Wall clock time and date at job start Tue Mar 31 2020 21:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47501 * 2 1 4 4 C 1.50703 * 109.47548 * 120.00384 * 2 1 3 5 5 O 1.21272 * 120.00098 * 104.30338 * 4 2 1 6 6 N 1.34773 * 119.99515 * 284.30730 * 4 2 1 7 7 C 1.48219 * 119.97316 * 356.30833 * 6 4 2 8 8 C 1.47144 * 110.33915 * 102.47179 * 7 6 4 9 9 C 1.53788 * 111.84365 * 58.29864 * 8 7 6 10 10 N 1.43471 * 107.96118 * 281.66577 * 9 8 7 11 11 C 1.36930 * 118.93516 * 273.60814 * 10 9 8 12 12 H 1.08000 * 120.00721 * 355.58798 * 11 10 9 13 13 C 1.38816 * 119.99527 * 175.58986 * 11 10 9 14 14 N 1.31618 * 120.00289 * 46.06817 * 13 11 10 15 15 Si 1.86807 * 119.99756 * 226.06956 * 13 11 10 16 16 H 1.48502 * 109.46923 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46911 * 59.99838 * 15 13 11 18 18 H 1.48501 * 109.47000 * 299.99707 * 15 13 11 19 19 C 1.48862 * 122.11825 * 93.88792 * 10 9 8 20 20 C 1.43622 * 119.96913 * 176.29063 * 6 4 2 21 21 C 1.50704 * 109.46552 * 240.00074 * 2 1 3 22 22 C 1.38420 * 120.02534 * 299.72169 * 21 2 1 23 23 F 1.35097 * 120.01386 * 359.97438 * 22 21 2 24 24 C 1.38479 * 119.96896 * 179.70199 * 22 21 2 25 25 C 1.38204 * 120.02959 * 0.59853 * 24 22 21 26 26 C 1.38211 * 120.04741 * 359.68135 * 25 24 22 27 27 C 1.38422 * 120.02582 * 120.00344 * 21 2 1 28 28 F 1.35103 * 120.00702 * 359.97438 * 27 21 2 29 29 H 1.08999 * 109.46312 * 313.64618 * 1 2 3 30 30 H 1.08995 * 109.47300 * 73.64497 * 1 2 3 31 31 H 1.08997 * 109.47061 * 193.65234 * 1 2 3 32 32 H 1.09000 * 109.32100 * 342.20789 * 7 6 4 33 33 H 1.08995 * 109.18336 * 222.64494 * 7 6 4 34 34 H 1.09002 * 109.00480 * 297.68796 * 8 7 6 35 35 H 1.08995 * 109.00444 * 178.91102 * 8 7 6 36 36 H 1.08994 * 109.76754 * 162.05038 * 9 8 7 37 37 H 1.09008 * 109.80774 * 41.30398 * 9 8 7 38 38 H 0.97001 * 119.99963 * 6.04661 * 14 13 11 39 39 H 1.08995 * 109.47790 * 80.34843 * 19 10 9 40 40 H 1.08994 * 109.47647 * 200.38084 * 19 10 9 41 41 H 1.09000 * 108.87643 * 31.46104 * 20 6 4 42 42 H 1.09000 * 108.87515 * 150.00444 * 20 6 4 43 43 H 1.07999 * 119.98292 * 180.27800 * 24 22 21 44 44 H 1.07995 * 119.97806 * 179.70012 * 25 24 22 45 45 H 1.08004 * 119.98467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.4793 -1.8344 1.1417 6 7 1.9852 -0.0968 2.4294 7 6 1.5155 1.3058 2.5253 8 6 0.1325 1.3489 3.0260 9 6 0.0015 0.6777 4.4035 10 7 -0.0178 -0.7429 4.2034 11 6 -1.2119 -1.3583 3.9379 12 1 -2.1286 -0.7876 3.9523 13 6 -1.2440 -2.7160 3.6502 14 7 -0.5650 -3.5627 4.3948 15 14 -2.2509 -3.3412 2.2064 16 1 -2.1189 -4.8174 2.1131 17 1 -1.7556 -2.7201 0.9517 18 1 -3.6782 -2.9829 2.4062 19 6 1.2174 -1.5700 4.2811 20 6 2.3896 -0.8025 3.6130 21 6 2.0322 -0.7104 -1.2305 22 6 1.7028 -2.0373 -1.4472 23 9 0.9313 -2.6964 -0.5553 24 6 2.1598 -2.6872 -2.5814 25 6 2.9547 -2.0152 -3.4906 26 6 3.2890 -0.6920 -3.2724 27 6 2.8281 -0.0383 -2.1421 28 9 3.1546 1.2553 -1.9292 29 1 -0.3632 0.7093 0.7437 30 1 -0.3633 0.2894 -0.9860 31 1 -0.3633 -0.9986 0.2426 32 1 1.5567 1.7681 1.5390 33 1 2.1637 1.8546 3.2084 34 1 -0.5176 0.8355 2.3176 35 1 -0.1836 2.3889 3.1063 36 1 -0.9251 0.9951 4.8816 37 1 0.8513 0.9502 5.0295 38 1 -0.1137 -3.2512 5.1949 39 1 1.4570 -1.7682 5.3258 40 1 1.0565 -2.5134 3.7596 41 1 3.1722 -1.5139 3.3494 42 1 2.7912 -0.0868 4.3304 43 1 1.8992 -3.7211 -2.7529 44 1 3.3146 -2.5243 -4.3725 45 1 3.9105 -0.1680 -3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981622351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:38 Heat of formation + Delta-G solvation = -50.494606 kcal Electronic energy + Delta-G solvation = -32114.307777 eV Core-core repulsion = 27769.546776 eV Total energy + Delta-G solvation = -4344.761001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.08237 -48.57425 -40.13288 -38.69137 -37.03465 -34.68365 -34.09942 -32.43526 -30.91985 -30.27029 -29.46659 -27.72057 -25.27168 -24.77624 -23.60060 -22.81706 -22.53955 -21.34644 -19.57285 -18.41675 -17.99465 -17.69186 -17.29237 -16.53993 -16.27429 -15.79380 -15.55086 -15.43824 -15.00765 -14.84984 -14.36747 -14.19948 -14.07444 -13.87723 -13.57609 -13.39160 -13.13021 -12.81311 -12.65318 -12.43827 -12.33177 -12.21194 -11.99405 -11.88876 -11.64805 -11.40782 -11.04549 -10.86102 -10.73976 -10.68714 -10.28112 -10.14889 -10.13610 -9.90793 -9.57953 -9.29096 -8.82065 -8.67329 -8.09121 -8.00041 -6.98141 -6.19671 -2.90461 0.93493 1.03356 3.10343 3.29092 3.54403 3.59627 3.67289 3.80156 3.93663 4.40215 4.47390 4.58065 4.69018 4.75705 4.86331 5.06185 5.09656 5.18174 5.32755 5.37438 5.44168 5.56776 5.67860 5.76039 5.80019 5.82133 5.89717 5.96211 6.01981 6.03954 6.09685 6.11424 6.16498 6.26551 6.33320 6.35788 6.52553 6.69455 6.78484 6.79586 6.99650 7.25844 7.34162 7.89015 8.09614 8.56140 8.71147 9.08358 9.94438 10.34269 11.10070 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.005507 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.345799 B = 5083.344016 C = 6191.035021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 H 0.103 0.897 4 C 0.525 3.475 5 O -0.532 6.532 6 N -0.582 5.582 7 C 0.121 3.879 8 C -0.182 4.182 9 C 0.173 3.827 10 N -0.595 5.595 11 C -0.384 4.384 12 H 0.067 0.933 13 C 0.007 3.993 14 N -0.880 5.880 15 Si 1.012 2.988 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.295 1.295 19 C 0.119 3.881 20 C 0.103 3.897 21 C -0.144 4.144 22 C 0.175 3.825 23 F -0.106 7.106 24 C -0.174 4.174 25 C -0.063 4.063 26 C -0.176 4.176 27 C 0.131 3.869 28 F -0.133 7.133 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.271 0.729 39 H 0.020 0.980 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.588 9.716 -13.125 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 H 0.121 0.879 4 C 0.312 3.688 5 O -0.409 6.409 6 N -0.313 5.313 7 C -0.001 4.001 8 C -0.223 4.223 9 C 0.044 3.956 10 N -0.318 5.318 11 C -0.511 4.511 12 H 0.085 0.915 13 C -0.198 4.198 14 N -0.518 5.518 15 Si 0.842 3.158 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.223 1.223 19 C -0.007 4.007 20 C -0.022 4.022 21 C -0.147 4.147 22 C 0.155 3.845 23 F -0.084 7.084 24 C -0.193 4.193 25 C -0.081 4.081 26 C -0.195 4.195 27 C 0.112 3.888 28 F -0.112 7.112 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.427 7.769 -13.937 17.600 hybrid contribution 0.137 1.648 1.125 2.000 sum 7.564 9.417 -12.812 17.608 Atomic orbital electron populations 1.22054 0.90793 1.05530 1.02553 1.20149 0.98853 0.99795 0.90059 0.87940 1.20028 0.78282 0.86229 0.84226 1.90683 1.45891 1.18492 1.85785 1.47195 1.64604 1.13282 1.06217 1.20791 0.96538 0.81700 1.01098 1.22117 0.96635 1.00194 1.03365 1.20098 0.98312 0.84775 0.92450 1.43745 1.03813 1.01030 1.83167 1.19729 0.86237 0.94858 1.50230 0.91523 1.25361 1.00893 0.91747 1.01790 1.70848 1.32629 1.35898 1.12417 0.84324 0.75541 0.76308 0.79671 1.21330 1.21585 1.22254 1.22539 0.84751 0.96647 0.96745 1.21704 0.98386 0.96147 0.85997 1.19532 1.02675 0.94416 0.98051 1.17202 0.91055 0.89021 0.87252 1.91657 1.70983 1.79793 1.65955 1.21252 1.01800 1.01778 0.94455 1.20779 0.95550 0.93194 0.98591 1.21041 1.04518 0.96091 0.97814 1.17146 0.97474 0.78930 0.95270 1.91483 1.90823 1.34074 1.94800 0.90021 0.92019 0.90195 0.91115 0.91715 0.89939 0.92569 0.93977 0.95095 0.91853 0.96184 0.88275 0.90849 0.92616 0.84067 0.84190 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.59 37.16 0.32 -2.23 16 2 C -0.07 -1.11 1.96 -92.92 -0.18 -1.30 16 3 H 0.10 1.46 5.43 -51.93 -0.28 1.18 16 4 C 0.53 10.52 6.54 -10.99 -0.07 10.45 16 5 O -0.53 -12.48 13.31 5.56 0.07 -12.40 16 6 N -0.58 -10.87 2.46 -176.43 -0.43 -11.30 16 7 C 0.12 1.81 5.10 -5.91 -0.03 1.78 16 8 C -0.18 -2.99 5.38 -29.13 -0.16 -3.14 16 9 C 0.17 3.38 5.63 -5.24 -0.03 3.35 16 10 N -0.59 -14.31 2.55 -171.78 -0.44 -14.74 16 11 C -0.38 -10.52 9.15 -15.06 -0.14 -10.66 16 12 H 0.07 1.86 8.03 -52.49 -0.42 1.44 16 13 C 0.01 0.19 4.50 -17.43 -0.08 0.11 16 14 N -0.88 -26.44 11.91 55.49 0.66 -25.78 16 15 Si 1.01 25.93 30.06 -169.99 -5.11 20.82 16 16 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 17 H -0.29 -7.25 6.82 56.52 0.39 -6.87 16 18 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 19 C 0.12 2.83 5.25 -1.56 -0.01 2.82 16 20 C 0.10 2.03 5.29 -4.39 -0.02 2.00 16 21 C -0.14 -2.31 4.52 -104.48 -0.47 -2.78 16 22 C 0.17 2.94 6.13 -39.43 -0.24 2.70 16 23 F -0.11 -2.22 13.48 2.25 0.03 -2.19 16 24 C -0.17 -2.26 10.02 -39.50 -0.40 -2.65 16 25 C -0.06 -0.64 10.04 -39.60 -0.40 -1.04 16 26 C -0.18 -1.89 10.02 -39.51 -0.40 -2.28 16 27 C 0.13 1.77 7.25 -39.43 -0.29 1.48 16 28 F -0.13 -1.74 16.19 2.25 0.04 -1.71 16 29 H 0.08 1.31 4.49 -51.93 -0.23 1.07 16 30 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.08 1.65 6.44 -51.93 -0.33 1.32 16 32 H 0.07 0.91 5.56 -51.93 -0.29 0.62 16 33 H 0.06 0.84 8.05 -51.93 -0.42 0.43 16 34 H 0.08 1.56 5.16 -51.93 -0.27 1.29 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.84 8.00 -51.93 -0.42 0.43 16 37 H 0.03 0.56 7.59 -51.92 -0.39 0.16 16 38 H 0.27 8.09 7.03 -40.82 -0.29 7.80 16 39 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 40 H 0.10 2.79 5.41 -51.93 -0.28 2.51 16 41 H 0.07 1.50 7.32 -51.93 -0.38 1.12 16 42 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16 43 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -32.96 350.90 -8.22 -41.18 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.74 Total: 2.22 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.59 Total: -1.38 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.21 Total: -51.82 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.11 Total: 20.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.96 -8.22 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981622351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.315 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds