Wall clock time and date at job start Tue Mar 31 2020 21:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47143 * 2 1 4 4 C 1.50703 * 109.47221 * 120.00610 * 2 1 3 5 5 O 1.21277 * 120.00124 * 97.70981 * 4 2 1 6 6 N 1.34776 * 119.99611 * 277.70716 * 4 2 1 7 7 C 1.47429 * 125.65059 * 184.92941 * 6 4 2 8 8 C 1.54901 * 104.83619 * 155.91872 * 7 6 4 9 9 C 1.55157 * 101.58208 * 37.00945 * 8 7 6 10 10 H 1.08998 * 110.72471 * 83.03931 * 9 8 7 11 11 N 1.46500 * 110.72194 * 206.13782 * 9 8 7 12 12 C 1.46504 * 119.99953 * 58.54491 * 11 9 8 13 13 C 1.36934 * 120.00274 * 238.54772 * 11 9 8 14 14 H 1.08001 * 119.99845 * 19.26037 * 13 11 9 15 15 C 1.38809 * 120.00496 * 199.26312 * 13 11 9 16 16 N 1.31619 * 119.99793 * 14.85660 * 15 13 11 17 17 Si 1.86799 * 120.00298 * 194.85903 * 15 13 11 18 18 H 1.48498 * 109.46989 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47042 * 119.99970 * 17 15 13 20 20 H 1.48500 * 109.47195 * 239.99908 * 17 15 13 21 21 C 1.47027 * 125.64883 * 4.98174 * 6 4 2 22 22 C 1.50698 * 109.46923 * 240.00173 * 2 1 3 23 23 C 1.38421 * 120.02747 * 299.71928 * 22 2 1 24 24 F 1.35097 * 120.01240 * 0.02562 * 23 22 2 25 25 C 1.38473 * 119.97531 * 179.79025 * 23 22 2 26 26 C 1.38214 * 120.02651 * 0.49186 * 25 23 22 27 27 C 1.38211 * 120.04698 * 359.74149 * 26 25 23 28 28 C 1.38425 * 120.02715 * 120.00190 * 22 2 1 29 29 F 1.35100 * 120.00978 * 359.97438 * 28 22 2 30 30 H 1.09002 * 109.47265 * 186.28858 * 1 2 3 31 31 H 1.09000 * 109.47057 * 306.28794 * 1 2 3 32 32 H 1.09002 * 109.47203 * 66.28795 * 1 2 3 33 33 H 1.08998 * 110.36356 * 37.07263 * 7 6 4 34 34 H 1.09000 * 110.45483 * 274.80359 * 7 6 4 35 35 H 1.09006 * 111.00490 * 278.93725 * 8 7 6 36 36 H 1.09000 * 111.04150 * 155.09476 * 8 7 6 37 37 H 1.09000 * 109.47531 * 95.22829 * 12 11 9 38 38 H 1.09008 * 109.46913 * 215.22695 * 12 11 9 39 39 H 1.09000 * 109.47352 * 335.22056 * 12 11 9 40 40 H 0.97004 * 120.00388 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.88047 * 61.59831 * 21 6 4 42 42 H 1.08998 * 109.88472 * 300.42929 * 21 6 4 43 43 H 1.08000 * 119.99167 * 180.23575 * 25 23 22 44 44 H 1.07993 * 119.97494 * 179.72263 * 26 25 23 45 45 H 1.07996 * 119.98514 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3673 -1.8743 1.1643 6 7 2.1094 -0.0527 2.4042 7 6 2.6747 -0.5904 3.6551 8 6 3.0972 0.6584 4.4684 9 6 1.9597 1.6552 4.1221 10 1 1.0896 1.4828 4.7557 11 7 2.4256 3.0382 4.2498 12 6 3.5659 3.5033 3.4561 13 6 1.7955 3.8963 5.1111 14 1 1.1802 3.5060 5.9082 15 6 1.9475 5.2677 4.9596 16 7 2.4419 5.7555 3.8415 17 14 1.4505 6.4210 6.3424 18 1 0.9272 5.6284 7.4840 19 1 2.6333 7.2029 6.7841 20 1 0.3965 7.3486 5.8587 21 6 1.6426 1.3198 2.6495 22 6 2.0323 -0.7104 -1.2305 23 6 1.7030 -2.0373 -1.4472 24 9 0.9306 -2.6961 -0.5558 25 6 2.1615 -2.6877 -2.5804 26 6 2.9561 -2.0155 -3.4898 27 6 3.2895 -0.6920 -3.2721 28 6 2.8281 -0.0382 -2.1420 29 9 3.1546 1.2554 -1.9292 30 1 -0.3634 -1.0215 0.1126 31 1 -0.3633 0.6082 0.8284 32 1 -0.3634 0.4133 -0.9409 33 1 3.5418 -1.2154 3.4416 34 1 1.9217 -1.1605 4.1992 35 1 4.0630 1.0355 4.1318 36 1 3.1152 0.4421 5.5366 37 1 3.2040 3.9873 2.5491 38 1 4.1488 4.2155 4.0403 39 1 4.1934 2.6531 3.1888 40 1 2.5485 6.7138 3.7357 41 1 0.5679 1.3819 2.4783 42 1 2.1657 2.0127 1.9905 43 1 1.9016 -3.7219 -2.7517 44 1 3.3169 -2.5249 -4.3711 45 1 3.9108 -0.1679 -3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971942095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:03 Heat of formation + Delta-G solvation = -66.294789 kcal Electronic energy + Delta-G solvation = -30319.967417 eV Core-core repulsion = 25974.521269 eV Total energy + Delta-G solvation = -4345.446148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.11990 -48.89644 -40.13113 -38.85790 -37.44985 -34.76028 -34.34528 -31.63275 -30.43915 -30.27958 -29.25849 -27.80291 -26.10212 -25.10281 -23.63666 -22.98233 -22.71206 -21.39693 -19.45135 -18.97026 -18.15195 -17.74384 -17.08989 -16.50219 -16.30538 -15.94637 -15.75952 -15.62784 -15.26469 -15.00985 -14.75337 -14.46611 -14.15758 -13.96566 -13.47496 -13.33723 -13.01294 -12.84924 -12.63714 -12.46628 -12.36137 -12.29647 -12.10141 -12.03316 -11.77679 -11.53570 -11.43693 -11.00835 -10.95039 -10.82310 -10.61153 -10.50588 -10.30142 -9.95900 -9.86283 -9.61666 -9.01474 -8.86076 -8.61674 -8.30866 -6.90684 -5.80930 -3.25315 0.77391 0.85567 2.79387 3.07705 3.32222 3.34131 3.41780 3.43261 3.79426 4.22112 4.28655 4.38678 4.47127 4.58938 4.73732 4.94431 5.07709 5.15458 5.15908 5.20666 5.33360 5.48834 5.55699 5.58882 5.62417 5.65550 5.75386 5.77418 5.82873 5.87966 5.90949 5.95322 6.01657 6.09823 6.23329 6.34564 6.51900 6.55273 6.61762 6.74353 6.82682 7.31998 7.64174 7.74448 7.78265 8.27845 8.35093 9.13749 9.76715 10.24015 11.23709 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.003045 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.856106 B = 9192.200989 C = 9946.071026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 H 0.110 0.890 4 C 0.535 3.465 5 O -0.542 6.542 6 N -0.609 5.609 7 C 0.111 3.889 8 C -0.154 4.154 9 C 0.174 3.826 10 H 0.080 0.920 11 N -0.587 5.587 12 C 0.160 3.840 13 C -0.259 4.259 14 H 0.072 0.928 15 C 0.003 3.997 16 N -0.905 5.905 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.075 3.925 22 C -0.147 4.147 23 C 0.171 3.829 24 F -0.115 7.115 25 C -0.175 4.175 26 C -0.062 4.062 27 C -0.173 4.173 28 C 0.137 3.863 29 F -0.126 7.126 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.001 0.999 40 H 0.253 0.747 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -14.433 -13.250 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 H 0.128 0.872 4 C 0.322 3.678 5 O -0.420 6.420 6 N -0.343 5.343 7 C -0.012 4.012 8 C -0.194 4.194 9 C 0.064 3.936 10 H 0.098 0.902 11 N -0.307 5.307 12 C 0.016 3.984 13 C -0.389 4.389 14 H 0.090 0.910 15 C -0.195 4.195 16 N -0.549 5.549 17 Si 0.736 3.264 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.050 4.050 22 C -0.150 4.150 23 C 0.151 3.849 24 F -0.093 7.093 25 C -0.194 4.194 26 C -0.080 4.080 27 C -0.192 4.192 28 C 0.118 3.882 29 F -0.105 7.105 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.360 -14.830 -13.323 19.939 hybrid contribution -0.266 1.021 0.820 1.336 sum -0.626 -13.809 -12.503 18.639 Atomic orbital electron populations 1.21794 0.91187 1.03610 1.03430 1.20089 0.98518 1.00731 0.89602 0.87184 1.19864 0.78210 0.86399 0.83292 1.90681 1.50092 1.16111 1.85102 1.48466 1.60139 1.16264 1.09404 1.22182 0.97921 0.96791 0.84291 1.23384 1.01401 0.95003 0.99593 1.21318 0.94901 0.85849 0.91569 0.90215 1.43964 1.32883 1.05848 1.48041 1.20811 0.87802 0.94100 0.95696 1.19281 1.26835 0.87011 1.05743 0.91007 1.24969 1.00654 0.97076 0.96838 1.70104 1.49518 1.11877 1.23419 0.86172 0.77734 0.80902 0.81628 1.20291 1.21585 1.21728 1.23051 0.98978 0.81167 1.01785 1.19495 1.03042 0.94355 0.98059 1.17081 0.91606 0.88923 0.87280 1.91545 1.71353 1.79984 1.66390 1.21198 1.02035 1.01640 0.94528 1.20814 0.95372 0.93185 0.98590 1.21129 1.04169 0.96061 0.97800 1.17222 0.96795 0.79219 0.94990 1.91549 1.90591 1.33659 1.94669 0.91278 0.90791 0.91201 0.91270 0.91836 0.90613 0.90360 0.95135 0.93466 0.98067 0.93683 0.91863 0.90770 0.84148 0.84077 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.86 37.16 0.33 -1.46 16 2 C -0.07 -0.99 2.20 -92.92 -0.20 -1.19 16 3 H 0.11 1.63 6.38 -51.93 -0.33 1.30 16 4 C 0.53 9.05 6.81 -10.98 -0.07 8.98 16 5 O -0.54 -10.37 13.89 5.56 0.08 -10.29 16 6 N -0.61 -10.13 3.33 -170.52 -0.57 -10.70 16 7 C 0.11 1.72 6.89 -2.53 -0.02 1.70 16 8 C -0.15 -2.52 6.60 -24.59 -0.16 -2.68 16 9 C 0.17 3.30 3.44 -66.09 -0.23 3.08 16 10 H 0.08 1.49 7.92 -51.93 -0.41 1.08 16 11 N -0.59 -13.76 2.94 -171.38 -0.50 -14.26 16 12 C 0.16 3.77 7.56 59.85 0.45 4.22 16 13 C -0.26 -6.74 9.64 -15.06 -0.15 -6.89 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 16 N -0.90 -25.34 10.59 55.49 0.59 -24.75 16 17 Si 0.91 21.12 29.58 -169.99 -5.03 16.10 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 C 0.08 1.31 5.88 -3.06 -0.02 1.29 16 22 C -0.15 -2.02 4.63 -104.49 -0.48 -2.51 16 23 C 0.17 2.25 6.17 -39.43 -0.24 2.01 16 24 F -0.11 -1.71 13.13 2.25 0.03 -1.68 16 25 C -0.18 -1.75 10.03 -39.50 -0.40 -2.15 16 26 C -0.06 -0.51 10.04 -39.60 -0.40 -0.91 16 27 C -0.17 -1.66 10.02 -39.51 -0.40 -2.06 16 28 C 0.14 1.73 7.25 -39.43 -0.29 1.44 16 29 F -0.13 -1.74 16.19 2.25 0.04 -1.70 16 30 H 0.07 0.89 6.52 -51.93 -0.34 0.55 16 31 H 0.07 0.91 6.76 -51.93 -0.35 0.56 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.33 6.36 -51.93 -0.33 1.00 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.78 7.34 -51.93 -0.38 0.39 16 38 H 0.05 1.21 7.14 -51.92 -0.37 0.84 16 39 H 0.00 0.02 6.37 -51.93 -0.33 -0.31 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.06 1.04 6.84 -51.93 -0.36 0.69 16 42 H 0.07 1.41 6.49 -51.93 -0.34 1.07 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.51 363.01 -8.30 -38.81 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.04 Total: 0.14 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.36 Total: 2.87 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.48 Total: -49.71 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.38 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.51 -8.30 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971942095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.490 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds