Wall clock time and date at job start Tue Mar 31 2020 21:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47245 * 2 1 4 4 C 1.50701 * 109.47050 * 119.99611 * 2 1 3 5 5 O 1.21282 * 120.00404 * 119.99803 * 4 2 1 6 6 N 1.34779 * 120.00070 * 299.99981 * 4 2 1 7 7 C 1.47426 * 125.64742 * 0.04353 * 6 4 2 8 8 C 1.54912 * 104.82949 * 204.09273 * 7 6 4 9 9 C 1.55152 * 101.58107 * 322.98696 * 8 7 6 10 10 H 1.09004 * 110.87389 * 277.07160 * 9 8 7 11 11 N 1.46498 * 110.71889 * 153.87077 * 9 8 7 12 12 C 1.46506 * 119.99807 * 306.47309 * 11 9 8 13 13 C 1.36933 * 120.00395 * 126.47821 * 11 9 8 14 14 H 1.08004 * 119.99990 * 343.30658 * 13 11 9 15 15 C 1.38807 * 120.00240 * 163.57748 * 13 11 9 16 16 N 1.31619 * 120.00217 * 343.85373 * 15 13 11 17 17 Si 1.86805 * 120.00154 * 163.85383 * 15 13 11 18 18 H 1.48493 * 109.47031 * 90.00147 * 17 15 13 19 19 H 1.48496 * 109.47093 * 210.00084 * 17 15 13 20 20 H 1.48505 * 109.46990 * 330.00041 * 17 15 13 21 21 C 1.47021 * 125.65148 * 179.97438 * 6 4 2 22 22 C 1.50697 * 109.47481 * 239.99387 * 2 1 3 23 23 C 1.38424 * 120.02613 * 299.73434 * 22 2 1 24 24 F 1.35101 * 120.00883 * 359.96766 * 23 22 2 25 25 C 1.38475 * 119.97174 * 179.74067 * 23 22 2 26 26 C 1.38204 * 120.02716 * 0.50719 * 25 23 22 27 27 C 1.38209 * 120.04996 * 359.76362 * 26 25 23 28 28 C 1.38417 * 120.02532 * 119.99810 * 22 2 1 29 29 F 1.35099 * 120.01455 * 359.97438 * 28 22 2 30 30 H 1.09000 * 109.46980 * 60.00253 * 1 2 3 31 31 H 1.08999 * 109.47735 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47557 * 300.00664 * 1 2 3 33 33 H 1.09004 * 110.36474 * 322.92745 * 7 6 4 34 34 H 1.08995 * 110.37046 * 85.13983 * 7 6 4 35 35 H 1.09010 * 110.99981 * 204.91391 * 8 7 6 36 36 H 1.08994 * 111.00656 * 81.06537 * 8 7 6 37 37 H 1.08995 * 109.47003 * 264.71942 * 12 11 9 38 38 H 1.09004 * 109.46584 * 24.72092 * 12 11 9 39 39 H 1.09002 * 109.46956 * 144.71982 * 12 11 9 40 40 H 0.97001 * 120.00642 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.87986 * 59.55580 * 21 6 4 42 42 H 1.09004 * 110.00646 * 298.46695 * 21 6 4 43 43 H 1.07999 * 119.98215 * 180.22844 * 25 23 22 44 44 H 1.07997 * 119.97089 * 179.74946 * 26 25 23 45 45 H 1.08000 * 119.98740 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 0.8701 0.9317 2.7336 8 6 1.2940 1.3918 4.1508 9 6 1.5387 0.0333 4.8592 10 1 0.6027 -0.3873 5.2266 11 7 2.5013 0.1852 5.9531 12 6 3.8076 0.7981 5.6995 13 6 2.1801 -0.2457 7.2125 14 1 1.1499 -0.4439 7.4691 15 6 3.1779 -0.4224 8.1612 16 7 4.4378 -0.4895 7.7864 17 14 2.7326 -0.5650 9.9698 18 1 2.4997 -1.9913 10.3112 19 1 3.8453 -0.0333 10.7969 20 1 1.4987 0.2163 10.2388 21 6 2.1256 -0.8432 3.7328 22 6 2.0323 -0.7105 -1.2303 23 6 1.7029 -2.0374 -1.4470 24 9 0.9311 -2.6963 -0.5551 25 6 2.1607 -2.6876 -2.5806 26 6 2.9549 -2.0154 -3.4902 27 6 3.2892 -0.6922 -3.2721 28 6 2.8282 -0.0384 -2.1418 29 9 3.1545 1.2552 -1.9293 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.0683 1.7174 2.0046 34 1 -0.1855 0.6607 2.7208 35 1 0.4920 1.9473 4.6373 36 1 2.2089 1.9829 4.1124 37 1 4.5449 0.0176 5.5121 38 1 3.7399 1.4506 4.8290 39 1 4.1097 1.3822 6.5688 40 1 5.1352 -0.6126 8.4494 41 1 3.2136 -0.8517 3.7986 42 1 1.7415 -1.8599 3.8157 43 1 1.9007 -3.7218 -2.7517 44 1 3.3148 -2.5246 -4.3720 45 1 3.9102 -0.1680 -3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971942092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:50 Heat of formation + Delta-G solvation = -80.760935 kcal Electronic energy + Delta-G solvation = -30082.106913 eV Core-core repulsion = 25736.033466 eV Total energy + Delta-G solvation = -4346.073447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.07727 -50.01445 -41.43966 -39.84392 -38.84428 -36.62576 -35.42818 -33.43499 -31.36038 -31.26270 -30.66911 -29.22661 -28.10716 -26.30953 -25.05557 -23.99395 -23.80828 -22.80415 -20.93641 -20.34843 -19.14460 -18.98851 -18.74942 -17.68146 -17.48800 -17.17871 -16.90543 -16.61027 -16.54150 -16.29519 -16.24832 -15.63860 -15.43537 -15.14333 -15.07072 -14.76085 -14.49654 -14.26514 -13.83572 -13.78920 -13.58229 -13.37499 -13.28195 -13.06907 -13.04795 -12.89047 -12.75452 -12.54713 -12.43670 -12.41954 -12.19922 -12.12806 -11.93050 -11.76474 -11.44308 -10.93727 -10.62974 -9.91824 -9.72555 -9.69396 -8.91296 -7.85486 -5.29688 -0.05547 0.00495 1.47236 1.48096 1.52569 1.58067 1.88173 2.39988 2.50949 2.90822 3.21567 3.26370 3.36275 3.46515 3.54910 3.70563 3.81881 3.87313 4.04353 4.04958 4.18092 4.23647 4.25136 4.30842 4.40136 4.61526 4.66377 4.71727 4.76634 4.84069 4.85848 4.87733 4.99693 5.02119 5.05919 5.17756 5.19105 5.19962 5.20305 5.30050 5.40954 5.60474 5.69035 5.78599 6.26450 6.50018 7.04762 7.10549 7.82201 8.24952 9.18637 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002647 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.841969 B =10574.744006 C =10678.419497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 H 0.124 0.876 4 C 0.523 3.477 5 O -0.583 6.583 6 N -0.610 5.610 7 C 0.101 3.899 8 C -0.140 4.140 9 C 0.166 3.834 10 H 0.085 0.915 11 N -0.602 5.602 12 C 0.182 3.818 13 C -0.264 4.264 14 H 0.082 0.918 15 C -0.058 4.058 16 N -0.942 5.942 17 Si 0.973 3.027 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.265 1.265 21 C 0.099 3.901 22 C -0.160 4.160 23 C 0.131 3.869 24 F -0.141 7.141 25 C -0.171 4.171 26 C -0.050 4.050 27 C -0.161 4.161 28 C 0.117 3.883 29 F -0.135 7.135 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.067 0.933 37 H -0.011 1.011 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.247 0.753 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.160 0.840 44 H 0.184 0.816 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 3.810 -25.766 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 H 0.142 0.858 4 C 0.313 3.687 5 O -0.463 6.463 6 N -0.343 5.343 7 C -0.020 4.020 8 C -0.180 4.180 9 C 0.058 3.942 10 H 0.103 0.897 11 N -0.324 5.324 12 C 0.037 3.963 13 C -0.394 4.394 14 H 0.100 0.900 15 C -0.253 4.253 16 N -0.589 5.589 17 Si 0.801 3.199 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.189 1.189 21 C -0.027 4.027 22 C -0.163 4.163 23 C 0.111 3.889 24 F -0.119 7.119 25 C -0.189 4.189 26 C -0.067 4.067 27 C -0.180 4.180 28 C 0.098 3.902 29 F -0.114 7.114 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.177 0.823 44 H 0.202 0.798 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.975 3.294 -25.708 27.428 hybrid contribution 0.553 -0.501 1.779 1.929 sum -8.422 2.793 -23.929 25.521 Atomic orbital electron populations 1.22003 0.89415 1.03603 1.05382 1.20115 0.99958 1.00336 0.87682 0.85847 1.20738 0.79650 0.84144 0.84218 1.90675 1.40294 1.28619 1.86761 1.48515 1.51046 1.30338 1.04385 1.22728 0.95424 0.86632 0.97243 1.23243 1.02733 0.97538 0.94456 1.21558 0.92585 0.94148 0.85942 0.89653 1.44189 1.14550 1.68442 1.05179 1.20469 0.85692 0.93924 0.96217 1.19676 0.93026 1.38982 0.87682 0.89985 1.25758 0.95408 1.01272 1.02847 1.70314 0.99969 1.55473 1.33187 0.85193 0.77240 0.77534 0.79970 1.21523 1.22219 1.18926 1.22500 0.98588 0.97438 0.84136 1.19519 1.03908 0.94640 0.98195 1.17518 0.93283 0.89543 0.88527 1.91468 1.72382 1.80544 1.67524 1.21566 1.01199 1.02588 0.93577 1.21316 0.93554 0.92738 0.99110 1.21554 1.02969 0.96459 0.97020 1.17406 0.97602 0.79157 0.96081 1.91491 1.90824 1.34174 1.94900 0.88974 0.92676 0.88949 0.87915 0.88232 0.87692 0.91449 0.99221 0.95102 0.95587 0.94362 0.95037 0.94078 0.82281 0.79836 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.79 71.98 0.63 -2.07 16 2 C -0.06 -1.47 2.14 -12.29 -0.03 -1.50 16 3 H 0.12 2.65 6.83 -2.39 -0.02 2.64 16 4 C 0.52 17.94 6.65 87.66 0.58 18.52 16 5 O -0.58 -25.39 14.86 -3.04 -0.05 -25.43 16 6 N -0.61 -20.00 3.32 -811.79 -2.70 -22.70 16 7 C 0.10 2.31 5.14 86.86 0.45 2.76 16 8 C -0.14 -4.01 6.59 31.99 0.21 -3.80 16 9 C 0.17 6.48 3.44 46.18 0.16 6.64 16 10 H 0.09 3.20 7.89 -2.39 -0.02 3.18 16 11 N -0.60 -29.91 2.94 -696.16 -2.05 -31.96 16 12 C 0.18 9.25 7.80 127.77 1.00 10.24 16 13 C -0.26 -14.31 9.68 84.03 0.81 -13.49 16 14 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 15 C -0.06 -3.29 5.06 84.86 0.43 -2.86 16 16 N -0.94 -57.03 10.51 21.65 0.23 -56.80 16 17 Si 0.97 45.15 29.58 68.60 2.03 47.18 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.10 4.07 6.51 86.73 0.56 4.63 16 22 C -0.16 -4.01 4.41 -19.78 -0.09 -4.10 16 23 C 0.13 3.33 6.13 22.37 0.14 3.47 16 24 F -0.14 -4.26 13.80 44.97 0.62 -3.64 16 25 C -0.17 -3.07 10.02 22.32 0.22 -2.84 16 26 C -0.05 -0.62 10.04 22.25 0.22 -0.39 16 27 C -0.16 -2.39 10.02 22.32 0.22 -2.16 16 28 C 0.12 2.49 7.25 22.37 0.16 2.66 16 29 F -0.14 -2.97 16.19 44.97 0.73 -2.24 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.20 6.33 -2.39 -0.02 1.18 16 32 H 0.09 1.38 4.99 -2.39 -0.01 1.37 16 33 H 0.10 1.76 7.36 -2.38 -0.02 1.74 16 34 H 0.10 1.76 7.07 -2.39 -0.02 1.74 16 35 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.07 2.11 6.05 -2.39 -0.01 2.09 16 37 H -0.01 -0.61 7.44 -2.39 -0.02 -0.63 16 38 H 0.03 1.35 6.03 -2.39 -0.01 1.33 16 39 H 0.03 1.41 6.98 -2.39 -0.02 1.39 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.03 1.53 7.13 -2.39 -0.02 1.52 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 45 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -76.64 361.03 5.53 -71.11 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.02 Total: 8.78 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.69 Total: 15.70 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.52 Total: -111.46 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 1.35 Total: -5.88 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.64 5.53 -71.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971942092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.649 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds