Wall clock time and date at job start Tue Mar 31 2020 21:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47146 * 2 1 4 4 C 1.50699 * 109.47093 * 239.99441 * 2 1 3 5 5 O 1.21279 * 120.00201 * 252.37198 * 4 2 1 6 6 N 1.34775 * 119.99534 * 72.37910 * 4 2 1 7 7 C 1.47028 * 125.64754 * 185.47710 * 6 4 2 8 8 C 1.54317 * 107.27351 * 181.09355 * 7 6 4 9 9 C 1.55160 * 102.94182 * 22.19123 * 8 7 6 10 10 H 1.09002 * 111.03739 * 82.58783 * 9 8 7 11 11 N 1.46507 * 111.00182 * 206.42496 * 9 8 7 12 12 C 1.46498 * 119.99962 * 52.19914 * 11 9 8 13 13 C 1.36940 * 119.99733 * 232.19368 * 11 9 8 14 14 H 1.07996 * 119.99773 * 344.12019 * 13 11 9 15 15 C 1.38806 * 119.99643 * 164.11875 * 13 11 9 16 16 N 1.31617 * 120.00256 * 320.19236 * 15 13 11 17 17 Si 1.86806 * 119.99917 * 140.19396 * 15 13 11 18 18 H 1.48503 * 109.46968 * 269.99935 * 17 15 13 19 19 H 1.48495 * 109.46842 * 29.99646 * 17 15 13 20 20 H 1.48491 * 109.47263 * 149.99832 * 17 15 13 21 21 C 1.47423 * 125.65334 * 5.51596 * 6 4 2 22 22 C 1.50702 * 109.46738 * 119.99882 * 2 1 3 23 23 C 1.38250 * 119.96711 * 59.72807 * 22 2 1 24 24 C 1.38217 * 120.06869 * 179.72296 * 23 22 2 25 25 C 1.38406 * 120.00118 * 0.54760 * 24 23 22 26 26 F 1.35103 * 120.03675 * 179.74680 * 25 24 23 27 27 C 1.38652 * 119.93023 * 359.72680 * 25 24 23 28 28 F 1.35095 * 120.03610 * 180.02562 * 27 25 24 29 29 C 1.38215 * 119.96112 * 239.99724 * 22 2 1 30 30 H 1.09000 * 109.47422 * 64.21254 * 1 2 3 31 31 H 1.08999 * 109.47476 * 184.21387 * 1 2 3 32 32 H 1.09001 * 109.46991 * 304.21371 * 1 2 3 33 33 H 1.09008 * 109.87946 * 300.51357 * 7 6 4 34 34 H 1.08999 * 109.88019 * 61.66833 * 7 6 4 35 35 H 1.09002 * 110.72052 * 263.82961 * 8 7 6 36 36 H 1.08998 * 110.72334 * 140.55237 * 8 7 6 37 37 H 1.09001 * 109.46904 * 270.85453 * 12 11 9 38 38 H 1.08995 * 109.47509 * 30.85627 * 12 11 9 39 39 H 1.08998 * 109.46837 * 150.86146 * 12 11 9 40 40 H 0.96999 * 119.99717 * 2.87099 * 16 15 13 41 41 H 1.09002 * 110.36816 * 36.99295 * 21 6 4 42 42 H 1.09007 * 110.36293 * 274.67586 * 21 6 4 43 43 H 1.08006 * 119.96734 * 359.97438 * 23 22 2 44 44 H 1.08003 * 119.99909 * 180.26931 * 24 23 22 45 45 H 1.07999 * 120.00253 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5343 -1.8102 -1.1331 6 7 1.9238 -0.1237 -2.4388 7 6 2.2653 -0.7450 -3.7269 8 6 2.0066 0.3069 -4.8259 9 6 2.0719 1.6470 -4.0466 10 1 3.1034 1.9753 -3.9186 11 7 1.2735 2.6802 -4.7110 12 6 -0.1244 2.4144 -5.0596 13 6 1.8339 3.8943 -5.0060 14 1 2.7595 4.1905 -4.5351 15 6 1.2121 4.7443 -5.9103 16 7 0.6527 4.2544 -6.9963 17 14 1.1693 6.5835 -5.5859 18 1 -0.0509 6.9209 -4.8097 19 1 2.3734 6.9776 -4.8114 20 1 1.1513 7.3138 -6.8787 21 6 1.4437 1.2477 -2.6881 22 6 2.0322 -0.7104 1.2305 23 6 1.6932 -2.0323 1.4515 24 6 2.1573 -2.6876 2.5764 25 6 2.9532 -2.0171 3.4889 26 9 3.4031 -2.6554 4.5914 27 6 3.2886 -0.6896 3.2702 28 9 4.0657 -0.0332 4.1592 29 6 2.8268 -0.0380 2.1398 30 1 -0.3634 0.4471 -0.9253 31 1 -0.3634 -1.0249 0.0755 32 1 -0.3633 0.5778 0.8498 33 1 3.3161 -1.0352 -3.7314 34 1 1.6365 -1.6193 -3.8950 35 1 1.0210 0.1665 -5.2697 36 1 2.7837 0.2664 -5.5891 37 1 -0.1731 1.9749 -6.0558 38 1 -0.5542 1.7222 -4.3356 39 1 -0.6859 3.3486 -5.0468 40 1 0.6383 3.2959 -7.1443 41 1 1.7858 1.9185 -1.9001 42 1 0.3557 1.2625 -2.7543 43 1 1.0682 -2.5548 0.7422 44 1 1.8953 -3.7216 2.7457 45 1 3.0871 0.9961 1.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980446569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:14 Heat of formation + Delta-G solvation = -87.724623 kcal Electronic energy + Delta-G solvation = -29311.871322 eV Core-core repulsion = 24965.495907 eV Total energy + Delta-G solvation = -4346.375415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.54741 -49.63159 -41.60965 -40.08723 -38.81789 -36.71912 -35.13830 -33.39520 -31.97159 -31.53944 -29.93267 -29.31866 -28.06723 -26.14384 -24.91667 -24.32539 -23.98489 -22.44996 -21.11726 -20.23344 -19.49209 -19.00154 -18.58623 -18.01930 -17.71673 -17.41742 -17.35442 -16.47510 -16.06851 -16.03819 -15.85956 -15.65848 -15.49407 -15.40429 -14.98617 -14.84499 -14.74278 -14.32270 -14.13851 -13.96534 -13.82157 -13.59086 -13.24147 -13.05864 -12.91698 -12.66635 -12.62538 -12.53517 -12.44755 -12.37258 -12.27721 -12.03422 -11.86225 -11.76314 -11.45953 -10.88759 -10.26122 -10.09060 -9.71242 -9.69386 -8.95321 -8.40695 -5.21655 -0.18974 -0.02170 1.53887 1.64484 1.68309 1.85390 1.87671 2.35838 2.66575 2.73199 3.13483 3.20303 3.31049 3.36360 3.54169 3.71670 3.82388 3.90601 3.98468 4.03058 4.10440 4.13190 4.23073 4.28681 4.35438 4.58722 4.64746 4.69843 4.74355 4.77424 4.79107 4.82768 4.90768 4.92453 4.97408 5.00841 5.11787 5.17642 5.19786 5.26870 5.32642 5.36067 5.68638 5.89512 6.39595 6.47686 7.02437 7.07168 7.82965 8.19765 8.97497 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.002485 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.106726 B =11263.640087 C =12131.180716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 H 0.122 0.878 4 C 0.532 3.468 5 O -0.570 6.570 6 N -0.610 5.610 7 C 0.119 3.881 8 C -0.144 4.144 9 C 0.165 3.835 10 H 0.067 0.933 11 N -0.600 5.600 12 C 0.143 3.857 13 C -0.377 4.377 14 H 0.057 0.943 15 C -0.064 4.064 16 N -0.926 5.926 17 Si 1.106 2.894 18 H -0.283 1.283 19 H -0.275 1.275 20 H -0.301 1.301 21 C 0.093 3.907 22 C -0.054 4.054 23 C -0.063 4.063 24 C -0.122 4.122 25 C 0.051 3.949 26 F -0.139 7.139 27 C 0.048 3.952 28 F -0.139 7.139 29 C -0.115 4.115 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H -0.006 1.006 38 H 0.057 0.943 39 H 0.026 0.974 40 H 0.258 0.742 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.168 0.832 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -11.392 17.866 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 H 0.140 0.860 4 C 0.322 3.678 5 O -0.450 6.450 6 N -0.343 5.343 7 C -0.004 4.004 8 C -0.184 4.184 9 C 0.056 3.944 10 H 0.085 0.915 11 N -0.323 5.323 12 C -0.002 4.002 13 C -0.506 4.506 14 H 0.075 0.925 15 C -0.263 4.263 16 N -0.567 5.567 17 Si 0.933 3.067 18 H -0.209 1.209 19 H -0.200 1.200 20 H -0.228 1.228 21 C -0.031 4.031 22 C -0.055 4.055 23 C -0.081 4.081 24 C -0.141 4.141 25 C 0.031 3.969 26 F -0.118 7.118 27 C 0.028 3.972 28 F -0.118 7.118 29 C -0.134 4.134 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.164 0.836 44 H 0.185 0.815 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.415 -10.522 17.439 20.416 hybrid contribution 1.044 -1.483 0.431 1.864 sum -0.371 -12.005 17.870 21.531 Atomic orbital electron populations 1.21817 0.89590 1.03840 1.04318 1.20280 0.99506 1.00555 0.88039 0.86007 1.20498 0.78027 0.85598 0.83700 1.90689 1.46016 1.22181 1.86079 1.48451 1.64315 1.15711 1.05799 1.21818 1.00608 0.95915 0.82096 1.23092 1.02410 0.95452 0.97450 1.21516 0.94465 0.87557 0.90887 0.91499 1.44055 1.07418 1.12452 1.68336 1.20807 0.84636 0.98377 0.96395 1.20053 1.10801 0.93838 1.25891 0.92518 1.26820 0.99503 1.08796 0.91177 1.70965 1.50279 1.14778 1.20673 0.82936 0.77008 0.71482 0.75308 1.20925 1.19991 1.22838 1.22860 0.99792 0.81370 0.99109 1.19366 0.96916 0.94474 0.94704 1.21084 0.98063 0.93533 0.95431 1.21280 0.97388 1.02147 0.93277 1.17944 1.01698 0.90213 0.87008 1.91497 1.87766 1.81559 1.50976 1.17773 0.97992 0.90117 0.91365 1.91498 1.72623 1.80733 1.66956 1.21124 0.98008 1.02192 0.92028 0.91215 0.91385 0.89075 0.91828 0.91043 0.91114 0.91050 0.98798 0.92432 0.95481 0.93172 0.89444 0.90343 0.83573 0.81495 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.00 71.98 0.65 -1.27 16 2 C -0.06 -1.11 2.29 -12.29 -0.03 -1.14 16 3 H 0.12 1.83 6.93 -2.39 -0.02 1.81 16 4 C 0.53 13.12 7.00 87.66 0.61 13.74 16 5 O -0.57 -17.35 15.08 -3.03 -0.05 -17.39 16 6 N -0.61 -15.47 3.33 -811.79 -2.70 -18.17 16 7 C 0.12 3.12 6.87 86.73 0.60 3.72 16 8 C -0.14 -4.36 6.50 31.78 0.21 -4.15 16 9 C 0.16 5.67 3.54 46.38 0.16 5.83 16 10 H 0.07 2.47 7.92 -2.39 -0.02 2.45 16 11 N -0.60 -26.13 2.91 -695.03 -2.02 -28.15 16 12 C 0.14 5.92 7.69 127.77 0.98 6.90 16 13 C -0.38 -19.22 9.41 84.03 0.79 -18.43 16 14 H 0.06 2.94 8.00 -2.91 -0.02 2.91 16 15 C -0.06 -3.39 4.35 84.86 0.37 -3.02 16 16 N -0.93 -53.06 12.90 21.65 0.28 -52.79 16 17 Si 1.11 47.93 30.05 68.60 2.06 49.99 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 21 C 0.09 2.46 5.50 86.85 0.48 2.93 16 22 C -0.05 -0.99 4.52 -19.87 -0.09 -1.08 16 23 C -0.06 -1.14 7.79 22.27 0.17 -0.96 16 24 C -0.12 -2.13 10.02 22.30 0.22 -1.90 16 25 C 0.05 1.09 7.31 22.41 0.16 1.25 16 26 F -0.14 -3.20 17.18 44.97 0.77 -2.43 16 27 C 0.05 1.03 7.31 22.41 0.16 1.19 16 28 F -0.14 -3.31 17.18 44.97 0.77 -2.54 16 29 C -0.11 -2.11 9.65 22.31 0.22 -1.90 16 30 H 0.07 1.04 6.61 -2.39 -0.02 1.02 16 31 H 0.07 0.91 7.23 -2.39 -0.02 0.89 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.21 6.99 -2.39 -0.02 2.19 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H -0.01 -0.27 6.89 -2.39 -0.02 -0.29 16 38 H 0.06 1.91 6.39 -2.39 -0.02 1.90 16 39 H 0.03 1.24 7.15 -2.39 -0.02 1.22 16 40 H 0.26 14.95 6.53 -92.71 -0.61 14.35 16 41 H 0.09 2.08 7.16 -2.39 -0.02 2.06 16 42 H 0.08 2.00 5.61 -2.38 -0.01 1.99 16 43 H 0.15 2.46 7.18 -2.91 -0.02 2.44 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.16 2.33 7.94 -2.91 -0.02 2.30 16 Total: -1.00 -63.93 367.87 5.97 -57.95 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.18 Total: 11.83 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.67 Total: 1.70 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.44 Total: -99.11 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.55 Total: -4.97 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.06 Total: 49.99 kcal Total: -63.93 5.97 -57.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980446569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.771 kcal (2) G-P(sol) polarization free energy of solvation -63.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds