Wall clock time and date at job start Tue Mar 31 2020 21:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47146 * 2 1 4 4 C 1.50699 * 109.47093 * 239.99441 * 2 1 3 5 5 O 1.21279 * 120.00201 * 252.37198 * 4 2 1 6 6 N 1.34775 * 119.99534 * 72.37910 * 4 2 1 7 7 C 1.47028 * 125.64754 * 185.47710 * 6 4 2 8 8 C 1.54317 * 107.27351 * 181.09355 * 7 6 4 9 9 C 1.55160 * 102.94182 * 22.19123 * 8 7 6 10 10 H 1.09002 * 111.03739 * 82.58783 * 9 8 7 11 11 N 1.46507 * 111.00182 * 206.42496 * 9 8 7 12 12 C 1.46498 * 119.99962 * 52.19914 * 11 9 8 13 13 C 1.36940 * 119.99733 * 232.19368 * 11 9 8 14 14 H 1.07996 * 119.99773 * 344.12019 * 13 11 9 15 15 C 1.38806 * 119.99643 * 164.11875 * 13 11 9 16 16 N 1.31617 * 120.00256 * 320.19236 * 15 13 11 17 17 Si 1.86806 * 119.99917 * 140.19396 * 15 13 11 18 18 H 1.48503 * 109.46968 * 269.99935 * 17 15 13 19 19 H 1.48495 * 109.46842 * 29.99646 * 17 15 13 20 20 H 1.48491 * 109.47263 * 149.99832 * 17 15 13 21 21 C 1.47423 * 125.65334 * 5.51596 * 6 4 2 22 22 C 1.50702 * 109.46738 * 119.99882 * 2 1 3 23 23 C 1.38250 * 119.96711 * 59.72807 * 22 2 1 24 24 C 1.38217 * 120.06869 * 179.72296 * 23 22 2 25 25 C 1.38406 * 120.00118 * 0.54760 * 24 23 22 26 26 F 1.35103 * 120.03675 * 179.74680 * 25 24 23 27 27 C 1.38652 * 119.93023 * 359.72680 * 25 24 23 28 28 F 1.35095 * 120.03610 * 180.02562 * 27 25 24 29 29 C 1.38215 * 119.96112 * 239.99724 * 22 2 1 30 30 H 1.09000 * 109.47422 * 64.21254 * 1 2 3 31 31 H 1.08999 * 109.47476 * 184.21387 * 1 2 3 32 32 H 1.09001 * 109.46991 * 304.21371 * 1 2 3 33 33 H 1.09008 * 109.87946 * 300.51357 * 7 6 4 34 34 H 1.08999 * 109.88019 * 61.66833 * 7 6 4 35 35 H 1.09002 * 110.72052 * 263.82961 * 8 7 6 36 36 H 1.08998 * 110.72334 * 140.55237 * 8 7 6 37 37 H 1.09001 * 109.46904 * 270.85453 * 12 11 9 38 38 H 1.08995 * 109.47509 * 30.85627 * 12 11 9 39 39 H 1.08998 * 109.46837 * 150.86146 * 12 11 9 40 40 H 0.96999 * 119.99717 * 2.87099 * 16 15 13 41 41 H 1.09002 * 110.36816 * 36.99295 * 21 6 4 42 42 H 1.09007 * 110.36293 * 274.67586 * 21 6 4 43 43 H 1.08006 * 119.96734 * 359.97438 * 23 22 2 44 44 H 1.08003 * 119.99909 * 180.26931 * 24 23 22 45 45 H 1.07999 * 120.00253 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5343 -1.8102 -1.1331 6 7 1.9238 -0.1237 -2.4388 7 6 2.2653 -0.7450 -3.7269 8 6 2.0066 0.3069 -4.8259 9 6 2.0719 1.6470 -4.0466 10 1 3.1034 1.9753 -3.9186 11 7 1.2735 2.6802 -4.7110 12 6 -0.1244 2.4144 -5.0596 13 6 1.8339 3.8943 -5.0060 14 1 2.7595 4.1905 -4.5351 15 6 1.2121 4.7443 -5.9103 16 7 0.6527 4.2544 -6.9963 17 14 1.1693 6.5835 -5.5859 18 1 -0.0509 6.9209 -4.8097 19 1 2.3734 6.9776 -4.8114 20 1 1.1513 7.3138 -6.8787 21 6 1.4437 1.2477 -2.6881 22 6 2.0322 -0.7104 1.2305 23 6 1.6932 -2.0323 1.4515 24 6 2.1573 -2.6876 2.5764 25 6 2.9532 -2.0171 3.4889 26 9 3.4031 -2.6554 4.5914 27 6 3.2886 -0.6896 3.2702 28 9 4.0657 -0.0332 4.1592 29 6 2.8268 -0.0380 2.1398 30 1 -0.3634 0.4471 -0.9253 31 1 -0.3634 -1.0249 0.0755 32 1 -0.3633 0.5778 0.8498 33 1 3.3161 -1.0352 -3.7314 34 1 1.6365 -1.6193 -3.8950 35 1 1.0210 0.1665 -5.2697 36 1 2.7837 0.2664 -5.5891 37 1 -0.1731 1.9749 -6.0558 38 1 -0.5542 1.7222 -4.3356 39 1 -0.6859 3.3486 -5.0468 40 1 0.6383 3.2959 -7.1443 41 1 1.7858 1.9185 -1.9001 42 1 0.3557 1.2625 -2.7543 43 1 1.0682 -2.5548 0.7422 44 1 1.8953 -3.7216 2.7457 45 1 3.0871 0.9961 1.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980446569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:15 Heat of formation + Delta-G solvation = -72.930426 kcal Electronic energy + Delta-G solvation = -29311.229797 eV Core-core repulsion = 24965.495907 eV Total energy + Delta-G solvation = -4345.733891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.67183 -48.74906 -40.59178 -39.08950 -37.55483 -35.10800 -34.27407 -31.75360 -31.18351 -30.23014 -29.05539 -27.95654 -26.27597 -25.22882 -23.61849 -23.53705 -22.61219 -21.42194 -19.61455 -19.19134 -18.15511 -17.69782 -17.63570 -17.12972 -16.71722 -16.50528 -16.03772 -15.43263 -15.16542 -15.08992 -14.69625 -14.51946 -14.22303 -14.02310 -13.69310 -13.55775 -13.33412 -13.27179 -13.15059 -12.96285 -12.60966 -12.57463 -12.10132 -12.06990 -11.87296 -11.68300 -11.42439 -11.28588 -11.07033 -10.86869 -10.83950 -10.60214 -10.26626 -10.10560 -9.84585 -9.73730 -9.29432 -8.86443 -8.57241 -8.27886 -7.12871 -6.37254 -3.22886 0.63164 0.75442 2.59163 2.87915 3.22427 3.44589 3.46209 3.53313 3.63570 4.03337 4.16261 4.27651 4.40434 4.54963 4.74032 4.78064 4.85047 4.95540 4.97368 5.03346 5.20309 5.30236 5.34620 5.43849 5.47604 5.49622 5.53119 5.58745 5.65622 5.69896 5.75103 5.81325 5.93241 5.99219 6.11498 6.16415 6.30674 6.34896 6.44662 6.48430 6.64110 6.73487 6.93972 7.58166 7.85657 8.14398 8.42172 8.92638 9.72692 10.09019 11.01092 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.002485 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.106726 B =11263.640087 C =12131.180716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 H 0.108 0.892 4 C 0.533 3.467 5 O -0.543 6.543 6 N -0.609 5.609 7 C 0.112 3.888 8 C -0.155 4.155 9 C 0.176 3.824 10 H 0.081 0.919 11 N -0.586 5.586 12 C 0.131 3.869 13 C -0.383 4.383 14 H 0.065 0.935 15 C -0.013 4.013 16 N -0.894 5.894 17 Si 1.060 2.940 18 H -0.292 1.292 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.075 3.925 22 C -0.048 4.048 23 C -0.060 4.060 24 C -0.128 4.128 25 C 0.065 3.935 26 F -0.132 7.132 27 C 0.063 3.937 28 F -0.130 7.130 29 C -0.118 4.118 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.011 0.989 38 H 0.020 0.980 39 H 0.053 0.947 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -11.150 16.311 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 H 0.126 0.874 4 C 0.320 3.680 5 O -0.421 6.421 6 N -0.343 5.343 7 C -0.010 4.010 8 C -0.195 4.195 9 C 0.065 3.935 10 H 0.099 0.901 11 N -0.307 5.307 12 C -0.014 4.014 13 C -0.511 4.511 14 H 0.083 0.917 15 C -0.218 4.218 16 N -0.532 5.532 17 Si 0.890 3.110 18 H -0.220 1.220 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.050 4.050 22 C -0.049 4.049 23 C -0.078 4.078 24 C -0.147 4.147 25 C 0.045 3.955 26 F -0.110 7.110 27 C 0.043 3.957 28 F -0.109 7.109 29 C -0.136 4.136 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.029 0.971 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.889 -10.251 15.843 18.891 hybrid contribution 0.810 -1.451 0.894 1.887 sum -0.079 -11.702 16.737 20.423 Atomic orbital electron populations 1.21797 0.91147 1.03206 1.03688 1.20253 0.98363 1.00440 0.89971 0.87432 1.19939 0.78879 0.85880 0.83275 1.90695 1.44839 1.20846 1.85737 1.48437 1.64181 1.16033 1.05609 1.21914 1.00366 0.96269 0.82487 1.23260 1.02766 0.96205 0.97247 1.21366 0.95324 0.87686 0.89123 0.90125 1.43934 1.06652 1.12155 1.67967 1.20965 0.85191 0.99083 0.96206 1.19874 1.11330 0.92441 1.27439 0.91706 1.25694 0.99246 1.05457 0.91370 1.70844 1.47554 1.15666 1.19103 0.83559 0.76089 0.75553 0.75754 1.21975 1.21746 1.21787 1.23150 0.99798 0.80933 1.01076 1.19275 0.96768 0.94223 0.94626 1.20929 0.98125 0.93465 0.95315 1.21062 0.98370 1.01215 0.94026 1.17711 1.01029 0.90016 0.86767 1.91519 1.87563 1.81424 1.50509 1.17551 0.97434 0.89802 0.90887 1.91525 1.72261 1.80537 1.66558 1.20964 0.98602 1.01398 0.92667 0.90900 0.91729 0.90891 0.91757 0.92071 0.90779 0.90470 0.97111 0.96101 0.92866 0.91764 0.90916 0.91053 0.84161 0.83667 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.00 37.16 0.33 -0.88 16 2 C -0.07 -0.72 2.29 -92.92 -0.21 -0.93 16 3 H 0.11 1.01 6.93 -51.93 -0.36 0.65 16 4 C 0.53 7.26 7.00 -10.99 -0.08 7.18 16 5 O -0.54 -8.84 15.08 5.56 0.08 -8.76 16 6 N -0.61 -8.50 3.33 -170.52 -0.57 -9.06 16 7 C 0.11 1.59 6.87 -3.06 -0.02 1.56 16 8 C -0.15 -2.42 6.50 -24.90 -0.16 -2.58 16 9 C 0.18 3.13 3.54 -65.78 -0.23 2.90 16 10 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 11 N -0.59 -12.92 2.91 -171.03 -0.50 -13.42 16 12 C 0.13 2.74 7.69 59.85 0.46 3.20 16 13 C -0.38 -9.80 9.41 -15.06 -0.14 -9.94 16 14 H 0.07 1.69 8.00 -52.49 -0.42 1.27 16 15 C -0.01 -0.34 4.35 -17.43 -0.08 -0.42 16 16 N -0.89 -25.15 12.90 55.49 0.72 -24.43 16 17 Si 1.06 23.80 30.05 -169.99 -5.11 18.69 16 18 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.08 1.09 5.50 -2.53 -0.01 1.08 16 22 C -0.05 -0.51 4.52 -104.62 -0.47 -0.98 16 23 C -0.06 -0.61 7.79 -39.58 -0.31 -0.92 16 24 C -0.13 -1.24 10.02 -39.53 -0.40 -1.63 16 25 C 0.06 0.72 7.31 -39.37 -0.29 0.44 16 26 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 27 C 0.06 0.72 7.31 -39.36 -0.29 0.43 16 28 F -0.13 -1.59 17.18 2.25 0.04 -1.56 16 29 C -0.12 -1.20 9.65 -39.53 -0.38 -1.58 16 30 H 0.07 0.67 6.61 -51.93 -0.34 0.33 16 31 H 0.06 0.53 7.23 -51.93 -0.38 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.20 6.99 -51.93 -0.36 0.84 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.24 6.89 -51.93 -0.36 -0.12 16 38 H 0.02 0.36 6.39 -51.93 -0.33 0.03 16 39 H 0.05 1.23 7.15 -51.93 -0.37 0.86 16 40 H 0.27 7.64 6.53 -40.82 -0.27 7.37 16 41 H 0.07 0.99 7.16 -51.93 -0.37 0.61 16 42 H 0.07 1.03 5.61 -51.93 -0.29 0.74 16 43 H 0.14 1.35 7.18 -52.48 -0.38 0.98 16 44 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.15 1.23 7.94 -52.49 -0.42 0.81 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -29.66 367.87 -8.00 -37.66 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.97 Total: -0.06 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.28 Total: -3.08 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.35 Total: -46.91 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.11 Total: 18.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.66 -8.00 -37.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980446569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.273 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds