Wall clock time and date at job start Tue Mar 31 2020 21:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47143 * 2 1 4 4 C 1.50703 * 109.47221 * 120.00610 * 2 1 3 5 5 O 1.21277 * 120.00124 * 97.70981 * 4 2 1 6 6 N 1.34776 * 119.99611 * 277.70716 * 4 2 1 7 7 C 1.47429 * 125.65059 * 184.92941 * 6 4 2 8 8 C 1.54901 * 104.83619 * 155.91872 * 7 6 4 9 9 C 1.55157 * 101.58208 * 37.00945 * 8 7 6 10 10 H 1.08998 * 110.72471 * 83.03931 * 9 8 7 11 11 N 1.46500 * 110.72194 * 206.13782 * 9 8 7 12 12 C 1.46504 * 119.99953 * 58.54491 * 11 9 8 13 13 C 1.36934 * 120.00274 * 238.54772 * 11 9 8 14 14 H 1.08001 * 119.99845 * 19.26037 * 13 11 9 15 15 C 1.38809 * 120.00496 * 199.26312 * 13 11 9 16 16 N 1.31619 * 119.99793 * 14.85660 * 15 13 11 17 17 Si 1.86799 * 120.00298 * 194.85903 * 15 13 11 18 18 H 1.48498 * 109.46989 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47042 * 119.99970 * 17 15 13 20 20 H 1.48500 * 109.47195 * 239.99908 * 17 15 13 21 21 C 1.47027 * 125.64883 * 4.98174 * 6 4 2 22 22 C 1.50698 * 109.46923 * 240.00173 * 2 1 3 23 23 C 1.38421 * 120.02747 * 299.71928 * 22 2 1 24 24 F 1.35097 * 120.01240 * 0.02562 * 23 22 2 25 25 C 1.38473 * 119.97531 * 179.79025 * 23 22 2 26 26 C 1.38214 * 120.02651 * 0.49186 * 25 23 22 27 27 C 1.38211 * 120.04698 * 359.74149 * 26 25 23 28 28 C 1.38425 * 120.02715 * 120.00190 * 22 2 1 29 29 F 1.35100 * 120.00978 * 359.97438 * 28 22 2 30 30 H 1.09002 * 109.47265 * 186.28858 * 1 2 3 31 31 H 1.09000 * 109.47057 * 306.28794 * 1 2 3 32 32 H 1.09002 * 109.47203 * 66.28795 * 1 2 3 33 33 H 1.08998 * 110.36356 * 37.07263 * 7 6 4 34 34 H 1.09000 * 110.45483 * 274.80359 * 7 6 4 35 35 H 1.09006 * 111.00490 * 278.93725 * 8 7 6 36 36 H 1.09000 * 111.04150 * 155.09476 * 8 7 6 37 37 H 1.09000 * 109.47531 * 95.22829 * 12 11 9 38 38 H 1.09008 * 109.46913 * 215.22695 * 12 11 9 39 39 H 1.09000 * 109.47352 * 335.22056 * 12 11 9 40 40 H 0.97004 * 120.00388 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.88047 * 61.59831 * 21 6 4 42 42 H 1.08998 * 109.88472 * 300.42929 * 21 6 4 43 43 H 1.08000 * 119.99167 * 180.23575 * 25 23 22 44 44 H 1.07993 * 119.97494 * 179.72263 * 26 25 23 45 45 H 1.07996 * 119.98514 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3673 -1.8743 1.1643 6 7 2.1094 -0.0527 2.4042 7 6 2.6747 -0.5904 3.6551 8 6 3.0972 0.6584 4.4684 9 6 1.9597 1.6552 4.1221 10 1 1.0896 1.4828 4.7557 11 7 2.4256 3.0382 4.2498 12 6 3.5659 3.5033 3.4561 13 6 1.7955 3.8963 5.1111 14 1 1.1802 3.5060 5.9082 15 6 1.9475 5.2677 4.9596 16 7 2.4419 5.7555 3.8415 17 14 1.4505 6.4210 6.3424 18 1 0.9272 5.6284 7.4840 19 1 2.6333 7.2029 6.7841 20 1 0.3965 7.3486 5.8587 21 6 1.6426 1.3198 2.6495 22 6 2.0323 -0.7104 -1.2305 23 6 1.7030 -2.0373 -1.4472 24 9 0.9306 -2.6961 -0.5558 25 6 2.1615 -2.6877 -2.5804 26 6 2.9561 -2.0155 -3.4898 27 6 3.2895 -0.6920 -3.2721 28 6 2.8281 -0.0382 -2.1420 29 9 3.1546 1.2554 -1.9292 30 1 -0.3634 -1.0215 0.1126 31 1 -0.3633 0.6082 0.8284 32 1 -0.3634 0.4133 -0.9409 33 1 3.5418 -1.2154 3.4416 34 1 1.9217 -1.1605 4.1992 35 1 4.0630 1.0355 4.1318 36 1 3.1152 0.4421 5.5366 37 1 3.2040 3.9873 2.5491 38 1 4.1488 4.2155 4.0403 39 1 4.1934 2.6531 3.1888 40 1 2.5485 6.7138 3.7357 41 1 0.5679 1.3819 2.4783 42 1 2.1657 2.0127 1.9905 43 1 1.9016 -3.7219 -2.7517 44 1 3.3169 -2.5249 -4.3711 45 1 3.9108 -0.1679 -3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971942095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:02 Heat of formation + Delta-G solvation = -82.301726 kcal Electronic energy + Delta-G solvation = -30320.661530 eV Core-core repulsion = 25974.521269 eV Total energy + Delta-G solvation = -4346.140261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.09334 -49.89335 -41.41903 -39.84577 -38.86436 -36.50739 -35.42078 -33.39265 -31.64638 -31.25132 -30.35537 -29.33501 -28.06968 -26.25788 -25.08686 -24.13882 -23.83245 -22.54207 -21.04692 -20.23269 -19.07879 -18.99818 -18.78120 -17.65676 -17.52235 -17.25441 -16.83329 -16.61597 -16.54255 -16.24726 -16.02492 -15.73412 -15.36597 -15.09447 -14.97956 -14.87032 -14.49727 -14.27084 -13.86685 -13.72733 -13.61605 -13.31611 -13.22071 -13.15858 -13.03899 -12.89219 -12.77540 -12.53447 -12.48875 -12.39609 -12.23113 -12.07723 -11.96449 -11.79297 -11.49417 -10.95143 -10.62320 -9.93126 -9.72691 -9.66268 -8.84934 -7.82663 -5.28672 -0.06740 0.01796 1.47583 1.48340 1.50989 1.60270 1.88230 2.40587 2.52121 2.92437 3.22919 3.25809 3.30859 3.45993 3.63041 3.72357 3.82918 3.87640 3.95230 4.03614 4.14696 4.23812 4.26646 4.29668 4.40948 4.58740 4.61882 4.69645 4.77847 4.81016 4.82314 4.89808 4.97948 5.02418 5.05995 5.09300 5.15274 5.20211 5.20763 5.30583 5.41166 5.64695 5.71866 5.79766 6.29692 6.41715 7.00953 7.13747 7.84401 8.28005 9.20758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.003045 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.856106 B = 9192.200989 C = 9946.071026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 H 0.099 0.901 4 C 0.532 3.468 5 O -0.564 6.564 6 N -0.611 5.611 7 C 0.113 3.887 8 C -0.139 4.139 9 C 0.167 3.833 10 H 0.086 0.914 11 N -0.600 5.600 12 C 0.180 3.820 13 C -0.262 4.262 14 H 0.079 0.921 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.295 1.295 20 H -0.295 1.295 21 C 0.090 3.910 22 C -0.169 4.169 23 C 0.142 3.858 24 F -0.132 7.132 25 C -0.169 4.169 26 C -0.045 4.045 27 C -0.164 4.164 28 C 0.112 3.888 29 F -0.141 7.141 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.004 0.996 38 H 0.019 0.981 39 H 0.024 0.976 40 H 0.247 0.753 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.165 0.835 44 H 0.187 0.813 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 -16.240 -14.160 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 H 0.118 0.882 4 C 0.321 3.679 5 O -0.443 6.443 6 N -0.344 5.344 7 C -0.009 4.009 8 C -0.179 4.179 9 C 0.058 3.942 10 H 0.104 0.896 11 N -0.321 5.321 12 C 0.036 3.964 13 C -0.392 4.392 14 H 0.097 0.903 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.796 3.204 18 H -0.189 1.189 19 H -0.222 1.222 20 H -0.222 1.222 21 C -0.035 4.035 22 C -0.171 4.171 23 C 0.123 3.877 24 F -0.110 7.110 25 C -0.188 4.188 26 C -0.063 4.063 27 C -0.182 4.182 28 C 0.093 3.907 29 F -0.120 7.120 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.023 0.977 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.183 0.817 44 H 0.204 0.796 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.429 -16.678 -14.221 21.922 hybrid contribution -0.216 1.466 1.030 1.805 sum -0.645 -15.212 -13.191 20.145 Atomic orbital electron populations 1.21760 0.89982 1.03403 1.04205 1.20061 0.99535 0.99887 0.89291 0.88246 1.20289 0.77622 0.86222 0.83772 1.90657 1.51086 1.17086 1.85468 1.48512 1.60164 1.15805 1.09964 1.22236 0.98486 0.96373 0.83786 1.23234 0.99540 0.94304 1.00825 1.21508 0.96102 0.84088 0.92520 0.89581 1.44098 1.32953 1.07221 1.47861 1.20463 0.87865 0.94060 0.94053 1.19632 1.25982 0.87529 1.06022 0.90329 1.25694 1.01570 0.98612 0.98772 1.70260 1.51356 1.11596 1.25112 0.85204 0.76845 0.78896 0.79468 1.18901 1.22189 1.22177 1.22728 0.99269 0.81302 1.00210 1.19535 1.04425 0.95023 0.98152 1.17438 0.92809 0.89051 0.88424 1.91492 1.72030 1.80228 1.67279 1.21590 1.01110 1.02736 0.93317 1.21342 0.93442 0.92411 0.99108 1.21537 1.03241 0.96671 0.96769 1.17564 0.97882 0.78978 0.96321 1.91508 1.90848 1.34702 1.94921 0.91662 0.90913 0.89686 0.91084 0.90152 0.91779 0.88591 0.97732 0.96227 0.95780 0.94335 0.90953 0.92650 0.81739 0.79588 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.86 71.98 0.64 -2.80 16 2 C -0.07 -1.97 2.20 -12.29 -0.03 -1.99 16 3 H 0.10 3.09 6.38 -2.39 -0.02 3.08 16 4 C 0.53 18.09 6.81 87.66 0.60 18.69 16 5 O -0.56 -21.56 13.89 -3.02 -0.04 -21.60 16 6 N -0.61 -20.09 3.33 -811.79 -2.70 -22.79 16 7 C 0.11 3.36 6.89 86.85 0.60 3.96 16 8 C -0.14 -4.38 6.60 31.98 0.21 -4.16 16 9 C 0.17 6.19 3.44 46.18 0.16 6.35 16 10 H 0.09 3.10 7.92 -2.39 -0.02 3.08 16 11 N -0.60 -28.22 2.94 -696.13 -2.05 -30.27 16 12 C 0.18 8.69 7.56 127.77 0.97 9.66 16 13 C -0.26 -13.57 9.64 84.03 0.81 -12.76 16 14 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 15 C -0.05 -2.77 5.07 84.86 0.43 -2.34 16 16 N -0.94 -53.83 10.59 21.65 0.23 -53.60 16 17 Si 0.97 43.73 29.58 68.60 2.03 45.76 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 C 0.09 3.12 5.88 86.73 0.51 3.63 16 22 C -0.17 -4.64 4.63 -19.78 -0.09 -4.73 16 23 C 0.14 3.65 6.17 22.37 0.14 3.79 16 24 F -0.13 -3.93 13.13 44.97 0.59 -3.34 16 25 C -0.17 -2.93 10.03 22.32 0.22 -2.71 16 26 C -0.05 -0.57 10.04 22.26 0.22 -0.35 16 27 C -0.16 -2.71 10.02 22.32 0.22 -2.49 16 28 C 0.11 2.75 7.25 22.37 0.16 2.92 16 29 F -0.14 -3.96 16.19 44.97 0.73 -3.23 16 30 H 0.06 1.69 6.52 -2.39 -0.02 1.68 16 31 H 0.07 1.80 6.76 -2.39 -0.02 1.79 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.11 8.09 -2.39 -0.02 2.09 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.18 6.36 -2.38 -0.02 2.17 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.00 0.23 7.34 -2.39 -0.02 0.22 16 38 H 0.02 1.02 7.14 -2.38 -0.02 1.00 16 39 H 0.02 1.02 6.37 -2.39 -0.02 1.00 16 40 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.07 2.37 6.84 -2.39 -0.02 2.36 16 42 H 0.06 2.15 6.49 -2.39 -0.02 2.14 16 43 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 45 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -67.34 363.01 5.58 -61.76 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.02 Total: 12.66 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.77 Total: 14.65 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -4.52 Total: -106.66 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.04 Total: -21.60 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.32 Total: -6.57 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.34 5.58 -61.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971942095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.539 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds