Wall clock time and date at job start Tue Mar 31 2020 21:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46623 * 2 1 4 4 C 1.50695 * 109.47139 * 240.00158 * 2 1 3 5 5 O 1.21285 * 120.00234 * 333.91672 * 4 2 1 6 6 N 1.34773 * 119.99750 * 153.91452 * 4 2 1 7 7 C 1.47021 * 125.65270 * 5.06593 * 6 4 2 8 8 C 1.54325 * 107.27428 * 181.02240 * 7 6 4 9 9 C 1.55159 * 102.93848 * 22.18967 * 8 7 6 10 10 H 1.09005 * 111.00359 * 82.61701 * 9 8 7 11 11 N 1.46498 * 111.00002 * 206.42110 * 9 8 7 12 12 C 1.46510 * 120.00157 * 58.55136 * 11 9 8 13 13 C 1.36939 * 120.00676 * 238.54971 * 11 9 8 14 14 H 1.08002 * 119.99413 * 326.11156 * 13 11 9 15 15 C 1.38807 * 120.00398 * 146.10874 * 13 11 9 16 16 N 1.31619 * 119.99700 * 155.61926 * 15 13 11 17 17 Si 1.86798 * 120.00205 * 335.62150 * 15 13 11 18 18 H 1.48495 * 109.47079 * 95.28412 * 17 15 13 19 19 H 1.48497 * 109.47379 * 215.28683 * 17 15 13 20 20 H 1.48501 * 109.47115 * 335.28448 * 17 15 13 21 21 C 1.47427 * 125.64561 * 184.75589 * 6 4 2 22 22 C 1.50694 * 109.46973 * 120.00195 * 2 1 3 23 23 C 1.38423 * 120.02393 * 240.00082 * 22 2 1 24 24 F 1.35097 * 120.01051 * 359.95782 * 23 22 2 25 25 C 1.38471 * 119.97469 * 180.23116 * 23 22 2 26 26 C 1.38212 * 120.02397 * 359.49430 * 25 23 22 27 27 C 1.38205 * 120.05018 * 0.50520 * 26 25 23 28 28 C 1.38424 * 120.03103 * 59.97820 * 22 2 1 29 29 F 1.35105 * 120.00593 * 0.04540 * 28 22 2 30 30 H 1.08998 * 109.47549 * 54.46117 * 1 2 3 31 31 H 1.09000 * 109.46719 * 174.45713 * 1 2 3 32 32 H 1.09001 * 109.47248 * 294.45306 * 1 2 3 33 33 H 1.09007 * 109.87712 * 300.43913 * 7 6 4 34 34 H 1.08995 * 109.88063 * 61.60031 * 7 6 4 35 35 H 1.09001 * 110.71942 * 140.55266 * 8 7 6 36 36 H 1.08999 * 110.71670 * 263.65395 * 8 7 6 37 37 H 1.09001 * 109.46680 * 85.46518 * 12 11 9 38 38 H 1.08996 * 109.47075 * 205.47392 * 12 11 9 39 39 H 1.08999 * 109.46544 * 325.47071 * 12 11 9 40 40 H 0.97006 * 119.99603 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.36545 * 274.74669 * 21 6 4 42 42 H 1.09002 * 110.37080 * 37.06966 * 21 6 4 43 43 H 1.08009 * 119.98754 * 179.74860 * 25 23 22 44 44 H 1.08003 * 119.97100 * 180.23114 * 26 25 23 45 45 H 1.08003 * 119.98711 * 179.72402 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 1.3451 -1.5534 -1.7671 6 7 3.2453 -0.4088 -1.7346 7 6 4.2206 0.5100 -1.1295 8 6 5.4449 0.5617 -2.0676 9 6 4.8578 0.1079 -3.4302 10 1 4.3777 0.9400 -3.9453 11 7 5.8920 -0.5000 -4.2711 12 6 6.6289 -1.6727 -3.7934 13 6 6.1700 0.0277 -5.5038 14 1 5.3795 0.4681 -6.0933 15 6 7.4677 -0.0033 -5.9955 16 7 7.6806 0.0392 -7.2937 17 14 8.9117 -0.1055 -4.8150 18 1 9.3220 -1.5238 -4.6564 19 1 10.0493 0.6815 -5.3550 20 1 8.5117 0.4446 -3.4949 21 6 3.8166 -0.9506 -2.9810 22 6 2.0323 -0.7104 1.2304 23 6 2.8282 -0.0382 2.1419 24 9 3.1557 1.2549 1.9285 25 6 3.2931 -0.6934 3.2698 26 6 2.9542 -2.0150 3.4908 27 6 2.1597 -2.6871 2.5814 28 6 1.6979 -2.0356 1.4503 29 9 0.9216 -2.6930 0.5612 30 1 -0.3634 0.5973 -0.8362 31 1 -0.3633 -1.0229 -0.0993 32 1 -0.3634 0.4254 0.9355 33 1 3.7838 1.5043 -1.0348 34 1 4.5200 0.1396 -0.1491 35 1 5.8364 1.5767 -2.1351 36 1 6.2190 -0.1272 -1.7295 37 1 6.0654 -2.5759 -4.0273 38 1 7.6020 -1.7144 -4.2826 39 1 6.7674 -1.6000 -2.7147 40 1 8.5876 0.0179 -7.6373 41 1 4.3028 -1.9075 -2.7909 42 1 3.0396 -1.0626 -3.7372 43 1 3.9174 -0.1703 3.9791 44 1 3.3142 -2.5241 4.3727 45 1 1.8992 -3.7211 2.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971942093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:54 Heat of formation + Delta-G solvation = -80.972380 kcal Electronic energy + Delta-G solvation = -30508.630143 eV Core-core repulsion = 26162.547527 eV Total energy + Delta-G solvation = -4346.082616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.05417 -50.00768 -41.44081 -39.85366 -39.03725 -36.70225 -35.34141 -33.80013 -31.67441 -31.28397 -30.59352 -29.79913 -28.14108 -26.41566 -24.91563 -24.11076 -23.80807 -22.84402 -21.05089 -20.17414 -19.11182 -19.04802 -18.85999 -17.93378 -17.73668 -17.19095 -17.09341 -16.67233 -16.57357 -16.32045 -16.16036 -15.72859 -15.41377 -15.33261 -14.90033 -14.81519 -14.66853 -14.34917 -14.10487 -13.90516 -13.80709 -13.72333 -13.43869 -13.22075 -13.12208 -12.97929 -12.94534 -12.60750 -12.45875 -12.44445 -12.32412 -12.06299 -11.93604 -11.63242 -11.48849 -11.09025 -10.67573 -9.91509 -9.78661 -9.73970 -8.89740 -8.22502 -5.58723 -0.11091 -0.04468 1.32381 1.43417 1.44873 1.55178 1.82562 2.35579 2.41722 2.85980 2.99784 3.21703 3.31775 3.34428 3.42915 3.61800 3.75344 3.85672 3.87973 4.06724 4.11436 4.15989 4.22626 4.24340 4.32313 4.47949 4.59084 4.66387 4.69961 4.72943 4.75095 4.80989 4.84566 4.90672 4.95764 4.99861 5.05237 5.10276 5.18023 5.19681 5.21546 5.28541 5.75516 5.86549 6.12643 6.43103 6.88968 7.01914 7.56390 7.96390 8.97125 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003258 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.411473 B = 8592.840605 C = 9084.161524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 H 0.121 0.879 4 C 0.526 3.474 5 O -0.567 6.567 6 N -0.613 5.613 7 C 0.110 3.890 8 C -0.146 4.146 9 C 0.168 3.832 10 H 0.076 0.924 11 N -0.606 5.606 12 C 0.105 3.895 13 C -0.268 4.268 14 H 0.043 0.957 15 C -0.021 4.021 16 N -0.947 5.947 17 Si 0.950 3.050 18 H -0.276 1.276 19 H -0.309 1.309 20 H -0.248 1.248 21 C 0.100 3.900 22 C -0.167 4.167 23 C 0.128 3.872 24 F -0.129 7.129 25 C -0.155 4.155 26 C -0.047 4.047 27 C -0.165 4.165 28 C 0.110 3.890 29 F -0.136 7.136 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.021 0.979 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.264 0.736 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 -0.344 29.744 31.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 H 0.139 0.861 4 C 0.315 3.685 5 O -0.446 6.446 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.185 4.185 9 C 0.060 3.940 10 H 0.094 0.906 11 N -0.329 5.329 12 C -0.039 4.039 13 C -0.397 4.397 14 H 0.060 0.940 15 C -0.218 4.218 16 N -0.591 5.591 17 Si 0.778 3.222 18 H -0.204 1.204 19 H -0.238 1.238 20 H -0.172 1.172 21 C -0.025 4.025 22 C -0.169 4.169 23 C 0.108 3.892 24 F -0.107 7.107 25 C -0.174 4.174 26 C -0.064 4.064 27 C -0.183 4.183 28 C 0.091 3.909 29 F -0.115 7.115 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.191 0.809 44 H 0.201 0.799 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.682 -0.775 29.302 30.870 hybrid contribution 0.575 -0.027 -0.987 1.142 sum -9.107 -0.802 28.315 29.755 Atomic orbital electron populations 1.21723 0.90675 1.03366 1.03445 1.20114 0.99060 1.00372 0.88421 0.86144 1.20618 0.79627 0.82536 0.85690 1.90691 1.57104 1.34324 1.62481 1.48543 1.15953 1.45654 1.24501 1.22153 0.88482 0.93911 0.96675 1.23134 0.96972 1.03452 0.94974 1.21631 0.88390 0.93209 0.90763 0.90566 1.43972 1.42290 1.30131 1.16514 1.21424 0.95229 0.88961 0.98302 1.18677 0.92695 1.36455 0.91915 0.93970 1.26030 1.00309 0.98699 0.96736 1.70032 1.21742 1.53676 1.13641 0.85795 0.78578 0.77072 0.80733 1.20352 1.23801 1.17161 1.22582 0.96358 0.98033 0.85533 1.19513 1.04601 0.94461 0.98348 1.17315 0.97162 0.79186 0.95505 1.91524 1.90614 1.33837 1.94752 1.21604 1.02584 0.96281 0.96901 1.21353 0.93309 0.92848 0.98912 1.21577 1.00857 1.02637 0.93265 1.17730 0.93790 0.89925 0.89489 1.91571 1.72168 1.80481 1.67270 0.91498 0.92345 0.89439 0.89226 0.90399 0.88994 0.90559 0.96103 0.94648 0.91796 0.92662 0.92124 0.92953 0.80929 0.79908 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.56 71.98 0.62 -2.34 16 2 C -0.06 -1.37 2.27 -12.29 -0.03 -1.40 16 3 H 0.12 2.39 6.22 -2.39 -0.01 2.37 16 4 C 0.53 16.71 6.38 87.66 0.56 17.27 16 5 O -0.57 -22.48 14.91 -3.05 -0.05 -22.53 16 6 N -0.61 -18.94 3.32 -811.35 -2.70 -21.63 16 7 C 0.11 2.68 6.31 86.73 0.55 3.22 16 8 C -0.15 -4.25 6.52 31.78 0.21 -4.04 16 9 C 0.17 6.37 3.56 46.46 0.17 6.53 16 10 H 0.08 3.04 7.96 -2.38 -0.02 3.03 16 11 N -0.61 -27.94 2.58 -694.58 -1.79 -29.73 16 12 C 0.10 4.34 8.18 127.77 1.04 5.39 16 13 C -0.27 -15.08 9.88 84.03 0.83 -14.25 16 14 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 15 C -0.02 -1.21 5.27 84.86 0.45 -0.76 16 16 N -0.95 -58.91 13.97 21.65 0.30 -58.61 16 17 Si 0.95 44.63 25.03 68.60 1.72 46.34 16 18 H -0.28 -12.41 6.63 99.48 0.66 -11.75 16 19 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 20 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 21 C 0.10 3.64 6.45 86.93 0.56 4.20 16 22 C -0.17 -3.44 4.78 -19.78 -0.09 -3.53 16 23 C 0.13 2.04 7.04 22.37 0.16 2.20 16 24 F -0.13 -2.11 16.19 44.97 0.73 -1.38 16 25 C -0.16 -1.55 10.02 22.32 0.22 -1.33 16 26 C -0.05 -0.39 10.04 22.26 0.22 -0.16 16 27 C -0.16 -2.29 10.02 22.32 0.22 -2.06 16 28 C 0.11 2.38 6.81 22.37 0.15 2.53 16 29 F -0.14 -3.89 13.43 44.97 0.60 -3.29 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.54 5.99 -2.39 -0.01 1.52 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.82 7.68 -2.38 -0.02 1.80 16 34 H 0.08 1.65 7.94 -2.39 -0.02 1.63 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.08 2.22 6.29 -2.39 -0.02 2.21 16 37 H 0.02 0.85 7.93 -2.39 -0.02 0.83 16 38 H 0.04 1.58 3.16 -2.39 -0.01 1.57 16 39 H 0.06 2.21 6.30 -2.39 -0.02 2.20 16 40 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 41 H 0.06 2.27 6.94 -2.38 -0.02 2.26 16 42 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 43 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 45 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -74.18 361.82 5.63 -68.55 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.97 Total: 10.82 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.84 Total: 11.46 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.19 Total: -109.98 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.33 Total: -4.66 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.72 Total: 46.34 kcal Total: -74.18 5.63 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971942093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.423 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds