 1.38475 * 119.97174 * 179.74067 * 23 22 2 26 26 C 1.38204 * 120.02716 * 0.50719 * 25 23 22 27 27 C 1.38209 * 120.04996 * 359.76362 * 26 25 23 28 28 C 1.38417 * 120.02532 * 119.99810 * 22 2 1 29 29 F 1.35099 * 120.01455 * 359.97438 * 28 22 2 30 30 H 1.09000 * 109.46980 * 60.00253 * 1 2 3 31 31 H 1.08999 * 109.47735 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47557 * 300.00664 * 1 2 3 33 33 H 1.09004 * 110.36474 * 322.92745 * 7 6 4 34 34 H 1.08995 * 110.37046 * 85.13983 * 7 6 4 35 35 H 1.09010 * 110.99981 * 204.91391 * 8 7 6 36 36 H 1.08994 * 111.00656 * 81.06537 * 8 7 6 37 37 H 1.08995 * 109.47003 * 264.71942 * 12 11 9 38 38 H 1.09004 * 109.46584 * 24.72092 * 12 11 9 39 39 H 1.09002 * 109.46956 * 144.71982 * 12 11 9 40 40 H 0.97001 * 120.00642 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.87986 * 59.55580 * 21 6 4 42 42 H 1.09004 * 110.00646 * 298.46695 * 21 6 4 43 43 H 1.07999 * 119.98215 * 180.22844 * 25 23 22 44 44 H 1.07997 * 119.97089 * 179.74946 * 26 25 23 45 45 H 1.08000 * 119.98740 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 0.8701 0.9317 2.7336 8 6 1.2940 1.3918 4.1508 9 6 1.5387 0.0333 4.8592 10 1 0.6027 -0.3873 5.2266 11 7 2.5013 0.1852 5.9531 12 6 3.8076 0.7981 5.6995 13 6 2.1801 -0.2457 7.2125 14 1 1.1499 -0.4439 7.4691 15 6 3.1779 -0.4224 8.1612 16 7 4.4378 -0.4895 7.7864 17 14 2.7326 -0.5650 9.9698 18 1 2.4997 -1.9913 10.3112 19 1 3.8453 -0.0333 10.7969 20 1 1.4987 0.2163 10.2388 21 6 2.1256 -0.8432 3.7328 22 6 2.0323 -0.7105 -1.2303 23 6 1.7029 -2.0374 -1.4470 24 9 0.9311 -2.6963 -0.5551 25 6 2.1607 -2.6876 -2.5806 26 6 2.9549 -2.0154 -3.4902 27 6 3.2892 -0.6922 -3.2721 28 6 2.8282 -0.0384 -2.1418 29 9 3.1545 1.2552 -1.9293 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.0683 1.7174 2.0046 34 1 -0.1855 0.6607 2.7208 35 1 0.4920 1.9473 4.6373 36 1 2.2089 1.9829 4.1124 37 1 4.5449 0.0176 5.5121 38 1 3.7399 1.4506 4.8290 39 1 4.1097 1.3822 6.5688 40 1 5.1352 -0.6126 8.4494 41 1 3.2136 -0.8517 3.7986 42 1 1.7415 -1.8599 3.8157 43 1 1.9007 -3.7218 -2.7517 44 1 3.3148 -2.5246 -4.3720 45 1 3.9102 -0.1680 -3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971942092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:52 Heat of formation + Delta-G solvation = -61.576134 kcal Electronic energy + Delta-G solvation = -30081.274998 eV Core-core repulsion = 25736.033466 eV Total energy + Delta-G solvation = -4345.241532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.23859 -49.04827 -40.18168 -38.90256 -37.41090 -34.90088 -34.37060 -31.65164 -30.50748 -29.97223 -29.59863 -27.75268 -26.06489 -25.22454 -23.66534 -23.07060 -22.42626 -21.78514 -19.35829 -19.07107 -18.29336 -17.77312 -17.05310 -16.53182 -16.35352 -15.98156 -15.73898 -15.72482 -15.39215 -15.14298 -14.84028 -14.57294 -14.24758 -13.85196 -13.56822 -13.33232 -13.09731 -12.95692 -12.65406 -12.56385 -12.39090 -12.23344 -12.10216 -12.05439 -11.89467 -11.71445 -11.37849 -11.10573 -10.90551 -10.77103 -10.57473 -10.42925 -10.29487 -9.89882 -9.80394 -9.60904 -9.08722 -8.93001 -8.56116 -8.29480 -6.89215 -5.76523 -3.18345 0.72313 0.78867 2.82695 3.02462 3.30747 3.37198 3.43876 3.45626 3.70785 4.10646 4.20458 4.36280 4.46610 4.52692 4.66789 4.88125 4.94464 4.96990 5.02665 5.23289 5.26568 5.42521 5.46277 5.52220 5.56243 5.58905 5.67900 5.72718 5.75487 5.81778 5.88397 5.90134 5.98315 5.99241 6.32959 6.35615 6.51618 6.54674 6.67034 6.82158 6.85747 7.37984 7.68823 7.79230 7.80528 8.30953 8.38691 9.17789 9.81422 10.27816 11.28547 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002647 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.841969 B =10574.744006 C =10678.419497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.068 4.068 3 H 0.110 0.890 4 C 0.530 3.470 5 O -0.536 6.536 6 N -0.609 5.609 7 C 0.099 3.901 8 C -0.154 4.154 9 C 0.174 3.826 10 H 0.079 0.921 11 N -0.587 5.587 12 C 0.161 3.839 13 C -0.259 4.259 14 H 0.073 0.927 15 C 0.001 3.999 16 N -0.905 5.905 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.087 3.913 22 C -0.138 4.138 23 C 0.165 3.835 24 F -0.120 7.120 25 C -0.169 4.169 26 C -0.062 4.062 27 C -0.169 4.169 28 C 0.135 3.865 29 F -0.130 7.130 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.001 0.999 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 2.454 -23.427 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.089 4.089 3 H 0.128 0.872 4 C 0.318 3.682 5 O -0.413 6.413 6 N -0.342 5.342 7 C -0.024 4.024 8 C -0.194 4.194 9 C 0.063 3.937 10 H 0.097 0.903 11 N -0.307 5.307 12 C 0.017 3.983 13 C -0.389 4.389 14 H 0.091 0.909 15 C -0.197 4.197 16 N -0.550 5.550 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.037 4.037 22 C -0.140 4.140 23 C 0.145 3.855 24 F -0.099 7.099 25 C -0.188 4.188 26 C -0.080 4.080 27 C -0.188 4.188 28 C 0.115 3.885 29 F -0.108 7.108 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.011 1.904 -23.334 24.439 hybrid contribution -0.049 -0.017 1.193 1.194 sum -7.060 1.886 -22.142 23.316 Atomic orbital electron populations 1.21996 0.91525 1.03959 1.03545 1.20105 0.98324 1.00582 0.89930 0.87159 1.19854 0.80619 0.84569 0.83204 1.90710 1.38219 1.26355 1.85999 1.48446 1.50734 1.29498 1.05557 1.22446 0.94557 0.87312 0.98129 1.23367 1.02232 1.00378 0.93423 1.21323 0.93754 0.91512 0.87117 0.90332 1.43991 1.14057 1.68311 1.04381 1.20834 0.86069 0.95099 0.96323 1.19246 0.92643 1.40419 0.86551 0.90949 1.24929 0.95423 1.00600 0.98751 1.70125 0.99041 1.53475 1.32368 0.86240 0.77369 0.77766 0.85042 1.21446 1.21575 1.20539 1.22946 1.01250 0.97837 0.81706 1.19401 1.02662 0.94222 0.97720 1.17091 0.91936 0.88983 0.87498 1.91528 1.71616 1.80147 1.66561 1.21203 1.01615 1.01642 0.94347 1.20816 0.95358 0.93183 0.98684 1.21124 1.03886 0.96064 0.97743 1.17153 0.97072 0.79109 0.95138 1.91510 1.90730 1.33858 1.94747 0.91355 0.91208 0.90364 0.91294 0.91305 0.90282 0.90304 0.95411 0.98029 0.93146 0.93644 0.90990 0.92201 0.84034 0.83982 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.79 37.15 0.33 -1.25 16 2 C -0.07 -0.88 2.14 -92.93 -0.20 -1.08 16 3 H 0.11 1.30 6.83 -51.93 -0.35 0.95 16 4 C 0.53 9.04 6.65 -10.98 -0.07 8.97 16 5 O -0.54 -11.16 14.86 5.56 0.08 -11.08 16 6 N -0.61 -10.12 3.32 -170.52 -0.57 -10.68 16 7 C 0.10 1.28 5.14 -2.53 -0.01 1.27 16 8 C -0.15 -2.39 6.59 -24.58 -0.16 -2.55 16 9 C 0.17 3.41 3.44 -66.10 -0.23 3.18 16 10 H 0.08 1.51 7.89 -51.93 -0.41 1.10 16 11 N -0.59 -14.32 2.94 -171.39 -0.50 -14.83 16 12 C 0.16 3.94 7.80 59.85 0.47 4.41 16 13 C -0.26 -6.97 9.68 -15.06 -0.15 -7.11 16 14 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 15 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 16 N -0.91 -26.32 10.51 55.49 0.58 -25.74 16 17 Si 0.91 21.63 29.58 -169.99 -5.03 16.60 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.09 1.72 6.51 -3.07 -0.02 1.70 16 22 C -0.14 -1.77 4.41 -104.49 -0.46 -2.23 16 23 C 0.16 2.12 6.13 -39.43 -0.24 1.88 16 24 F -0.12 -1.77 13.80 2.25 0.03 -1.74 16 25 C -0.17 -1.66 10.02 -39.51 -0.40 -2.05 16 26 C -0.06 -0.49 10.04 -39.60 -0.40 -0.89 16 27 C -0.17 -1.50 10.02 -39.51 -0.40 -1.90 16 28 C 0.13 1.55 7.25 -39.43 -0.29 1.26 16 29 F -0.13 -1.53 16.19 2.25 0.04 -1.49 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.79 6.33 -51.93 -0.33 0.46 16 32 H 0.08 0.72 4.99 -51.93 -0.26 0.46 16 33 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 34 H 0.07 0.76 7.07 -51.93 -0.37 0.40 16 35 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.08 1.32 6.05 -51.93 -0.31 1.00 16 37 H 0.03 0.75 7.44 -51.93 -0.39 0.36 16 38 H 0.00 0.03 6.03 -51.93 -0.31 -0.28 16 39 H 0.05 1.33 6.98 -51.93 -0.36 0.97 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.07 1.65 7.13 -51.93 -0.37 1.28 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.64 361.03 -8.17 -40.81 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.93 Total: -0.83 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.31 Total: 3.55 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.49 Total: -51.25 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.07 Total: -3.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.64 -8.17 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971942092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.769 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds