Wall clock time and date at job start Tue Mar 31 2020 21:17:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08996 * 109.47501 * 2 1
4 4 C 1.50703 * 109.47548 * 120.00384 * 2 1 3
5 5 O 1.21272 * 120.00098 * 104.30338 * 4 2 1
6 6 N 1.34773 * 119.99515 * 284.30730 * 4 2 1
7 7 C 1.48219 * 119.97316 * 356.30833 * 6 4 2
8 8 C 1.47144 * 110.33915 * 102.47179 * 7 6 4
9 9 C 1.53788 * 111.84365 * 58.29864 * 8 7 6
10 10 N 1.43471 * 107.96118 * 281.66577 * 9 8 7
11 11 C 1.36930 * 118.93516 * 273.60814 * 10 9 8
12 12 H 1.08000 * 120.00721 * 355.58798 * 11 10 9
13 13 C 1.38816 * 119.99527 * 175.58986 * 11 10 9
14 14 N 1.31618 * 120.00289 * 46.06817 * 13 11 10
15 15 Si 1.86807 * 119.99756 * 226.06956 * 13 11 10
16 16 H 1.48502 * 109.46923 * 179.97438 * 15 13 11
17 17 H 1.48502 * 109.46911 * 59.99838 * 15 13 11
18 18 H 1.48501 * 109.47000 * 299.99707 * 15 13 11
19 19 C 1.48862 * 122.11825 * 93.88792 * 10 9 8
20 20 C 1.43622 * 119.96913 * 176.29063 * 6 4 2
21 21 C 1.50704 * 109.46552 * 240.00074 * 2 1 3
22 22 C 1.38420 * 120.02534 * 299.72169 * 21 2 1
23 23 F 1.35097 * 120.01386 * 359.97438 * 22 21 2
24 24 C 1.38479 * 119.96896 * 179.70199 * 22 21 2
25 25 C 1.38204 * 120.02959 * 0.59853 * 24 22 21
26 26 C 1.38211 * 120.04741 * 359.68135 * 25 24 22
27 27 C 1.38422 * 120.02582 * 120.00344 * 21 2 1
28 28 F 1.35103 * 120.00702 * 359.97438 * 27 21 2
29 29 H 1.08999 * 109.46312 * 313.64618 * 1 2 3
30 30 H 1.08995 * 109.47300 * 73.64497 * 1 2 3
31 31 H 1.08997 * 109.47061 * 193.65234 * 1 2 3
32 32 H 1.09000 * 109.32100 * 342.20789 * 7 6 4
33 33 H 1.08995 * 109.18336 * 222.64494 * 7 6 4
34 34 H 1.09002 * 109.00480 * 297.68796 * 8 7 6
35 35 H 1.08995 * 109.00444 * 178.91102 * 8 7 6
36 36 H 1.08994 * 109.76754 * 162.05038 * 9 8 7
37 37 H 1.09008 * 109.80774 * 41.30398 * 9 8 7
38 38 H 0.97001 * 119.99963 * 6.04661 * 14 13 11
39 39 H 1.08995 * 109.47790 * 80.34843 * 19 10 9
40 40 H 1.08994 * 109.47647 * 200.38084 * 19 10 9
41 41 H 1.09000 * 108.87643 * 31.46104 * 20 6 4
42 42 H 1.09000 * 108.87515 * 150.00444 * 20 6 4
43 43 H 1.07999 * 119.98292 * 180.27800 * 24 22 21
44 44 H 1.07995 * 119.97806 * 179.70012 * 25 24 22
45 45 H 1.08004 * 119.98467 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0325 -0.7105 1.2304
5 8 2.4793 -1.8344 1.1417
6 7 1.9852 -0.0968 2.4294
7 6 1.5155 1.3058 2.5253
8 6 0.1325 1.3489 3.0260
9 6 0.0015 0.6777 4.4035
10 7 -0.0178 -0.7429 4.2034
11 6 -1.2119 -1.3583 3.9379
12 1 -2.1286 -0.7876 3.9523
13 6 -1.2440 -2.7160 3.6502
14 7 -0.5650 -3.5627 4.3948
15 14 -2.2509 -3.3412 2.2064
16 1 -2.1189 -4.8174 2.1131
17 1 -1.7556 -2.7201 0.9517
18 1 -3.6782 -2.9829 2.4062
19 6 1.2174 -1.5700 4.2811
20 6 2.3896 -0.8025 3.6130
21 6 2.0322 -0.7104 -1.2305
22 6 1.7028 -2.0373 -1.4472
23 9 0.9313 -2.6964 -0.5553
24 6 2.1598 -2.6872 -2.5814
25 6 2.9547 -2.0152 -3.4906
26 6 3.2890 -0.6920 -3.2724
27 6 2.8281 -0.0383 -2.1421
28 9 3.1546 1.2553 -1.9292
29 1 -0.3632 0.7093 0.7437
30 1 -0.3633 0.2894 -0.9860
31 1 -0.3633 -0.9986 0.2426
32 1 1.5567 1.7681 1.5390
33 1 2.1637 1.8546 3.2084
34 1 -0.5176 0.8355 2.3176
35 1 -0.1836 2.3889 3.1063
36 1 -0.9251 0.9951 4.8816
37 1 0.8513 0.9502 5.0295
38 1 -0.1137 -3.2512 5.1949
39 1 1.4570 -1.7682 5.3258
40 1 1.0565 -2.5134 3.7596
41 1 3.1722 -1.5139 3.3494
42 1 2.7912 -0.0868 4.3304
43 1 1.8992 -3.7211 -2.7529
44 1 3.3146 -2.5243 -4.3725
45 1 3.9105 -0.1680 -3.9834
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981622351.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:17:38
Heat of formation + Delta-G solvation = -50.494606 kcal
Electronic energy + Delta-G solvation = -32114.307777 eV
Core-core repulsion = 27769.546776 eV
Total energy + Delta-G solvation = -4344.761001 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-49.08237 -48.57425 -40.13288 -38.69137 -37.03465 -34.68365 -34.09942 -32.43526
-30.91985 -30.27029 -29.46659 -27.72057 -25.27168 -24.77624 -23.60060 -22.81706
-22.53955 -21.34644 -19.57285 -18.41675 -17.99465 -17.69186 -17.29237 -16.53993
-16.27429 -15.79380 -15.55086 -15.43824 -15.00765 -14.84984 -14.36747 -14.19948
-14.07444 -13.87723 -13.57609 -13.39160 -13.13021 -12.81311 -12.65318 -12.43827
-12.33177 -12.21194 -11.99405 -11.88876 -11.64805 -11.40782 -11.04549 -10.86102
-10.73976 -10.68714 -10.28112 -10.14889 -10.13610 -9.90793 -9.57953 -9.29096
-8.82065 -8.67329 -8.09121 -8.00041 -6.98141 -6.19671 -2.90461 0.93493
1.03356 3.10343 3.29092 3.54403 3.59627 3.67289 3.80156 3.93663
4.40215 4.47390 4.58065 4.69018 4.75705 4.86331 5.06185 5.09656
5.18174 5.32755 5.37438 5.44168 5.56776 5.67860 5.76039 5.80019
5.82133 5.89717 5.96211 6.01981 6.03954 6.09685 6.11424 6.16498
6.26551 6.33320 6.35788 6.52553 6.69455 6.78484 6.79586 6.99650
7.25844 7.34162 7.89015 8.09614 8.56140 8.71147 9.08358 9.94438
10.34269 11.10070
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.013246 B = 0.005507 C = 0.004522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2113.345799 B = 5083.344016 C = 6191.035021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.067 4.067
3 H 0.103 0.897
4 C 0.525 3.475
5 O -0.532 6.532
6 N -0.582 5.582
7 C 0.121 3.879
8 C -0.182 4.182
9 C 0.173 3.827
10 N -0.595 5.595
11 C -0.384 4.384
12 H 0.067 0.933
13 C 0.007 3.993
14 N -0.880 5.880
15 Si 1.012 2.988
16 H -0.288 1.288
17 H -0.288 1.288
18 H -0.295 1.295
19 C 0.119 3.881
20 C 0.103 3.897
21 C -0.144 4.144
22 C 0.175 3.825
23 F -0.106 7.106
24 C -0.174 4.174
25 C -0.063 4.063
26 C -0.176 4.176
27 C 0.131 3.869
28 F -0.133 7.133
29 H 0.081 0.919
30 H 0.061 0.939
31 H 0.079 0.921
32 H 0.071 0.929
33 H 0.064 0.936
34 H 0.082 0.918
35 H 0.056 0.944
36 H 0.042 0.958
37 H 0.031 0.969
38 H 0.271 0.729
39 H 0.020 0.980
40 H 0.099 0.901
41 H 0.073 0.927
42 H 0.055 0.945
43 H 0.141 0.859
44 H 0.140 0.860
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.588 9.716 -13.125 18.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.089 4.089
3 H 0.121 0.879
4 C 0.312 3.688
5 O -0.409 6.409
6 N -0.313 5.313
7 C -0.001 4.001
8 C -0.223 4.223
9 C 0.044 3.956
10 N -0.318 5.318
11 C -0.511 4.511
12 H 0.085 0.915
13 C -0.198 4.198
14 N -0.518 5.518
15 Si 0.842 3.158
16 H -0.213 1.213
17 H -0.216 1.216
18 H -0.223 1.223
19 C -0.007 4.007
20 C -0.022 4.022
21 C -0.147 4.147
22 C 0.155 3.845
23 F -0.084 7.084
24 C -0.193 4.193
25 C -0.081 4.081
26 C -0.195 4.195
27 C 0.112 3.888
28 F -0.112 7.112
29 H 0.100 0.900
30 H 0.080 0.920
31 H 0.098 0.902
32 H 0.089 0.911
33 H 0.083 0.917
34 H 0.101 0.899
35 H 0.074 0.926
36 H 0.060 0.940
37 H 0.049 0.951
38 H 0.081 0.919
39 H 0.038 0.962
40 H 0.117 0.883
41 H 0.092 0.908
42 H 0.074 0.926
43 H 0.159 0.841
44 H 0.158 0.842
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 7.427 7.769 -13.937 17.600
hybrid contribution 0.137 1.648 1.125 2.000
sum 7.564 9.417 -12.812 17.608
Atomic orbital electron populations
1.22054 0.90793 1.05530 1.02553 1.20149 0.98853 0.99795 0.90059
0.87940 1.20028 0.78282 0.86229 0.84226 1.90683 1.45891 1.18492
1.85785 1.47195 1.64604 1.13282 1.06217 1.20791 0.96538 0.81700
1.01098 1.22117 0.96635 1.00194 1.03365 1.20098 0.98312 0.84775
0.92450 1.43745 1.03813 1.01030 1.83167 1.19729 0.86237 0.94858
1.50230 0.91523 1.25361 1.00893 0.91747 1.01790 1.70848 1.32629
1.35898 1.12417 0.84324 0.75541 0.76308 0.79671 1.21330 1.21585
1.22254 1.22539 0.84751 0.96647 0.96745 1.21704 0.98386 0.96147
0.85997 1.19532 1.02675 0.94416 0.98051 1.17202 0.91055 0.89021
0.87252 1.91657 1.70983 1.79793 1.65955 1.21252 1.01800 1.01778
0.94455 1.20779 0.95550 0.93194 0.98591 1.21041 1.04518 0.96091
0.97814 1.17146 0.97474 0.78930 0.95270 1.91483 1.90823 1.34074
1.94800 0.90021 0.92019 0.90195 0.91115 0.91715 0.89939 0.92569
0.93977 0.95095 0.91853 0.96184 0.88275 0.90849 0.92616 0.84067
0.84190 0.84307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.55 8.59 37.16 0.32 -2.23 16
2 C -0.07 -1.11 1.96 -92.92 -0.18 -1.30 16
3 H 0.10 1.46 5.43 -51.93 -0.28 1.18 16
4 C 0.53 10.52 6.54 -10.99 -0.07 10.45 16
5 O -0.53 -12.48 13.31 5.56 0.07 -12.40 16
6 N -0.58 -10.87 2.46 -176.43 -0.43 -11.30 16
7 C 0.12 1.81 5.10 -5.91 -0.03 1.78 16
8 C -0.18 -2.99 5.38 -29.13 -0.16 -3.14 16
9 C 0.17 3.38 5.63 -5.24 -0.03 3.35 16
10 N -0.59 -14.31 2.55 -171.78 -0.44 -14.74 16
11 C -0.38 -10.52 9.15 -15.06 -0.14 -10.66 16
12 H 0.07 1.86 8.03 -52.49 -0.42 1.44 16
13 C 0.01 0.19 4.50 -17.43 -0.08 0.11 16
14 N -0.88 -26.44 11.91 55.49 0.66 -25.78 16
15 Si 1.01 25.93 30.06 -169.99 -5.11 20.82 16
16 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
17 H -0.29 -7.25 6.82 56.52 0.39 -6.87 16
18 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16
19 C 0.12 2.83 5.25 -1.56 -0.01 2.82 16
20 C 0.10 2.03 5.29 -4.39 -0.02 2.00 16
21 C -0.14 -2.31 4.52 -104.48 -0.47 -2.78 16
22 C 0.17 2.94 6.13 -39.43 -0.24 2.70 16
23 F -0.11 -2.22 13.48 2.25 0.03 -2.19 16
24 C -0.17 -2.26 10.02 -39.50 -0.40 -2.65 16
25 C -0.06 -0.64 10.04 -39.60 -0.40 -1.04 16
26 C -0.18 -1.89 10.02 -39.51 -0.40 -2.28 16
27 C 0.13 1.77 7.25 -39.43 -0.29 1.48 16
28 F -0.13 -1.74 16.19 2.25 0.04 -1.71 16
29 H 0.08 1.31 4.49 -51.93 -0.23 1.07 16
30 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16
31 H 0.08 1.65 6.44 -51.93 -0.33 1.32 16
32 H 0.07 0.91 5.56 -51.93 -0.29 0.62 16
33 H 0.06 0.84 8.05 -51.93 -0.42 0.43 16
34 H 0.08 1.56 5.16 -51.93 -0.27 1.29 16
35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
36 H 0.04 0.84 8.00 -51.93 -0.42 0.43 16
37 H 0.03 0.56 7.59 -51.92 -0.39 0.16 16
38 H 0.27 8.09 7.03 -40.82 -0.29 7.80 16
39 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16
40 H 0.10 2.79 5.41 -51.93 -0.28 2.51 16
41 H 0.07 1.50 7.32 -51.93 -0.38 1.12 16
42 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16
43 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16
44 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16
45 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16
LS Contribution 350.90 15.07 5.29 5.29
Total: -1.00 -32.96 350.90 -8.22 -41.18
By element:
Atomic # 1 Polarization: 7.96 SS G_CDS: -5.74 Total: 2.22 kcal
Atomic # 6 Polarization: 1.21 SS G_CDS: -2.59 Total: -1.38 kcal
Atomic # 7 Polarization: -51.61 SS G_CDS: -0.21 Total: -51.82 kcal
Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.40 kcal
Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal
Atomic # 14 Polarization: 25.93 SS G_CDS: -5.11 Total: 20.82 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -32.96 -8.22 -41.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981622351.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.315 kcal
(2) G-P(sol) polarization free energy of solvation -32.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds