Wall clock time and date at job start Tue Mar 31 2020 21:17:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08996 * 109.47501 * 2 1
4 4 C 1.50703 * 109.47548 * 120.00384 * 2 1 3
5 5 O 1.21272 * 120.00098 * 104.30338 * 4 2 1
6 6 N 1.34773 * 119.99515 * 284.30730 * 4 2 1
7 7 C 1.48219 * 119.97316 * 356.30833 * 6 4 2
8 8 C 1.47144 * 110.33915 * 102.47179 * 7 6 4
9 9 C 1.53788 * 111.84365 * 58.29864 * 8 7 6
10 10 N 1.43471 * 107.96118 * 281.66577 * 9 8 7
11 11 C 1.36930 * 118.93516 * 273.60814 * 10 9 8
12 12 H 1.08000 * 120.00721 * 355.58798 * 11 10 9
13 13 C 1.38816 * 119.99527 * 175.58986 * 11 10 9
14 14 N 1.31618 * 120.00289 * 46.06817 * 13 11 10
15 15 Si 1.86807 * 119.99756 * 226.06956 * 13 11 10
16 16 H 1.48502 * 109.46923 * 179.97438 * 15 13 11
17 17 H 1.48502 * 109.46911 * 59.99838 * 15 13 11
18 18 H 1.48501 * 109.47000 * 299.99707 * 15 13 11
19 19 C 1.48862 * 122.11825 * 93.88792 * 10 9 8
20 20 C 1.43622 * 119.96913 * 176.29063 * 6 4 2
21 21 C 1.50704 * 109.46552 * 240.00074 * 2 1 3
22 22 C 1.38420 * 120.02534 * 299.72169 * 21 2 1
23 23 F 1.35097 * 120.01386 * 359.97438 * 22 21 2
24 24 C 1.38479 * 119.96896 * 179.70199 * 22 21 2
25 25 C 1.38204 * 120.02959 * 0.59853 * 24 22 21
26 26 C 1.38211 * 120.04741 * 359.68135 * 25 24 22
27 27 C 1.38422 * 120.02582 * 120.00344 * 21 2 1
28 28 F 1.35103 * 120.00702 * 359.97438 * 27 21 2
29 29 H 1.08999 * 109.46312 * 313.64618 * 1 2 3
30 30 H 1.08995 * 109.47300 * 73.64497 * 1 2 3
31 31 H 1.08997 * 109.47061 * 193.65234 * 1 2 3
32 32 H 1.09000 * 109.32100 * 342.20789 * 7 6 4
33 33 H 1.08995 * 109.18336 * 222.64494 * 7 6 4
34 34 H 1.09002 * 109.00480 * 297.68796 * 8 7 6
35 35 H 1.08995 * 109.00444 * 178.91102 * 8 7 6
36 36 H 1.08994 * 109.76754 * 162.05038 * 9 8 7
37 37 H 1.09008 * 109.80774 * 41.30398 * 9 8 7
38 38 H 0.97001 * 119.99963 * 6.04661 * 14 13 11
39 39 H 1.08995 * 109.47790 * 80.34843 * 19 10 9
40 40 H 1.08994 * 109.47647 * 200.38084 * 19 10 9
41 41 H 1.09000 * 108.87643 * 31.46104 * 20 6 4
42 42 H 1.09000 * 108.87515 * 150.00444 * 20 6 4
43 43 H 1.07999 * 119.98292 * 180.27800 * 24 22 21
44 44 H 1.07995 * 119.97806 * 179.70012 * 25 24 22
45 45 H 1.08004 * 119.98467 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0325 -0.7105 1.2304
5 8 2.4793 -1.8344 1.1417
6 7 1.9852 -0.0968 2.4294
7 6 1.5155 1.3058 2.5253
8 6 0.1325 1.3489 3.0260
9 6 0.0015 0.6777 4.4035
10 7 -0.0178 -0.7429 4.2034
11 6 -1.2119 -1.3583 3.9379
12 1 -2.1286 -0.7876 3.9523
13 6 -1.2440 -2.7160 3.6502
14 7 -0.5650 -3.5627 4.3948
15 14 -2.2509 -3.3412 2.2064
16 1 -2.1189 -4.8174 2.1131
17 1 -1.7556 -2.7201 0.9517
18 1 -3.6782 -2.9829 2.4062
19 6 1.2174 -1.5700 4.2811
20 6 2.3896 -0.8025 3.6130
21 6 2.0322 -0.7104 -1.2305
22 6 1.7028 -2.0373 -1.4472
23 9 0.9313 -2.6964 -0.5553
24 6 2.1598 -2.6872 -2.5814
25 6 2.9547 -2.0152 -3.4906
26 6 3.2890 -0.6920 -3.2724
27 6 2.8281 -0.0383 -2.1421
28 9 3.1546 1.2553 -1.9292
29 1 -0.3632 0.7093 0.7437
30 1 -0.3633 0.2894 -0.9860
31 1 -0.3633 -0.9986 0.2426
32 1 1.5567 1.7681 1.5390
33 1 2.1637 1.8546 3.2084
34 1 -0.5176 0.8355 2.3176
35 1 -0.1836 2.3889 3.1063
36 1 -0.9251 0.9951 4.8816
37 1 0.8513 0.9502 5.0295
38 1 -0.1137 -3.2512 5.1949
39 1 1.4570 -1.7682 5.3258
40 1 1.0565 -2.5134 3.7596
41 1 3.1722 -1.5139 3.3494
42 1 2.7912 -0.0868 4.3304
43 1 1.8992 -3.7211 -2.7529
44 1 3.3146 -2.5243 -4.3725
45 1 3.9105 -0.1680 -3.9834
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981622351.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:17:37
Heat of formation + Delta-G solvation = -69.927093 kcal
Electronic energy + Delta-G solvation = -32115.150433 eV
Core-core repulsion = 27769.546776 eV
Total energy + Delta-G solvation = -4345.603657 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-50.05835 -49.90639 -41.56470 -39.78024 -38.64870 -36.39142 -35.42470 -34.09008
-32.71961 -31.24254 -30.63923 -29.41870 -26.91071 -26.27880 -25.18201 -24.02154
-23.82341 -22.59468 -21.35751 -19.80428 -19.48394 -19.07577 -18.75922 -17.84957
-17.59086 -16.90449 -16.72478 -16.54711 -16.38049 -16.24414 -15.96649 -15.81041
-15.57727 -15.36767 -15.09884 -15.02668 -14.61781 -14.35401 -13.98425 -13.86420
-13.73750 -13.37628 -13.22845 -13.18413 -12.88484 -12.80453 -12.60001 -12.51714
-12.29572 -12.14300 -12.11278 -12.02668 -11.93731 -11.77366 -11.29103 -10.75734
-10.14522 -9.88472 -9.70508 -9.62870 -8.95321 -8.42930 -5.06023 -0.04641
0.02912 1.42650 1.57027 1.60512 1.69308 2.09904 2.43478 2.59328
2.93311 3.01738 3.27193 3.39082 3.49956 3.56974 3.67173 3.86445
3.95036 4.11083 4.15491 4.19307 4.21311 4.24642 4.39926 4.47182
4.61873 4.64465 4.69821 4.72499 4.81273 4.86009 4.92588 4.96250
5.01732 5.05902 5.08966 5.17402 5.20419 5.21220 5.32257 5.58430
5.77541 5.81185 5.92429 6.34074 6.44859 7.01113 7.23040 7.87889
8.29391 8.88398
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.013246 B = 0.005507 C = 0.004522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2113.345799 B = 5083.344016 C = 6191.035021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.059 4.059
3 H 0.131 0.869
4 C 0.513 3.487
5 O -0.577 6.577
6 N -0.585 5.585
7 C 0.114 3.886
8 C -0.170 4.170
9 C 0.162 3.838
10 N -0.606 5.606
11 C -0.367 4.367
12 H 0.061 0.939
13 C -0.045 4.045
14 N -0.914 5.914
15 Si 1.049 2.951
16 H -0.303 1.303
17 H -0.290 1.290
18 H -0.272 1.272
19 C 0.125 3.875
20 C 0.114 3.886
21 C -0.167 4.167
22 C 0.128 3.872
23 F -0.145 7.145
24 C -0.178 4.178
25 C -0.045 4.045
26 C -0.159 4.159
27 C 0.125 3.875
28 F -0.131 7.131
29 H 0.089 0.911
30 H 0.085 0.915
31 H 0.031 0.969
32 H 0.099 0.901
33 H 0.098 0.902
34 H 0.055 0.945
35 H 0.099 0.901
36 H 0.036 0.964
37 H 0.053 0.947
38 H 0.259 0.741
39 H 0.012 0.988
40 H 0.049 0.951
41 H 0.058 0.942
42 H 0.093 0.907
43 H 0.152 0.848
44 H 0.187 0.813
45 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.963 13.178 -15.748 22.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.080 4.080
3 H 0.148 0.852
4 C 0.301 3.699
5 O -0.457 6.457
6 N -0.316 5.316
7 C -0.006 4.006
8 C -0.210 4.210
9 C 0.035 3.965
10 N -0.330 5.330
11 C -0.495 4.495
12 H 0.079 0.921
13 C -0.244 4.244
14 N -0.554 5.554
15 Si 0.878 3.122
16 H -0.230 1.230
17 H -0.218 1.218
18 H -0.197 1.197
19 C -0.001 4.001
20 C -0.012 4.012
21 C -0.169 4.169
22 C 0.108 3.892
23 F -0.124 7.124
24 C -0.196 4.196
25 C -0.063 4.063
26 C -0.177 4.177
27 C 0.105 3.895
28 F -0.109 7.109
29 H 0.107 0.893
30 H 0.103 0.897
31 H 0.050 0.950
32 H 0.117 0.883
33 H 0.116 0.884
34 H 0.074 0.926
35 H 0.117 0.883
36 H 0.054 0.946
37 H 0.071 0.929
38 H 0.069 0.931
39 H 0.029 0.971
40 H 0.067 0.933
41 H 0.077 0.923
42 H 0.111 0.889
43 H 0.170 0.830
44 H 0.204 0.796
45 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 8.780 11.316 -16.562 21.896
hybrid contribution -0.247 0.644 1.922 2.042
sum 8.533 11.960 -14.640 20.740
Atomic orbital electron populations
1.21955 0.91284 1.02748 1.04027 1.20108 0.98252 1.00732 0.88865
0.85184 1.20788 0.77520 0.85944 0.85617 1.90652 1.47785 1.20600
1.86642 1.47435 1.64138 1.14654 1.05350 1.21131 0.96033 0.79800
1.03648 1.21922 0.97304 1.01833 0.99989 1.20406 0.99016 0.82242
0.94799 1.43931 1.02656 1.02864 1.83557 1.19867 0.87386 0.94401
1.47848 0.92103 1.26096 1.02343 0.92766 1.03236 1.70922 1.35167
1.36254 1.13084 0.83776 0.75902 0.74906 0.77654 1.22956 1.21760
1.19718 1.22292 0.86356 0.95494 0.95945 1.21450 0.95968 0.96614
0.87130 1.19591 1.04243 0.94446 0.98623 1.17770 0.92913 0.90095
0.88410 1.91555 1.72474 1.80661 1.67675 1.21564 1.01801 1.02519
0.93764 1.21311 0.93267 0.92956 0.98756 1.21545 1.03108 0.96147
0.96913 1.17291 0.97354 0.79110 0.95710 1.91486 1.90728 1.33809
1.94874 0.89284 0.89663 0.94987 0.88292 0.88363 0.92631 0.88286
0.94563 0.92869 0.93111 0.97051 0.93307 0.92335 0.88922 0.83043
0.79570 0.80447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.77 8.59 71.98 0.62 -4.15 16
2 C -0.06 -1.89 1.96 -12.28 -0.02 -1.92 16
3 H 0.13 3.33 5.43 -2.39 -0.01 3.32 16
4 C 0.51 20.78 6.54 87.66 0.57 21.35 16
5 O -0.58 -28.51 13.31 -3.01 -0.04 -28.55 16
6 N -0.59 -21.29 2.46 -830.49 -2.04 -23.34 16
7 C 0.11 3.00 5.10 84.23 0.43 3.42 16
8 C -0.17 -5.05 5.38 29.04 0.16 -4.89 16
9 C 0.16 6.04 5.63 87.20 0.49 6.53 16
10 N -0.61 -29.53 2.55 -697.39 -1.78 -31.31 16
11 C -0.37 -20.65 9.15 84.04 0.77 -19.89 16
12 H 0.06 3.45 8.03 -2.91 -0.02 3.42 16
13 C -0.04 -2.67 4.50 84.86 0.38 -2.29 16
14 N -0.91 -58.17 11.91 21.65 0.26 -57.92 16
15 Si 1.05 55.34 30.06 68.60 2.06 57.40 16
16 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16
17 H -0.29 -15.24 6.82 99.48 0.68 -14.56 16
18 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16
19 C 0.13 6.20 5.25 86.68 0.46 6.66 16
20 C 0.11 4.50 5.29 87.67 0.46 4.96 16
21 C -0.17 -5.22 4.52 -19.78 -0.09 -5.31 16
22 C 0.13 4.41 6.13 22.37 0.14 4.55 16
23 F -0.15 -6.58 13.48 44.97 0.61 -5.97 16
24 C -0.18 -4.44 10.02 22.32 0.22 -4.21 16
25 C -0.05 -0.74 10.04 22.26 0.22 -0.52 16
26 C -0.16 -2.72 10.02 22.32 0.22 -2.50 16
27 C 0.12 3.02 7.25 22.37 0.16 3.18 16
28 F -0.13 -2.96 16.19 44.97 0.73 -2.23 16
29 H 0.09 2.75 4.49 -2.39 -0.01 2.74 16
30 H 0.08 2.35 8.06 -2.39 -0.02 2.33 16
31 H 0.03 1.37 6.44 -2.39 -0.02 1.35 16
32 H 0.10 2.09 5.56 -2.39 -0.01 2.07 16
33 H 0.10 2.01 8.05 -2.39 -0.02 1.99 16
34 H 0.06 2.00 5.16 -2.39 -0.01 1.99 16
35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16
36 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16
37 H 0.05 1.75 7.59 -2.38 -0.02 1.73 16
38 H 0.26 16.50 7.03 -92.71 -0.65 15.85 16
39 H 0.01 0.58 7.93 -2.39 -0.02 0.56 16
40 H 0.05 2.94 5.41 -2.39 -0.01 2.93 16
41 H 0.06 2.47 7.32 -2.39 -0.02 2.46 16
42 H 0.09 2.94 7.72 -2.39 -0.02 2.93 16
43 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16
44 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16
45 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16
Total: -1.00 -80.37 350.90 6.11 -74.27
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: 1.12 Total: 12.67 kcal
Atomic # 6 Polarization: -0.22 SS G_CDS: 5.19 Total: 4.98 kcal
Atomic # 7 Polarization: -109.00 SS G_CDS: -3.57 Total: -112.56 kcal
Atomic # 8 Polarization: -28.51 SS G_CDS: -0.04 Total: -28.55 kcal
Atomic # 9 Polarization: -9.54 SS G_CDS: 1.33 Total: -8.20 kcal
Atomic # 14 Polarization: 55.34 SS G_CDS: 2.06 Total: 57.40 kcal
Total: -80.37 6.11 -74.27 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981622351.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.341 kcal
(2) G-P(sol) polarization free energy of solvation -80.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds