Wall clock time and date at job start Tue Mar 31 2020 21:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47501 * 2 1 4 4 C 1.50703 * 109.47548 * 120.00384 * 2 1 3 5 5 O 1.21272 * 120.00098 * 104.30338 * 4 2 1 6 6 N 1.34773 * 119.99515 * 284.30730 * 4 2 1 7 7 C 1.48219 * 119.97316 * 356.30833 * 6 4 2 8 8 C 1.47144 * 110.33915 * 102.47179 * 7 6 4 9 9 C 1.53788 * 111.84365 * 58.29864 * 8 7 6 10 10 N 1.43471 * 107.96118 * 281.66577 * 9 8 7 11 11 C 1.36930 * 118.93516 * 273.60814 * 10 9 8 12 12 H 1.08000 * 120.00721 * 355.58798 * 11 10 9 13 13 C 1.38816 * 119.99527 * 175.58986 * 11 10 9 14 14 N 1.31618 * 120.00289 * 46.06817 * 13 11 10 15 15 Si 1.86807 * 119.99756 * 226.06956 * 13 11 10 16 16 H 1.48502 * 109.46923 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46911 * 59.99838 * 15 13 11 18 18 H 1.48501 * 109.47000 * 299.99707 * 15 13 11 19 19 C 1.48862 * 122.11825 * 93.88792 * 10 9 8 20 20 C 1.43622 * 119.96913 * 176.29063 * 6 4 2 21 21 C 1.50704 * 109.46552 * 240.00074 * 2 1 3 22 22 C 1.38420 * 120.02534 * 299.72169 * 21 2 1 23 23 F 1.35097 * 120.01386 * 359.97438 * 22 21 2 24 24 C 1.38479 * 119.96896 * 179.70199 * 22 21 2 25 25 C 1.38204 * 120.02959 * 0.59853 * 24 22 21 26 26 C 1.38211 * 120.04741 * 359.68135 * 25 24 22 27 27 C 1.38422 * 120.02582 * 120.00344 * 21 2 1 28 28 F 1.35103 * 120.00702 * 359.97438 * 27 21 2 29 29 H 1.08999 * 109.46312 * 313.64618 * 1 2 3 30 30 H 1.08995 * 109.47300 * 73.64497 * 1 2 3 31 31 H 1.08997 * 109.47061 * 193.65234 * 1 2 3 32 32 H 1.09000 * 109.32100 * 342.20789 * 7 6 4 33 33 H 1.08995 * 109.18336 * 222.64494 * 7 6 4 34 34 H 1.09002 * 109.00480 * 297.68796 * 8 7 6 35 35 H 1.08995 * 109.00444 * 178.91102 * 8 7 6 36 36 H 1.08994 * 109.76754 * 162.05038 * 9 8 7 37 37 H 1.09008 * 109.80774 * 41.30398 * 9 8 7 38 38 H 0.97001 * 119.99963 * 6.04661 * 14 13 11 39 39 H 1.08995 * 109.47790 * 80.34843 * 19 10 9 40 40 H 1.08994 * 109.47647 * 200.38084 * 19 10 9 41 41 H 1.09000 * 108.87643 * 31.46104 * 20 6 4 42 42 H 1.09000 * 108.87515 * 150.00444 * 20 6 4 43 43 H 1.07999 * 119.98292 * 180.27800 * 24 22 21 44 44 H 1.07995 * 119.97806 * 179.70012 * 25 24 22 45 45 H 1.08004 * 119.98467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.4793 -1.8344 1.1417 6 7 1.9852 -0.0968 2.4294 7 6 1.5155 1.3058 2.5253 8 6 0.1325 1.3489 3.0260 9 6 0.0015 0.6777 4.4035 10 7 -0.0178 -0.7429 4.2034 11 6 -1.2119 -1.3583 3.9379 12 1 -2.1286 -0.7876 3.9523 13 6 -1.2440 -2.7160 3.6502 14 7 -0.5650 -3.5627 4.3948 15 14 -2.2509 -3.3412 2.2064 16 1 -2.1189 -4.8174 2.1131 17 1 -1.7556 -2.7201 0.9517 18 1 -3.6782 -2.9829 2.4062 19 6 1.2174 -1.5700 4.2811 20 6 2.3896 -0.8025 3.6130 21 6 2.0322 -0.7104 -1.2305 22 6 1.7028 -2.0373 -1.4472 23 9 0.9313 -2.6964 -0.5553 24 6 2.1598 -2.6872 -2.5814 25 6 2.9547 -2.0152 -3.4906 26 6 3.2890 -0.6920 -3.2724 27 6 2.8281 -0.0383 -2.1421 28 9 3.1546 1.2553 -1.9292 29 1 -0.3632 0.7093 0.7437 30 1 -0.3633 0.2894 -0.9860 31 1 -0.3633 -0.9986 0.2426 32 1 1.5567 1.7681 1.5390 33 1 2.1637 1.8546 3.2084 34 1 -0.5176 0.8355 2.3176 35 1 -0.1836 2.3889 3.1063 36 1 -0.9251 0.9951 4.8816 37 1 0.8513 0.9502 5.0295 38 1 -0.1137 -3.2512 5.1949 39 1 1.4570 -1.7682 5.3258 40 1 1.0565 -2.5134 3.7596 41 1 3.1722 -1.5139 3.3494 42 1 2.7912 -0.0868 4.3304 43 1 1.8992 -3.7211 -2.7529 44 1 3.3146 -2.5243 -4.3725 45 1 3.9105 -0.1680 -3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981622351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:37 Heat of formation + Delta-G solvation = -69.927093 kcal Electronic energy + Delta-G solvation = -32115.150433 eV Core-core repulsion = 27769.546776 eV Total energy + Delta-G solvation = -4345.603657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.05835 -49.90639 -41.56470 -39.78024 -38.64870 -36.39142 -35.42470 -34.09008 -32.71961 -31.24254 -30.63923 -29.41870 -26.91071 -26.27880 -25.18201 -24.02154 -23.82341 -22.59468 -21.35751 -19.80428 -19.48394 -19.07577 -18.75922 -17.84957 -17.59086 -16.90449 -16.72478 -16.54711 -16.38049 -16.24414 -15.96649 -15.81041 -15.57727 -15.36767 -15.09884 -15.02668 -14.61781 -14.35401 -13.98425 -13.86420 -13.73750 -13.37628 -13.22845 -13.18413 -12.88484 -12.80453 -12.60001 -12.51714 -12.29572 -12.14300 -12.11278 -12.02668 -11.93731 -11.77366 -11.29103 -10.75734 -10.14522 -9.88472 -9.70508 -9.62870 -8.95321 -8.42930 -5.06023 -0.04641 0.02912 1.42650 1.57027 1.60512 1.69308 2.09904 2.43478 2.59328 2.93311 3.01738 3.27193 3.39082 3.49956 3.56974 3.67173 3.86445 3.95036 4.11083 4.15491 4.19307 4.21311 4.24642 4.39926 4.47182 4.61873 4.64465 4.69821 4.72499 4.81273 4.86009 4.92588 4.96250 5.01732 5.05902 5.08966 5.17402 5.20419 5.21220 5.32257 5.58430 5.77541 5.81185 5.92429 6.34074 6.44859 7.01113 7.23040 7.87889 8.29391 8.88398 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.005507 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.345799 B = 5083.344016 C = 6191.035021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 H 0.131 0.869 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.585 5.585 7 C 0.114 3.886 8 C -0.170 4.170 9 C 0.162 3.838 10 N -0.606 5.606 11 C -0.367 4.367 12 H 0.061 0.939 13 C -0.045 4.045 14 N -0.914 5.914 15 Si 1.049 2.951 16 H -0.303 1.303 17 H -0.290 1.290 18 H -0.272 1.272 19 C 0.125 3.875 20 C 0.114 3.886 21 C -0.167 4.167 22 C 0.128 3.872 23 F -0.145 7.145 24 C -0.178 4.178 25 C -0.045 4.045 26 C -0.159 4.159 27 C 0.125 3.875 28 F -0.131 7.131 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.259 0.741 39 H 0.012 0.988 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.152 0.848 44 H 0.187 0.813 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 13.178 -15.748 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 H 0.148 0.852 4 C 0.301 3.699 5 O -0.457 6.457 6 N -0.316 5.316 7 C -0.006 4.006 8 C -0.210 4.210 9 C 0.035 3.965 10 N -0.330 5.330 11 C -0.495 4.495 12 H 0.079 0.921 13 C -0.244 4.244 14 N -0.554 5.554 15 Si 0.878 3.122 16 H -0.230 1.230 17 H -0.218 1.218 18 H -0.197 1.197 19 C -0.001 4.001 20 C -0.012 4.012 21 C -0.169 4.169 22 C 0.108 3.892 23 F -0.124 7.124 24 C -0.196 4.196 25 C -0.063 4.063 26 C -0.177 4.177 27 C 0.105 3.895 28 F -0.109 7.109 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.170 0.830 44 H 0.204 0.796 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.780 11.316 -16.562 21.896 hybrid contribution -0.247 0.644 1.922 2.042 sum 8.533 11.960 -14.640 20.740 Atomic orbital electron populations 1.21955 0.91284 1.02748 1.04027 1.20108 0.98252 1.00732 0.88865 0.85184 1.20788 0.77520 0.85944 0.85617 1.90652 1.47785 1.20600 1.86642 1.47435 1.64138 1.14654 1.05350 1.21131 0.96033 0.79800 1.03648 1.21922 0.97304 1.01833 0.99989 1.20406 0.99016 0.82242 0.94799 1.43931 1.02656 1.02864 1.83557 1.19867 0.87386 0.94401 1.47848 0.92103 1.26096 1.02343 0.92766 1.03236 1.70922 1.35167 1.36254 1.13084 0.83776 0.75902 0.74906 0.77654 1.22956 1.21760 1.19718 1.22292 0.86356 0.95494 0.95945 1.21450 0.95968 0.96614 0.87130 1.19591 1.04243 0.94446 0.98623 1.17770 0.92913 0.90095 0.88410 1.91555 1.72474 1.80661 1.67675 1.21564 1.01801 1.02519 0.93764 1.21311 0.93267 0.92956 0.98756 1.21545 1.03108 0.96147 0.96913 1.17291 0.97354 0.79110 0.95710 1.91486 1.90728 1.33809 1.94874 0.89284 0.89663 0.94987 0.88292 0.88363 0.92631 0.88286 0.94563 0.92869 0.93111 0.97051 0.93307 0.92335 0.88922 0.83043 0.79570 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.59 71.98 0.62 -4.15 16 2 C -0.06 -1.89 1.96 -12.28 -0.02 -1.92 16 3 H 0.13 3.33 5.43 -2.39 -0.01 3.32 16 4 C 0.51 20.78 6.54 87.66 0.57 21.35 16 5 O -0.58 -28.51 13.31 -3.01 -0.04 -28.55 16 6 N -0.59 -21.29 2.46 -830.49 -2.04 -23.34 16 7 C 0.11 3.00 5.10 84.23 0.43 3.42 16 8 C -0.17 -5.05 5.38 29.04 0.16 -4.89 16 9 C 0.16 6.04 5.63 87.20 0.49 6.53 16 10 N -0.61 -29.53 2.55 -697.39 -1.78 -31.31 16 11 C -0.37 -20.65 9.15 84.04 0.77 -19.89 16 12 H 0.06 3.45 8.03 -2.91 -0.02 3.42 16 13 C -0.04 -2.67 4.50 84.86 0.38 -2.29 16 14 N -0.91 -58.17 11.91 21.65 0.26 -57.92 16 15 Si 1.05 55.34 30.06 68.60 2.06 57.40 16 16 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 17 H -0.29 -15.24 6.82 99.48 0.68 -14.56 16 18 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 19 C 0.13 6.20 5.25 86.68 0.46 6.66 16 20 C 0.11 4.50 5.29 87.67 0.46 4.96 16 21 C -0.17 -5.22 4.52 -19.78 -0.09 -5.31 16 22 C 0.13 4.41 6.13 22.37 0.14 4.55 16 23 F -0.15 -6.58 13.48 44.97 0.61 -5.97 16 24 C -0.18 -4.44 10.02 22.32 0.22 -4.21 16 25 C -0.05 -0.74 10.04 22.26 0.22 -0.52 16 26 C -0.16 -2.72 10.02 22.32 0.22 -2.50 16 27 C 0.12 3.02 7.25 22.37 0.16 3.18 16 28 F -0.13 -2.96 16.19 44.97 0.73 -2.23 16 29 H 0.09 2.75 4.49 -2.39 -0.01 2.74 16 30 H 0.08 2.35 8.06 -2.39 -0.02 2.33 16 31 H 0.03 1.37 6.44 -2.39 -0.02 1.35 16 32 H 0.10 2.09 5.56 -2.39 -0.01 2.07 16 33 H 0.10 2.01 8.05 -2.39 -0.02 1.99 16 34 H 0.06 2.00 5.16 -2.39 -0.01 1.99 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 37 H 0.05 1.75 7.59 -2.38 -0.02 1.73 16 38 H 0.26 16.50 7.03 -92.71 -0.65 15.85 16 39 H 0.01 0.58 7.93 -2.39 -0.02 0.56 16 40 H 0.05 2.94 5.41 -2.39 -0.01 2.93 16 41 H 0.06 2.47 7.32 -2.39 -0.02 2.46 16 42 H 0.09 2.94 7.72 -2.39 -0.02 2.93 16 43 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 44 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -80.37 350.90 6.11 -74.27 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.12 Total: 12.67 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.19 Total: 4.98 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -3.57 Total: -112.56 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.04 Total: -28.55 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 1.33 Total: -8.20 kcal Atomic # 14 Polarization: 55.34 SS G_CDS: 2.06 Total: 57.40 kcal Total: -80.37 6.11 -74.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981622351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.341 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds