Wall clock time and date at job start Tue Mar 31 2020 21:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47029 * 2 1 4 4 C 1.50701 * 109.47062 * 119.99634 * 2 1 3 5 5 O 1.21279 * 120.00095 * 33.58519 * 4 2 1 6 6 N 1.34774 * 119.99923 * 213.58116 * 4 2 1 7 7 C 1.47020 * 125.64967 * 4.66042 * 6 4 2 8 8 C 1.54338 * 107.26862 * 178.84925 * 7 6 4 9 9 C 1.55162 * 103.01859 * 338.13847 * 8 7 6 10 10 H 1.09002 * 111.00460 * 277.23357 * 9 8 7 11 11 N 1.46500 * 111.00283 * 153.38332 * 9 8 7 12 12 C 1.46502 * 119.99501 * 307.80220 * 11 9 8 13 13 C 1.36934 * 120.00040 * 127.81069 * 11 9 8 14 14 H 1.08002 * 120.00052 * 24.33208 * 13 11 9 15 15 C 1.38816 * 119.99902 * 204.33739 * 13 11 9 16 16 N 1.31619 * 119.99966 * 9.89886 * 15 13 11 17 17 Si 1.86792 * 120.00015 * 189.89922 * 15 13 11 18 18 H 1.48506 * 109.47366 * 60.00045 * 17 15 13 19 19 H 1.48507 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47361 * 300.00023 * 17 15 13 21 21 C 1.47428 * 125.65140 * 184.96521 * 6 4 2 22 22 C 1.50703 * 109.47442 * 239.99866 * 2 1 3 23 23 C 1.38232 * 119.98502 * 300.00240 * 22 2 1 24 24 C 1.38183 * 120.04732 * 179.97438 * 23 22 2 25 25 C 1.38491 * 120.02558 * 0.02562 * 24 23 22 26 26 F 1.35108 * 120.01038 * 179.97438 * 25 24 23 27 27 C 1.38394 * 119.97731 * 0.02562 * 25 24 23 28 28 C 1.38439 * 119.94901 * 359.97438 * 27 25 24 29 29 F 1.35097 * 120.01254 * 180.02562 * 28 27 25 30 30 H 1.08999 * 109.46903 * 295.35987 * 1 2 3 31 31 H 1.09001 * 109.47018 * 55.36403 * 1 2 3 32 32 H 1.09002 * 109.46971 * 175.36278 * 1 2 3 33 33 H 1.09001 * 109.88346 * 298.39029 * 7 6 4 34 34 H 1.09001 * 109.88574 * 59.55676 * 7 6 4 35 35 H 1.09005 * 110.84855 * 219.67831 * 8 7 6 36 36 H 1.08996 * 110.67118 * 96.52392 * 8 7 6 37 37 H 1.08998 * 109.47089 * 86.02343 * 12 11 9 38 38 H 1.09011 * 109.46506 * 206.01755 * 12 11 9 39 39 H 1.08995 * 109.47553 * 326.01385 * 12 11 9 40 40 H 0.96992 * 120.00265 * 179.97438 * 16 15 13 41 41 H 1.09007 * 110.36622 * 322.93680 * 21 6 4 42 42 H 1.09005 * 110.36495 * 85.14328 * 21 6 4 43 43 H 1.07996 * 119.97460 * 359.97438 * 23 22 2 44 44 H 1.08005 * 119.98552 * 179.74510 * 24 23 22 45 45 H 1.07998 * 120.02632 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.4096 -1.6452 1.6878 6 7 3.1737 -0.3068 1.8228 7 6 3.9727 0.8648 1.4347 8 6 5.1674 0.9475 2.4083 9 6 4.6725 0.1413 3.6382 10 1 4.0530 0.7601 4.2874 11 7 5.7995 -0.4298 4.3798 12 6 6.8089 -1.2271 3.6786 13 6 5.9092 -0.2186 5.7283 14 1 5.0294 0.0052 6.3132 15 6 7.1515 -0.2920 6.3434 16 7 8.2438 -0.3697 5.6133 17 14 7.2728 -0.2804 8.2074 18 1 6.5301 -1.4421 8.7591 19 1 8.6992 -0.3684 8.6112 20 1 6.6856 0.9778 8.7339 21 6 3.8314 -0.9706 2.9631 22 6 2.0325 -0.7104 -1.2304 23 6 1.6983 -2.0339 -1.4489 24 6 2.1579 -2.6864 -2.5770 25 6 2.9542 -2.0151 -3.4897 26 9 3.4038 -2.6535 -4.5923 27 6 3.2903 -0.6904 -3.2715 28 6 2.8293 -0.0377 -2.1410 29 9 3.1561 1.2556 -1.9270 30 1 -0.3633 0.4402 0.9286 31 1 -0.3633 0.5841 -0.8456 32 1 -0.3633 -1.0243 -0.0831 33 1 4.3325 0.7461 0.4127 34 1 3.3686 1.7685 1.5146 35 1 5.3732 1.9821 2.6829 36 1 6.0516 0.4823 1.9727 37 1 7.5712 -0.5665 3.2657 38 1 7.2717 -1.9237 4.3779 39 1 6.3349 -1.7846 2.8708 40 1 9.1119 -0.4206 6.0431 41 1 3.0860 -1.3574 3.6582 42 1 4.4762 -1.7765 2.6125 43 1 1.0777 -2.5582 -0.7374 44 1 1.8996 -3.7216 -2.7446 45 1 3.9109 -0.1661 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980447189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:34 Heat of formation + Delta-G solvation = -72.872999 kcal Electronic energy + Delta-G solvation = -29801.248994 eV Core-core repulsion = 25455.517593 eV Total energy + Delta-G solvation = -4345.731401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.33846 -49.30758 -40.39308 -38.98298 -37.49592 -34.85190 -34.20935 -31.64453 -31.15082 -29.78797 -29.42628 -28.06550 -26.08653 -25.09664 -23.77815 -23.28214 -22.39507 -21.78008 -19.35042 -18.92573 -18.55280 -17.78588 -17.07063 -16.90412 -16.34476 -16.24410 -15.99583 -15.83831 -15.58633 -14.91411 -14.77985 -14.62471 -14.42029 -13.90609 -13.57667 -13.38823 -13.16364 -13.03003 -12.85725 -12.64072 -12.49761 -12.35268 -12.10994 -12.02431 -11.92366 -11.57343 -11.45081 -11.27728 -10.94280 -10.80855 -10.52506 -10.45486 -10.29161 -9.95538 -9.92014 -9.77797 -9.39871 -8.90207 -8.59352 -8.38594 -6.82098 -5.81255 -3.28106 0.54978 0.66648 2.63306 2.95926 3.17661 3.35940 3.41372 3.42612 3.51872 4.03952 4.22060 4.24332 4.43384 4.47183 4.56502 4.72126 4.91964 4.98898 5.05052 5.25588 5.32918 5.35983 5.47096 5.50883 5.54140 5.56221 5.60741 5.63274 5.71354 5.75377 5.88269 5.89833 5.99823 6.00527 6.26515 6.36269 6.39846 6.50466 6.60831 6.79139 6.85267 7.32682 7.63964 7.71979 7.75233 8.24612 8.34589 9.16194 9.77476 10.26860 11.25009 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.002752 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.431255 B =10170.802451 C =10638.580223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 H 0.102 0.898 4 C 0.534 3.466 5 O -0.542 6.542 6 N -0.608 5.608 7 C 0.101 3.899 8 C -0.150 4.150 9 C 0.173 3.827 10 H 0.078 0.922 11 N -0.584 5.584 12 C 0.160 3.840 13 C -0.261 4.261 14 H 0.069 0.931 15 C 0.006 3.994 16 N -0.906 5.906 17 Si 0.908 3.092 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.084 3.916 22 C -0.117 4.117 23 C -0.047 4.047 24 C -0.160 4.160 25 C 0.129 3.871 26 F -0.132 7.132 27 C -0.191 4.191 28 C 0.139 3.861 29 F -0.126 7.126 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.020 0.980 38 H 0.060 0.940 39 H -0.005 1.005 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 0.977 -18.657 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.120 0.880 4 C 0.322 3.678 5 O -0.420 6.420 6 N -0.341 5.341 7 C -0.022 4.022 8 C -0.191 4.191 9 C 0.062 3.938 10 H 0.097 0.903 11 N -0.304 5.304 12 C 0.016 3.984 13 C -0.391 4.391 14 H 0.087 0.913 15 C -0.193 4.193 16 N -0.551 5.551 17 Si 0.738 3.262 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.209 1.209 21 C -0.040 4.040 22 C -0.119 4.119 23 C -0.065 4.065 24 C -0.179 4.179 25 C 0.110 3.890 26 F -0.110 7.110 27 C -0.211 4.211 28 C 0.119 3.881 29 F -0.104 7.104 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.014 0.986 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.863 0.458 -18.380 22.439 hybrid contribution 0.584 0.275 0.649 0.916 sum -12.279 0.732 -17.731 21.580 Atomic orbital electron populations 1.21676 0.91015 1.03490 1.02549 1.20202 0.98572 1.00225 0.90087 0.87956 1.19886 0.79675 0.84030 0.84253 1.90676 1.56435 1.29668 1.65194 1.48503 1.23132 1.28860 1.33621 1.22101 0.93362 0.87816 0.98956 1.23188 0.96515 1.02321 0.97028 1.21414 0.89939 0.91206 0.91193 0.90343 1.43792 1.24423 1.57142 1.05090 1.20809 0.89973 0.93797 0.93840 1.19196 0.92549 1.44566 0.82765 0.91315 1.25063 0.95375 1.00662 0.98201 1.70043 0.97079 1.54168 1.33777 0.86284 0.76670 0.78144 0.85107 1.20934 1.21580 1.20853 1.23033 0.96218 0.97737 0.87046 1.19571 1.00586 0.95415 0.96330 1.20944 0.96962 0.92605 0.95961 1.21232 1.00171 1.01707 0.94809 1.17326 0.96764 0.90271 0.84683 1.91540 1.87319 1.81508 1.50636 1.20985 1.05788 0.94653 0.99660 1.17076 0.97165 0.79227 0.94641 1.91530 1.90728 1.33622 1.94516 0.91476 0.91666 0.91083 0.92170 0.91720 0.90409 0.90493 0.96176 0.92099 0.98621 0.93541 0.90843 0.91368 0.83121 0.83753 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.64 37.16 0.32 -0.91 16 2 C -0.07 -0.78 2.57 -92.92 -0.24 -1.02 16 3 H 0.10 1.06 5.95 -51.93 -0.31 0.75 16 4 C 0.53 7.99 6.50 -10.99 -0.07 7.92 16 5 O -0.54 -9.60 16.12 5.56 0.09 -9.51 16 6 N -0.61 -9.53 3.33 -170.51 -0.57 -10.10 16 7 C 0.10 1.39 6.02 -3.06 -0.02 1.37 16 8 C -0.15 -2.50 6.50 -24.89 -0.16 -2.66 16 9 C 0.17 3.40 3.55 -65.78 -0.23 3.17 16 10 H 0.08 1.56 7.96 -51.93 -0.41 1.14 16 11 N -0.58 -14.09 2.96 -171.03 -0.51 -14.59 16 12 C 0.16 3.82 7.71 59.85 0.46 4.28 16 13 C -0.26 -6.97 9.61 -15.06 -0.14 -7.11 16 14 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 15 C 0.01 0.15 5.11 -17.43 -0.09 0.06 16 16 N -0.91 -25.66 10.67 55.49 0.59 -25.07 16 17 Si 0.91 21.40 29.56 -169.99 -5.03 16.38 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.08 1.53 6.51 -2.53 -0.02 1.52 16 22 C -0.12 -1.26 4.78 -104.55 -0.50 -1.76 16 23 C -0.05 -0.47 8.75 -39.60 -0.35 -0.82 16 24 C -0.16 -1.45 10.02 -39.51 -0.40 -1.84 16 25 C 0.13 1.24 7.30 -39.43 -0.29 0.95 16 26 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 27 C -0.19 -1.80 10.01 -39.45 -0.39 -2.19 16 28 C 0.14 1.43 7.24 -39.43 -0.29 1.14 16 29 F -0.13 -1.32 16.18 2.25 0.04 -1.29 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.69 7.10 -51.93 -0.37 0.32 16 33 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.37 6.91 -51.93 -0.36 1.01 16 37 H 0.02 0.50 7.62 -51.93 -0.40 0.11 16 38 H 0.06 1.60 6.72 -51.92 -0.35 1.25 16 39 H 0.00 -0.10 6.37 -51.93 -0.33 -0.43 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.07 1.42 7.99 -51.93 -0.41 1.01 16 42 H 0.07 1.32 6.34 -51.93 -0.33 0.99 16 43 H 0.15 1.51 7.11 -52.49 -0.37 1.14 16 44 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -29.85 371.05 -8.29 -38.14 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.14 Total: -0.38 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.40 Total: 2.11 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.48 Total: -49.76 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.85 -8.29 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980447189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.736 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds