Wall clock time and date at job start Tue Mar 31 2020 21:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 C 1.50697 * 109.46966 * 240.00214 * 2 1 3 5 5 O 1.21280 * 119.99987 * 248.70956 * 4 2 1 6 6 N 1.34779 * 120.00314 * 68.71103 * 4 2 1 7 7 C 1.47025 * 125.64592 * 4.09598 * 6 4 2 8 8 C 1.54340 * 107.26379 * 178.85350 * 7 6 4 9 9 C 1.55156 * 103.01974 * 338.13846 * 8 7 6 10 10 H 1.08992 * 111.01023 * 277.23437 * 9 8 7 11 11 N 1.46502 * 110.99930 * 153.37954 * 9 8 7 12 12 C 1.46498 * 120.00458 * 307.80867 * 11 9 8 13 13 C 1.36945 * 119.99579 * 127.80798 * 11 9 8 14 14 H 1.08002 * 119.99702 * 23.82292 * 13 11 9 15 15 C 1.38801 * 119.99759 * 203.82521 * 13 11 9 16 16 N 1.31621 * 120.00474 * 12.62064 * 15 13 11 17 17 Si 1.86800 * 119.99950 * 192.61968 * 15 13 11 18 18 H 1.48497 * 109.47287 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47468 * 120.00016 * 17 15 13 20 20 H 1.48499 * 109.47289 * 239.99926 * 17 15 13 21 21 C 1.47421 * 125.65081 * 184.40975 * 6 4 2 22 22 C 1.50699 * 109.47306 * 120.00148 * 2 1 3 23 23 C 1.38225 * 119.98699 * 59.99857 * 22 2 1 24 24 C 1.38183 * 120.05253 * 180.02562 * 23 22 2 25 25 C 1.38495 * 120.02440 * 359.97263 * 24 23 22 26 26 F 1.35096 * 120.01614 * 180.02562 * 25 24 23 27 27 C 1.38401 * 119.97532 * 0.02825 * 25 24 23 28 28 C 1.38441 * 119.94507 * 0.27369 * 27 25 24 29 29 F 1.35106 * 120.01355 * 179.70271 * 28 27 25 30 30 H 1.09000 * 109.47042 * 307.79242 * 1 2 3 31 31 H 1.08997 * 109.47258 * 67.78890 * 1 2 3 32 32 H 1.09001 * 109.47096 * 187.79200 * 1 2 3 33 33 H 1.09003 * 109.88281 * 298.39531 * 7 6 4 34 34 H 1.08994 * 109.88173 * 59.56639 * 7 6 4 35 35 H 1.08997 * 110.84404 * 219.67530 * 8 7 6 36 36 H 1.08994 * 110.66446 * 96.52538 * 8 7 6 37 37 H 1.08997 * 109.47057 * 89.14581 * 12 11 9 38 38 H 1.08997 * 109.46850 * 209.14898 * 12 11 9 39 39 H 1.09000 * 109.47043 * 329.14396 * 12 11 9 40 40 H 0.97000 * 120.00315 * 180.02562 * 16 15 13 41 41 H 1.09004 * 110.36797 * 322.92964 * 21 6 4 42 42 H 1.09002 * 110.36876 * 85.13824 * 21 6 4 43 43 H 1.08004 * 119.97897 * 0.02562 * 23 22 2 44 44 H 1.07999 * 119.99336 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.03162 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5940 -1.7802 -1.1262 6 7 1.8574 -0.1568 -2.4468 7 6 1.2732 1.1665 -2.7100 8 6 1.3026 1.3845 -4.2377 9 6 2.4115 0.4070 -4.7090 10 1 3.3999 0.8505 -4.5895 11 7 2.1893 -0.0096 -6.0958 12 6 0.8900 -0.5539 -6.4981 13 6 3.1963 0.1097 -7.0163 14 1 4.2257 0.1327 -6.6904 15 6 2.8938 0.2012 -8.3678 16 7 1.6544 0.4229 -8.7514 17 14 4.2458 0.0095 -9.6425 18 1 5.5415 -0.2301 -8.9577 19 1 3.9327 -1.1415 -10.5272 20 1 4.3382 1.2483 -10.4562 21 6 2.2142 -0.7805 -3.7341 22 6 2.0324 -0.7104 1.2304 23 6 1.6983 -2.0338 1.4489 24 6 2.1578 -2.6864 2.5769 25 6 2.9542 -2.0151 3.4897 26 9 3.4037 -2.6534 4.5923 27 6 3.2893 -0.6901 3.2721 28 6 2.8232 -0.0355 2.1447 29 9 3.1446 1.2597 1.9339 30 1 -0.3633 0.6298 0.8121 31 1 -0.3633 0.3885 -0.9514 32 1 -0.3633 -1.0182 0.1393 33 1 0.2451 1.1963 -2.3491 34 1 1.8643 1.9375 -2.2160 35 1 1.5686 2.4140 -4.4775 36 1 0.3426 1.1221 -4.6822 37 1 0.2380 0.2596 -6.8159 38 1 1.0285 -1.2523 -7.3234 39 1 0.4370 -1.0741 -5.6541 40 1 1.4430 0.4865 -9.6959 41 1 3.1390 -1.3492 -3.6367 42 1 1.4070 -1.4268 -4.0791 43 1 1.0776 -2.5582 0.7374 44 1 1.8965 -3.7205 2.7464 45 1 3.9107 -0.1659 3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980447182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:22 Heat of formation + Delta-G solvation = -85.403146 kcal Electronic energy + Delta-G solvation = -29373.841042 eV Core-core repulsion = 25027.566294 eV Total energy + Delta-G solvation = -4346.274749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.10008 -50.03960 -41.51420 -39.94706 -38.72876 -36.57106 -35.20759 -33.40185 -31.85553 -31.31300 -30.30480 -29.16516 -28.05284 -26.24072 -25.03418 -24.22478 -23.78543 -22.66210 -20.95502 -20.14717 -19.31152 -18.94484 -18.62399 -17.70690 -17.58860 -17.13384 -17.00410 -16.66272 -16.39974 -16.32846 -15.81709 -15.76558 -15.50875 -15.15654 -15.10155 -14.77882 -14.50110 -14.27677 -14.06612 -13.82407 -13.73409 -13.33400 -13.28985 -12.98928 -12.88489 -12.86089 -12.78703 -12.48076 -12.37214 -12.26289 -12.17920 -12.13156 -12.03479 -11.84341 -11.39100 -10.84845 -10.64011 -10.07366 -9.70187 -9.64319 -8.77582 -7.86725 -5.34219 -0.14740 0.00235 1.45692 1.48240 1.56163 1.57727 1.88383 2.36454 2.50849 2.80281 3.24565 3.27545 3.39865 3.45039 3.55147 3.63086 3.86243 3.92966 4.02599 4.09822 4.13850 4.19991 4.27138 4.31550 4.45485 4.62388 4.68856 4.76072 4.78770 4.83310 4.87426 4.89020 4.94882 5.01471 5.04096 5.16695 5.22822 5.26126 5.30018 5.32528 5.43250 5.62767 5.70844 5.71613 6.31768 6.54213 7.08321 7.13665 7.83328 8.27080 9.17643 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.002338 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.850981 B =11973.232268 C =12224.399895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 H 0.119 0.881 4 C 0.529 3.471 5 O -0.577 6.577 6 N -0.610 5.610 7 C 0.104 3.896 8 C -0.141 4.141 9 C 0.165 3.835 10 H 0.069 0.931 11 N -0.602 5.602 12 C 0.178 3.822 13 C -0.267 4.267 14 H 0.067 0.933 15 C -0.046 4.046 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.270 1.270 19 H -0.292 1.292 20 H -0.290 1.290 21 C 0.099 3.901 22 C -0.120 4.120 23 C -0.032 4.032 24 C -0.161 4.161 25 C 0.120 3.880 26 F -0.135 7.135 27 C -0.194 4.194 28 C 0.125 3.875 29 F -0.132 7.132 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.007 0.993 38 H 0.021 0.979 39 H 0.027 0.973 40 H 0.250 0.750 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.145 0.855 44 H 0.162 0.838 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 0.606 24.873 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 H 0.137 0.863 4 C 0.318 3.682 5 O -0.456 6.456 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.181 4.181 9 C 0.056 3.944 10 H 0.087 0.913 11 N -0.323 5.323 12 C 0.034 3.966 13 C -0.397 4.397 14 H 0.085 0.915 15 C -0.242 4.242 16 N -0.579 5.579 17 Si 0.795 3.205 18 H -0.194 1.194 19 H -0.218 1.218 20 H -0.217 1.217 21 C -0.027 4.027 22 C -0.121 4.121 23 C -0.050 4.050 24 C -0.179 4.179 25 C 0.101 3.899 26 F -0.114 7.114 27 C -0.213 4.213 28 C 0.106 3.894 29 F -0.111 7.111 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.025 0.975 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.163 0.837 44 H 0.179 0.821 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.127 0.059 24.848 25.188 hybrid contribution 0.980 -0.076 -1.145 1.509 sum -3.147 -0.017 23.703 23.911 Atomic orbital electron populations 1.21904 0.89132 1.04048 1.04626 1.20161 0.99908 1.00322 0.87754 0.86317 1.20607 0.78506 0.85259 0.83813 1.90687 1.44386 1.24212 1.86362 1.48461 1.61257 1.19571 1.04995 1.22334 1.00033 0.83382 0.96044 1.23038 1.00214 1.00869 0.93969 1.21525 0.97708 0.91976 0.83220 0.91269 1.43965 1.11681 1.71994 1.04653 1.20494 0.85820 0.95334 0.94998 1.19526 0.88033 1.44450 0.87680 0.91498 1.25721 0.98386 1.00655 0.99424 1.70203 1.18916 1.53898 1.14858 0.85225 0.79283 0.76861 0.79171 1.19435 1.21843 1.21692 1.22600 0.99508 0.97346 0.83208 1.19587 1.00736 0.95763 0.96029 1.20816 0.96717 0.92262 0.95193 1.21415 0.99719 1.02466 0.94321 1.17400 0.97233 0.90477 0.84803 1.91521 1.87447 1.81600 1.50823 1.21105 1.05747 0.94678 0.99800 1.17148 0.97846 0.79085 0.95344 1.91506 1.91056 1.33789 1.94710 0.88948 0.90269 0.91527 0.88320 0.89290 0.89965 0.91260 0.97483 0.96017 0.95486 0.94116 0.93098 0.92183 0.83726 0.82078 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.04 71.98 0.65 -1.24 16 2 C -0.06 -1.16 2.28 -12.29 -0.03 -1.19 16 3 H 0.12 2.03 6.97 -2.39 -0.02 2.01 16 4 C 0.53 14.66 7.02 87.66 0.62 15.27 16 5 O -0.58 -20.30 15.05 -3.03 -0.05 -20.35 16 6 N -0.61 -17.07 3.32 -811.75 -2.70 -19.77 16 7 C 0.10 2.27 6.13 86.73 0.53 2.80 16 8 C -0.14 -4.20 6.50 31.79 0.21 -3.99 16 9 C 0.16 6.28 3.55 46.38 0.16 6.44 16 10 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 11 N -0.60 -28.86 2.96 -695.04 -2.05 -30.92 16 12 C 0.18 8.41 7.63 127.77 0.97 9.38 16 13 C -0.27 -14.32 9.60 84.03 0.81 -13.51 16 14 H 0.07 3.54 7.86 -2.91 -0.02 3.52 16 15 C -0.05 -2.53 5.06 84.86 0.43 -2.10 16 16 N -0.93 -53.49 10.78 21.65 0.23 -53.26 16 17 Si 0.97 44.44 29.57 68.60 2.03 46.47 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 21 C 0.10 3.47 6.50 86.86 0.56 4.04 16 22 C -0.12 -2.43 4.49 -19.82 -0.09 -2.52 16 23 C -0.03 -0.61 7.75 22.25 0.17 -0.44 16 24 C -0.16 -2.77 10.02 22.32 0.22 -2.54 16 25 C 0.12 2.20 7.30 22.37 0.16 2.36 16 26 F -0.14 -2.54 17.27 44.97 0.78 -1.76 16 27 C -0.19 -3.46 10.01 22.36 0.22 -3.24 16 28 C 0.13 2.49 7.24 22.37 0.16 2.65 16 29 F -0.13 -2.67 16.19 44.97 0.73 -1.94 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.00 5.49 -2.39 -0.01 0.99 16 32 H 0.07 0.91 7.14 -2.39 -0.02 0.89 16 33 H 0.10 1.60 5.89 -2.39 -0.01 1.58 16 34 H 0.09 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.20 6.99 -2.39 -0.02 2.18 16 37 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 38 H 0.02 1.12 6.98 -2.39 -0.02 1.11 16 39 H 0.03 1.09 6.39 -2.39 -0.02 1.08 16 40 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.05 1.99 8.00 -2.38 -0.02 1.97 16 42 H 0.06 2.21 6.37 -2.39 -0.02 2.19 16 43 H 0.15 2.71 7.27 -2.91 -0.02 2.69 16 44 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -66.18 366.29 5.76 -60.41 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.02 Total: 8.95 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.77 Total: 12.17 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.52 Total: -103.95 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.50 Total: -3.71 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -66.18 5.76 -60.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980447182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.988 kcal (2) G-P(sol) polarization free energy of solvation -66.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds