Wall clock time and date at job start Tue Mar 31 2020 21:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46623 * 2 1 4 4 C 1.50695 * 109.47139 * 240.00158 * 2 1 3 5 5 O 1.21285 * 120.00234 * 333.91672 * 4 2 1 6 6 N 1.34773 * 119.99750 * 153.91452 * 4 2 1 7 7 C 1.47021 * 125.65270 * 5.06593 * 6 4 2 8 8 C 1.54325 * 107.27428 * 181.02240 * 7 6 4 9 9 C 1.55159 * 102.93848 * 22.18967 * 8 7 6 10 10 H 1.09005 * 111.00359 * 82.61701 * 9 8 7 11 11 N 1.46498 * 111.00002 * 206.42110 * 9 8 7 12 12 C 1.46510 * 120.00157 * 58.55136 * 11 9 8 13 13 C 1.36939 * 120.00676 * 238.54971 * 11 9 8 14 14 H 1.08002 * 119.99413 * 326.11156 * 13 11 9 15 15 C 1.38807 * 120.00398 * 146.10874 * 13 11 9 16 16 N 1.31619 * 119.99700 * 155.61926 * 15 13 11 17 17 Si 1.86798 * 120.00205 * 335.62150 * 15 13 11 18 18 H 1.48495 * 109.47079 * 95.28412 * 17 15 13 19 19 H 1.48497 * 109.47379 * 215.28683 * 17 15 13 20 20 H 1.48501 * 109.47115 * 335.28448 * 17 15 13 21 21 C 1.47427 * 125.64561 * 184.75589 * 6 4 2 22 22 C 1.50694 * 109.46973 * 120.00195 * 2 1 3 23 23 C 1.38423 * 120.02393 * 240.00082 * 22 2 1 24 24 F 1.35097 * 120.01051 * 359.95782 * 23 22 2 25 25 C 1.38471 * 119.97469 * 180.23116 * 23 22 2 26 26 C 1.38212 * 120.02397 * 359.49430 * 25 23 22 27 27 C 1.38205 * 120.05018 * 0.50520 * 26 25 23 28 28 C 1.38424 * 120.03103 * 59.97820 * 22 2 1 29 29 F 1.35105 * 120.00593 * 0.04540 * 28 22 2 30 30 H 1.08998 * 109.47549 * 54.46117 * 1 2 3 31 31 H 1.09000 * 109.46719 * 174.45713 * 1 2 3 32 32 H 1.09001 * 109.47248 * 294.45306 * 1 2 3 33 33 H 1.09007 * 109.87712 * 300.43913 * 7 6 4 34 34 H 1.08995 * 109.88063 * 61.60031 * 7 6 4 35 35 H 1.09001 * 110.71942 * 140.55266 * 8 7 6 36 36 H 1.08999 * 110.71670 * 263.65395 * 8 7 6 37 37 H 1.09001 * 109.46680 * 85.46518 * 12 11 9 38 38 H 1.08996 * 109.47075 * 205.47392 * 12 11 9 39 39 H 1.08999 * 109.46544 * 325.47071 * 12 11 9 40 40 H 0.97006 * 119.99603 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.36545 * 274.74669 * 21 6 4 42 42 H 1.09002 * 110.37080 * 37.06966 * 21 6 4 43 43 H 1.08009 * 119.98754 * 179.74860 * 25 23 22 44 44 H 1.08003 * 119.97100 * 180.23114 * 26 25 23 45 45 H 1.08003 * 119.98711 * 179.72402 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 1.3451 -1.5534 -1.7671 6 7 3.2453 -0.4088 -1.7346 7 6 4.2206 0.5100 -1.1295 8 6 5.4449 0.5617 -2.0676 9 6 4.8578 0.1079 -3.4302 10 1 4.3777 0.9400 -3.9453 11 7 5.8920 -0.5000 -4.2711 12 6 6.6289 -1.6727 -3.7934 13 6 6.1700 0.0277 -5.5038 14 1 5.3795 0.4681 -6.0933 15 6 7.4677 -0.0033 -5.9955 16 7 7.6806 0.0392 -7.2937 17 14 8.9117 -0.1055 -4.8150 18 1 9.3220 -1.5238 -4.6564 19 1 10.0493 0.6815 -5.3550 20 1 8.5117 0.4446 -3.4949 21 6 3.8166 -0.9506 -2.9810 22 6 2.0323 -0.7104 1.2304 23 6 2.8282 -0.0382 2.1419 24 9 3.1557 1.2549 1.9285 25 6 3.2931 -0.6934 3.2698 26 6 2.9542 -2.0150 3.4908 27 6 2.1597 -2.6871 2.5814 28 6 1.6979 -2.0356 1.4503 29 9 0.9216 -2.6930 0.5612 30 1 -0.3634 0.5973 -0.8362 31 1 -0.3633 -1.0229 -0.0993 32 1 -0.3634 0.4254 0.9355 33 1 3.7838 1.5043 -1.0348 34 1 4.5200 0.1396 -0.1491 35 1 5.8364 1.5767 -2.1351 36 1 6.2190 -0.1272 -1.7295 37 1 6.0654 -2.5759 -4.0273 38 1 7.6020 -1.7144 -4.2826 39 1 6.7674 -1.6000 -2.7147 40 1 8.5876 0.0179 -7.6373 41 1 4.3028 -1.9075 -2.7909 42 1 3.0396 -1.0626 -3.7372 43 1 3.9174 -0.1703 3.9791 44 1 3.3142 -2.5241 4.3727 45 1 1.8992 -3.7211 2.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971942093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:56 Heat of formation + Delta-G solvation = -61.686619 kcal Electronic energy + Delta-G solvation = -30507.793850 eV Core-core repulsion = 26162.547527 eV Total energy + Delta-G solvation = -4345.246323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.37005 -49.14018 -40.25484 -39.02495 -37.66256 -35.00760 -34.41705 -31.82365 -30.65908 -30.21293 -29.84238 -28.39306 -26.29328 -25.17765 -23.72883 -23.21352 -22.53461 -21.88767 -19.46381 -19.06413 -18.38605 -17.91245 -17.08097 -16.88636 -16.39973 -16.24565 -16.04088 -15.84618 -15.50737 -15.16807 -15.05873 -14.68008 -14.46893 -13.91442 -13.54246 -13.33937 -13.12854 -13.06375 -12.92835 -12.69563 -12.56251 -12.41736 -12.31510 -12.25141 -12.15596 -11.95398 -11.69512 -11.47582 -11.15057 -10.94751 -10.82621 -10.54630 -10.21591 -9.99712 -9.89352 -9.60422 -9.14737 -9.09630 -8.62167 -8.41161 -6.97908 -6.05762 -3.44275 0.54447 0.60139 2.64034 2.92856 3.12423 3.26928 3.42849 3.46939 3.53883 4.05008 4.11084 4.24238 4.40941 4.46468 4.53165 4.74411 4.76620 4.87202 5.01474 5.11451 5.16657 5.31526 5.33036 5.41941 5.45188 5.49266 5.57527 5.64372 5.67753 5.71090 5.73895 5.75672 5.88152 6.06445 6.08789 6.19257 6.30737 6.37579 6.38862 6.44858 6.60600 6.66410 6.76826 7.67414 7.93787 8.25570 8.29637 8.88249 9.63327 10.00574 11.09592 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003258 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.411473 B = 8592.840605 C = 9084.161524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 H 0.106 0.894 4 C 0.531 3.469 5 O -0.527 6.527 6 N -0.611 5.611 7 C 0.104 3.896 8 C -0.157 4.157 9 C 0.173 3.827 10 H 0.089 0.911 11 N -0.595 5.595 12 C 0.106 3.894 13 C -0.274 4.274 14 H 0.083 0.917 15 C 0.036 3.964 16 N -0.896 5.896 17 Si 0.881 3.119 18 H -0.287 1.287 19 H -0.302 1.302 20 H -0.269 1.269 21 C 0.090 3.910 22 C -0.151 4.151 23 C 0.137 3.863 24 F -0.126 7.126 25 C -0.166 4.166 26 C -0.061 4.061 27 C -0.166 4.166 28 C 0.144 3.856 29 F -0.111 7.111 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.019 0.981 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 -0.683 24.891 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 H 0.124 0.876 4 C 0.317 3.683 5 O -0.403 6.403 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.197 4.197 9 C 0.064 3.936 10 H 0.107 0.893 11 N -0.316 5.316 12 C -0.038 4.038 13 C -0.402 4.402 14 H 0.100 0.900 15 C -0.165 4.165 16 N -0.536 5.536 17 Si 0.711 3.289 18 H -0.215 1.215 19 H -0.230 1.230 20 H -0.194 1.194 21 C -0.034 4.034 22 C -0.153 4.153 23 C 0.117 3.883 24 F -0.104 7.104 25 C -0.184 4.184 26 C -0.079 4.079 27 C -0.185 4.185 28 C 0.124 3.876 29 F -0.089 7.089 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.875 -1.127 24.384 26.723 hybrid contribution 1.076 0.129 0.504 1.195 sum -9.798 -0.998 24.888 26.766 Atomic orbital electron populations 1.21736 0.91016 1.04479 1.02246 1.20159 0.98743 1.00180 0.89697 0.87606 1.19867 0.80271 0.83050 0.85077 1.90714 1.56048 1.32434 1.61076 1.48476 1.15352 1.45385 1.25318 1.22057 0.90015 0.93127 0.96785 1.23262 0.96156 1.02951 0.97334 1.21609 0.89047 0.93428 0.89525 0.89311 1.43965 1.41377 1.29238 1.17034 1.21365 0.96328 0.89574 0.96549 1.18811 0.93547 1.37408 0.90478 0.89970 1.25375 0.97467 0.98260 0.95402 1.69896 1.21214 1.51041 1.11474 0.86916 0.82792 0.76666 0.82510 1.21495 1.22989 1.19405 1.22916 0.97319 0.98464 0.84723 1.19572 1.03166 0.94273 0.98274 1.17169 0.96994 0.79206 0.94937 1.91532 1.90595 1.33662 1.94647 1.21196 1.03526 0.96031 0.97689 1.20878 0.95178 0.93219 0.98639 1.21266 1.01299 1.01785 0.94156 1.17303 0.92515 0.89338 0.88465 1.91633 1.71180 1.79971 1.66132 0.91358 0.90300 0.91835 0.91538 0.92450 0.90115 0.90804 0.96292 0.93121 0.95133 0.92585 0.91550 0.90539 0.83795 0.83812 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.56 37.16 0.32 -1.21 16 2 C -0.07 -0.81 2.27 -92.93 -0.21 -1.02 16 3 H 0.11 1.17 6.22 -51.93 -0.32 0.85 16 4 C 0.53 8.45 6.38 -10.99 -0.07 8.38 16 5 O -0.53 -10.06 14.91 5.55 0.08 -9.98 16 6 N -0.61 -9.72 3.32 -170.38 -0.57 -10.29 16 7 C 0.10 1.42 6.31 -3.06 -0.02 1.40 16 8 C -0.16 -2.52 6.52 -24.89 -0.16 -2.68 16 9 C 0.17 3.32 3.56 -65.67 -0.23 3.08 16 10 H 0.09 1.73 7.96 -51.93 -0.41 1.32 16 11 N -0.59 -13.75 2.58 -170.89 -0.44 -14.19 16 12 C 0.11 2.29 8.18 59.85 0.49 2.78 16 13 C -0.27 -7.51 9.88 -15.06 -0.15 -7.66 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 15 C 0.04 1.01 5.27 -17.43 -0.09 0.92 16 16 N -0.90 -26.97 13.97 55.49 0.78 -26.19 16 17 Si 0.88 21.69 25.03 -169.99 -4.25 17.44 16 18 H -0.29 -6.90 6.63 56.52 0.37 -6.52 16 19 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 C 0.09 1.62 6.45 -2.41 -0.02 1.61 16 22 C -0.15 -1.70 4.78 -104.49 -0.50 -2.20 16 23 C 0.14 1.33 7.04 -39.43 -0.28 1.05 16 24 F -0.13 -1.26 16.19 2.25 0.04 -1.23 16 25 C -0.17 -1.22 10.02 -39.50 -0.40 -1.62 16 26 C -0.06 -0.40 10.04 -39.60 -0.40 -0.80 16 27 C -0.17 -1.39 10.02 -39.51 -0.40 -1.78 16 28 C 0.14 1.64 6.81 -39.43 -0.27 1.37 16 29 F -0.11 -1.54 13.43 2.25 0.03 -1.51 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.00 5.99 -51.93 -0.31 0.69 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.06 0.73 7.94 -51.93 -0.41 0.31 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.23 6.29 -51.93 -0.33 0.90 16 37 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 38 H 0.05 1.18 3.16 -51.93 -0.16 1.02 16 39 H 0.03 0.58 6.30 -51.93 -0.33 0.25 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.07 1.24 6.94 -51.93 -0.36 0.88 16 42 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 43 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 45 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -32.32 361.82 -7.25 -39.57 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.99 Total: -0.68 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.38 Total: 1.61 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.23 Total: -50.67 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.07 Total: -2.74 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.25 Total: 17.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.32 -7.25 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971942093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.115 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds