Wall clock time and date at job start Tue Mar 31 2020 21:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 C 1.50697 * 109.46966 * 240.00214 * 2 1 3 5 5 O 1.21280 * 119.99987 * 248.70956 * 4 2 1 6 6 N 1.34779 * 120.00314 * 68.71103 * 4 2 1 7 7 C 1.47025 * 125.64592 * 4.09598 * 6 4 2 8 8 C 1.54340 * 107.26379 * 178.85350 * 7 6 4 9 9 C 1.55156 * 103.01974 * 338.13846 * 8 7 6 10 10 H 1.08992 * 111.01023 * 277.23437 * 9 8 7 11 11 N 1.46502 * 110.99930 * 153.37954 * 9 8 7 12 12 C 1.46498 * 120.00458 * 307.80867 * 11 9 8 13 13 C 1.36945 * 119.99579 * 127.80798 * 11 9 8 14 14 H 1.08002 * 119.99702 * 23.82292 * 13 11 9 15 15 C 1.38801 * 119.99759 * 203.82521 * 13 11 9 16 16 N 1.31621 * 120.00474 * 12.62064 * 15 13 11 17 17 Si 1.86800 * 119.99950 * 192.61968 * 15 13 11 18 18 H 1.48497 * 109.47287 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47468 * 120.00016 * 17 15 13 20 20 H 1.48499 * 109.47289 * 239.99926 * 17 15 13 21 21 C 1.47421 * 125.65081 * 184.40975 * 6 4 2 22 22 C 1.50699 * 109.47306 * 120.00148 * 2 1 3 23 23 C 1.38225 * 119.98699 * 59.99857 * 22 2 1 24 24 C 1.38183 * 120.05253 * 180.02562 * 23 22 2 25 25 C 1.38495 * 120.02440 * 359.97263 * 24 23 22 26 26 F 1.35096 * 120.01614 * 180.02562 * 25 24 23 27 27 C 1.38401 * 119.97532 * 0.02825 * 25 24 23 28 28 C 1.38441 * 119.94507 * 0.27369 * 27 25 24 29 29 F 1.35106 * 120.01355 * 179.70271 * 28 27 25 30 30 H 1.09000 * 109.47042 * 307.79242 * 1 2 3 31 31 H 1.08997 * 109.47258 * 67.78890 * 1 2 3 32 32 H 1.09001 * 109.47096 * 187.79200 * 1 2 3 33 33 H 1.09003 * 109.88281 * 298.39531 * 7 6 4 34 34 H 1.08994 * 109.88173 * 59.56639 * 7 6 4 35 35 H 1.08997 * 110.84404 * 219.67530 * 8 7 6 36 36 H 1.08994 * 110.66446 * 96.52538 * 8 7 6 37 37 H 1.08997 * 109.47057 * 89.14581 * 12 11 9 38 38 H 1.08997 * 109.46850 * 209.14898 * 12 11 9 39 39 H 1.09000 * 109.47043 * 329.14396 * 12 11 9 40 40 H 0.97000 * 120.00315 * 180.02562 * 16 15 13 41 41 H 1.09004 * 110.36797 * 322.92964 * 21 6 4 42 42 H 1.09002 * 110.36876 * 85.13824 * 21 6 4 43 43 H 1.08004 * 119.97897 * 0.02562 * 23 22 2 44 44 H 1.07999 * 119.99336 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.03162 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5940 -1.7802 -1.1262 6 7 1.8574 -0.1568 -2.4468 7 6 1.2732 1.1665 -2.7100 8 6 1.3026 1.3845 -4.2377 9 6 2.4115 0.4070 -4.7090 10 1 3.3999 0.8505 -4.5895 11 7 2.1893 -0.0096 -6.0958 12 6 0.8900 -0.5539 -6.4981 13 6 3.1963 0.1097 -7.0163 14 1 4.2257 0.1327 -6.6904 15 6 2.8938 0.2012 -8.3678 16 7 1.6544 0.4229 -8.7514 17 14 4.2458 0.0095 -9.6425 18 1 5.5415 -0.2301 -8.9577 19 1 3.9327 -1.1415 -10.5272 20 1 4.3382 1.2483 -10.4562 21 6 2.2142 -0.7805 -3.7341 22 6 2.0324 -0.7104 1.2304 23 6 1.6983 -2.0338 1.4489 24 6 2.1578 -2.6864 2.5769 25 6 2.9542 -2.0151 3.4897 26 9 3.4037 -2.6534 4.5923 27 6 3.2893 -0.6901 3.2721 28 6 2.8232 -0.0355 2.1447 29 9 3.1446 1.2597 1.9339 30 1 -0.3633 0.6298 0.8121 31 1 -0.3633 0.3885 -0.9514 32 1 -0.3633 -1.0182 0.1393 33 1 0.2451 1.1963 -2.3491 34 1 1.8643 1.9375 -2.2160 35 1 1.5686 2.4140 -4.4775 36 1 0.3426 1.1221 -4.6822 37 1 0.2380 0.2596 -6.8159 38 1 1.0285 -1.2523 -7.3234 39 1 0.4370 -1.0741 -5.6541 40 1 1.4430 0.4865 -9.6959 41 1 3.1390 -1.3492 -3.6367 42 1 1.4070 -1.4268 -4.0791 43 1 1.0776 -2.5582 0.7374 44 1 1.8965 -3.7205 2.7464 45 1 3.9107 -0.1659 3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980447182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:23 Heat of formation + Delta-G solvation = -69.763976 kcal Electronic energy + Delta-G solvation = -29373.162877 eV Core-core repulsion = 25027.566294 eV Total energy + Delta-G solvation = -4345.596583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.29058 -49.26332 -40.42755 -38.96142 -37.40716 -34.91599 -34.27358 -31.67231 -31.07418 -29.88890 -29.40632 -27.82905 -26.09996 -25.23843 -23.78205 -23.30001 -22.41045 -21.71670 -19.37181 -19.06239 -18.51600 -17.73491 -17.10010 -16.69321 -16.35412 -16.21888 -15.91620 -15.74967 -15.55272 -14.85395 -14.78535 -14.66889 -14.44953 -14.09553 -13.71433 -13.40301 -13.12169 -13.03412 -12.95381 -12.55543 -12.49806 -12.43367 -12.11898 -12.02574 -11.91034 -11.45853 -11.42358 -11.32695 -10.98751 -10.82399 -10.54691 -10.50799 -10.25299 -9.95303 -9.88689 -9.67560 -9.30753 -8.88643 -8.62425 -8.40045 -6.84285 -5.82662 -3.28930 0.64246 0.76570 2.68712 2.94213 3.25931 3.33869 3.41991 3.44090 3.57785 4.07189 4.18787 4.26914 4.42800 4.49816 4.61887 4.82222 4.87991 4.97897 4.98910 5.12918 5.28032 5.37419 5.46543 5.50339 5.51404 5.57921 5.59543 5.64349 5.66459 5.78225 5.84133 5.92559 6.00294 6.01760 6.24966 6.33645 6.46408 6.49610 6.59309 6.74310 6.83256 7.29226 7.61309 7.70440 7.74656 8.24328 8.32162 9.14399 9.76205 10.24981 11.23435 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.002338 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.850981 B =11973.232268 C =12224.399895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 H 0.107 0.893 4 C 0.531 3.469 5 O -0.540 6.540 6 N -0.609 5.609 7 C 0.097 3.903 8 C -0.151 4.151 9 C 0.173 3.827 10 H 0.078 0.922 11 N -0.585 5.585 12 C 0.160 3.840 13 C -0.260 4.260 14 H 0.070 0.930 15 C 0.005 3.995 16 N -0.905 5.905 17 Si 0.906 3.094 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.085 3.915 22 C -0.109 4.109 23 C -0.024 4.024 24 C -0.164 4.164 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.195 4.195 28 C 0.136 3.864 29 F -0.129 7.129 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.052 0.948 39 H -0.001 1.001 40 H 0.253 0.747 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -0.119 22.874 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 H 0.125 0.875 4 C 0.319 3.681 5 O -0.417 6.417 6 N -0.342 5.342 7 C -0.026 4.026 8 C -0.191 4.191 9 C 0.062 3.938 10 H 0.096 0.904 11 N -0.305 5.305 12 C 0.016 3.984 13 C -0.389 4.389 14 H 0.088 0.912 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.736 3.264 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.217 1.217 21 C -0.039 4.039 22 C -0.110 4.110 23 C -0.042 4.042 24 C -0.183 4.183 25 C 0.108 3.892 26 F -0.112 7.112 27 C -0.215 4.215 28 C 0.116 3.884 29 F -0.108 7.108 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.741 -0.690 22.799 23.114 hybrid contribution 0.821 0.196 -0.617 1.045 sum -2.920 -0.494 22.182 22.379 Atomic orbital electron populations 1.21873 0.91305 1.03344 1.03534 1.20155 0.98280 1.00576 0.90101 0.87482 1.19886 0.79448 0.85603 0.83188 1.90704 1.42801 1.22391 1.85816 1.48426 1.61095 1.18864 1.05850 1.22214 0.97702 0.84183 0.98480 1.23203 1.02441 1.01845 0.91634 1.21410 0.96717 0.90489 0.85148 0.90390 1.43819 1.12188 1.71195 1.03288 1.20788 0.85974 0.96579 0.95082 1.19267 0.87368 1.45509 0.86796 0.91227 1.25040 0.96484 1.00104 0.97741 1.70072 1.17407 1.52476 1.14964 0.86162 0.81319 0.77369 0.81548 1.20217 1.21527 1.21666 1.23031 1.00807 0.98293 0.81812 1.19467 1.00360 0.95364 0.95846 1.20728 0.96352 0.92269 0.94812 1.21198 1.00532 1.01606 0.94958 1.17300 0.96945 0.90277 0.84686 1.91524 1.87390 1.81563 1.50732 1.20921 1.06083 0.94654 0.99848 1.17075 0.97415 0.79039 0.94853 1.91517 1.90964 1.33646 1.94644 0.91114 0.90719 0.91599 0.91602 0.91761 0.90438 0.90442 0.95684 0.92898 0.98301 0.93665 0.90929 0.91325 0.83844 0.83948 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.04 37.16 0.34 -0.87 16 2 C -0.07 -0.76 2.28 -92.93 -0.21 -0.97 16 3 H 0.11 1.09 6.97 -51.93 -0.36 0.73 16 4 C 0.53 7.80 7.02 -10.99 -0.08 7.72 16 5 O -0.54 -9.65 15.05 5.56 0.08 -9.56 16 6 N -0.61 -9.07 3.32 -170.51 -0.57 -9.63 16 7 C 0.10 1.22 6.13 -3.05 -0.02 1.20 16 8 C -0.15 -2.38 6.50 -24.89 -0.16 -2.54 16 9 C 0.17 3.32 3.55 -65.78 -0.23 3.09 16 10 H 0.08 1.54 7.96 -51.93 -0.41 1.12 16 11 N -0.58 -13.86 2.96 -171.04 -0.51 -14.37 16 12 C 0.16 3.72 7.63 59.85 0.46 4.18 16 13 C -0.26 -6.88 9.60 -15.06 -0.14 -7.03 16 14 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 15 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 16 N -0.90 -25.43 10.78 55.49 0.60 -24.83 16 17 Si 0.91 21.34 29.57 -169.99 -5.03 16.32 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.08 1.50 6.50 -2.53 -0.02 1.49 16 22 C -0.11 -1.21 4.49 -104.55 -0.47 -1.68 16 23 C -0.02 -0.25 7.75 -39.61 -0.31 -0.55 16 24 C -0.16 -1.55 10.02 -39.51 -0.40 -1.95 16 25 C 0.13 1.27 7.30 -39.43 -0.29 0.98 16 26 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 27 C -0.20 -1.92 10.01 -39.45 -0.39 -2.31 16 28 C 0.14 1.48 7.24 -39.43 -0.29 1.19 16 29 F -0.13 -1.44 16.19 2.25 0.04 -1.40 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.62 5.49 -51.93 -0.29 0.34 16 32 H 0.06 0.54 7.14 -51.93 -0.37 0.17 16 33 H 0.07 0.68 5.89 -51.93 -0.31 0.37 16 34 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.29 6.99 -51.93 -0.36 0.93 16 37 H 0.02 0.62 7.58 -51.93 -0.39 0.22 16 38 H 0.05 1.35 6.98 -51.93 -0.36 0.99 16 39 H 0.00 -0.03 6.39 -51.93 -0.33 -0.36 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.07 1.39 8.00 -51.93 -0.42 0.98 16 42 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 43 H 0.14 1.43 7.27 -52.48 -0.38 1.05 16 44 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.17 366.29 -8.10 -38.27 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.98 Total: -0.97 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.30 Total: 1.99 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.47 Total: -48.84 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.17 -8.10 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980447182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.498 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds