Wall clock time and date at job start Tue Mar 31 2020 21:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.50699 * 109.47182 * 240.00295 * 2 1 3 5 5 O 1.21282 * 119.99784 * 255.61841 * 4 2 1 6 6 N 1.34779 * 120.00079 * 75.34247 * 4 2 1 7 7 C 1.48211 * 119.97034 * 354.97923 * 6 4 2 8 8 C 1.47607 * 110.03877 * 102.55192 * 7 6 4 9 9 C 1.53791 * 111.84439 * 58.43510 * 8 7 6 10 10 N 1.43467 * 107.96163 * 281.54244 * 9 8 7 11 11 C 1.36933 * 118.93946 * 273.63531 * 10 9 8 12 12 H 1.07999 * 119.99980 * 140.50228 * 11 10 9 13 13 C 1.38814 * 120.00079 * 320.49099 * 11 10 9 14 14 N 1.31618 * 120.00135 * 158.68028 * 13 11 10 15 15 Si 1.86797 * 119.99902 * 338.68581 * 13 11 10 16 16 H 1.48504 * 109.47224 * 95.26818 * 15 13 11 17 17 H 1.48497 * 109.47000 * 215.26839 * 15 13 11 18 18 H 1.48505 * 109.47269 * 335.26750 * 15 13 11 19 19 C 1.48858 * 122.11972 * 93.60614 * 10 9 8 20 20 C 1.43617 * 119.96991 * 175.25676 * 6 4 2 21 21 C 1.50692 * 109.47175 * 120.00305 * 2 1 3 22 22 C 1.38417 * 120.02783 * 59.72414 * 21 2 1 23 23 F 1.35091 * 120.01356 * 0.02562 * 22 21 2 24 24 C 1.38478 * 119.97496 * 179.75283 * 22 21 2 25 25 C 1.38209 * 120.02517 * 0.52356 * 24 22 21 26 26 C 1.38213 * 120.05007 * 359.74967 * 25 24 22 27 27 C 1.38423 * 120.02246 * 240.00144 * 21 2 1 28 28 F 1.35098 * 120.01514 * 0.02562 * 27 21 2 29 29 H 1.08996 * 109.46810 * 63.90933 * 1 2 3 30 30 H 1.08999 * 109.46906 * 183.90481 * 1 2 3 31 31 H 1.08992 * 109.46975 * 303.90369 * 1 2 3 32 32 H 1.08997 * 109.33011 * 222.78091 * 7 6 4 33 33 H 1.09000 * 109.32627 * 342.24821 * 7 6 4 34 34 H 1.09005 * 109.10231 * 297.75952 * 8 7 6 35 35 H 1.09003 * 108.90679 * 178.98384 * 8 7 6 36 36 H 1.08999 * 109.76216 * 161.93067 * 9 8 7 37 37 H 1.08994 * 109.80488 * 41.18146 * 9 8 7 38 38 H 0.96996 * 120.00415 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.48031 * 200.66332 * 19 10 9 40 40 H 1.09002 * 109.48948 * 80.63665 * 19 10 9 41 41 H 1.09001 * 108.87727 * 31.42252 * 20 6 4 42 42 H 1.09002 * 108.87660 * 149.85678 * 20 6 4 43 43 H 1.07997 * 119.99079 * 180.27934 * 24 22 21 44 44 H 1.08000 * 119.97647 * 179.77831 * 25 24 22 45 45 H 1.07999 * 119.98613 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4805 -1.8338 -1.1416 6 7 1.9786 -0.0992 -2.4306 7 6 1.3247 1.2247 -2.5586 8 6 2.3459 2.2873 -2.6403 9 6 3.2978 2.0760 -3.8296 10 7 4.2489 1.0670 -3.4612 11 6 5.3831 1.4389 -2.7902 12 1 5.7648 0.8209 -1.9910 13 6 6.0424 2.6101 -3.1373 14 7 6.8491 3.1916 -2.2751 15 14 5.7847 3.3610 -4.8282 16 1 4.7294 4.4031 -4.7515 17 1 7.0534 3.9748 -5.2958 18 1 5.3662 2.3020 -5.7816 19 6 4.0420 -0.3713 -3.7844 20 6 2.5496 -0.7342 -3.5853 21 6 2.0324 -0.7104 1.2303 22 6 1.6936 -2.0339 1.4528 23 9 0.9129 -2.6897 0.5666 24 6 2.1601 -2.6873 2.5812 25 6 2.9546 -2.0151 3.4906 26 6 3.2888 -0.6919 3.2724 27 6 2.8282 -0.0382 2.1419 28 9 3.1546 1.2554 1.9292 29 1 -0.3633 0.4520 -0.9229 30 1 -0.3633 -1.0253 0.0700 31 1 -0.3633 0.5732 0.8529 32 1 0.7130 1.2392 -3.4606 33 1 0.6878 1.3978 -1.6912 34 1 2.9267 2.2956 -1.7178 35 1 1.8462 3.2496 -2.7520 36 1 3.8174 3.0072 -4.0557 37 1 2.7321 1.7485 -4.7017 38 1 7.3095 4.0102 -2.5174 39 1 4.6563 -0.9840 -3.1248 40 1 4.3258 -0.5556 -4.8206 41 1 2.4615 -1.8149 -3.4731 42 1 1.9909 -0.4268 -4.4693 43 1 1.8996 -3.7212 2.7527 44 1 3.3150 -2.5243 4.3722 45 1 3.9094 -0.1675 3.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981622352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:42 Heat of formation + Delta-G solvation = -55.602163 kcal Electronic energy + Delta-G solvation = -31587.157047 eV Core-core repulsion = 27242.174566 eV Total energy + Delta-G solvation = -4344.982481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.88238 -48.82279 -40.23163 -38.70472 -37.15413 -34.68855 -34.17575 -32.11816 -31.55396 -30.26063 -29.68848 -27.83623 -25.73176 -24.93767 -23.67122 -22.82373 -22.61992 -21.23974 -20.04052 -18.68457 -18.00977 -17.58075 -16.64192 -16.47600 -16.38280 -15.77150 -15.51862 -15.43484 -15.29161 -15.10892 -14.88580 -14.31915 -14.23898 -13.87036 -13.75263 -13.43958 -13.08817 -13.06393 -12.69252 -12.45898 -12.36745 -12.23977 -12.14655 -11.98946 -11.87286 -11.65643 -11.36993 -11.08641 -11.00932 -10.84067 -10.53487 -10.42938 -10.18186 -9.78529 -9.60152 -9.37898 -8.84242 -8.68376 -8.49811 -8.17310 -6.74164 -5.96263 -3.39164 0.96119 1.02866 2.97443 3.28185 3.29337 3.45935 3.48865 3.51141 3.98438 4.33979 4.44693 4.52795 4.55543 4.74396 4.83297 5.02986 5.08045 5.11931 5.18474 5.27633 5.32846 5.44458 5.55844 5.63780 5.68310 5.75200 5.76875 5.86769 5.91739 5.94663 5.98797 6.11080 6.12156 6.12808 6.14422 6.27638 6.31316 6.57508 6.68795 6.73163 6.78124 6.94889 7.15176 7.75426 8.13491 8.41998 8.57190 9.07367 9.74917 10.13013 11.19493 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004492 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.987434 B = 6231.344952 C = 7043.034213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 H 0.113 0.887 4 C 0.529 3.471 5 O -0.537 6.537 6 N -0.584 5.584 7 C 0.113 3.887 8 C -0.171 4.171 9 C 0.154 3.846 10 N -0.603 5.603 11 C -0.266 4.266 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.901 5.901 15 Si 0.881 3.119 16 H -0.287 1.287 17 H -0.303 1.303 18 H -0.272 1.272 19 C 0.129 3.871 20 C 0.102 3.898 21 C -0.142 4.142 22 C 0.167 3.833 23 F -0.120 7.120 24 C -0.175 4.175 25 C -0.062 4.062 26 C -0.171 4.171 27 C 0.142 3.858 28 F -0.123 7.123 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 -7.149 8.104 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 H 0.131 0.869 4 C 0.316 3.684 5 O -0.414 6.414 6 N -0.315 5.315 7 C -0.009 4.009 8 C -0.212 4.212 9 C 0.027 3.973 10 N -0.326 5.326 11 C -0.395 4.395 12 H 0.091 0.909 13 C -0.165 4.165 14 N -0.542 5.542 15 Si 0.712 3.288 16 H -0.215 1.215 17 H -0.231 1.231 18 H -0.197 1.197 19 C 0.003 3.997 20 C -0.023 4.023 21 C -0.144 4.144 22 C 0.148 3.852 23 F -0.098 7.098 24 C -0.194 4.194 25 C -0.081 4.081 26 C -0.190 4.190 27 C 0.122 3.878 28 F -0.102 7.102 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.893 -7.615 8.095 18.583 hybrid contribution 0.132 0.922 -1.208 1.526 sum -14.761 -6.693 6.887 17.610 Atomic orbital electron populations 1.21982 0.91811 1.03717 1.03137 1.20141 0.97784 1.01166 0.90226 0.86931 1.20025 0.78275 0.85968 0.84089 1.90663 1.46492 1.18782 1.85462 1.47235 1.56582 1.19787 1.07889 1.21123 0.95027 0.82684 1.02066 1.21885 0.98399 0.96657 1.04220 1.20618 0.90408 0.92984 0.93322 1.43889 1.20570 1.00986 1.67138 1.18773 1.01527 1.07849 1.11307 0.90909 1.25494 0.96140 0.97769 0.97049 1.69866 1.31812 1.18736 1.33785 0.86874 0.75744 0.78697 0.87459 1.21476 1.23082 1.19655 1.22127 0.93141 0.86398 0.98023 1.21609 0.95802 0.97940 0.86962 1.19407 1.02968 0.94339 0.97720 1.17039 0.91760 0.89008 0.87436 1.91501 1.71048 1.80257 1.66971 1.21146 1.02129 1.01416 0.94745 1.20791 0.95462 0.93176 0.98621 1.21148 1.03863 0.96070 0.97946 1.17231 0.96371 0.79424 0.94765 1.91568 1.90523 1.33445 1.94623 0.90785 0.91168 0.91284 0.91469 0.90184 0.90267 0.92280 0.93183 0.94571 0.92803 0.92078 0.95016 0.90482 0.91890 0.84294 0.84164 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.62 37.16 0.32 -1.42 16 2 C -0.07 -1.10 1.94 -92.93 -0.18 -1.28 16 3 H 0.11 1.80 6.39 -51.93 -0.33 1.47 16 4 C 0.53 9.62 6.62 -10.98 -0.07 9.54 16 5 O -0.54 -11.24 13.37 5.56 0.07 -11.17 16 6 N -0.58 -9.96 2.45 -176.41 -0.43 -10.40 16 7 C 0.11 1.63 5.08 -5.70 -0.03 1.60 16 8 C -0.17 -3.03 5.65 -28.92 -0.16 -3.20 16 9 C 0.15 3.22 4.54 -5.24 -0.02 3.19 16 10 N -0.60 -14.25 2.10 -172.00 -0.36 -14.61 16 11 C -0.27 -7.51 9.55 -15.06 -0.14 -7.66 16 12 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 13 C 0.04 1.03 5.30 -17.43 -0.09 0.94 16 14 N -0.90 -27.69 13.97 55.49 0.78 -26.91 16 15 Si 0.88 22.28 25.05 -169.99 -4.26 18.02 16 16 H -0.29 -6.96 6.71 56.52 0.38 -6.58 16 17 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.13 2.67 6.85 -1.75 -0.01 2.66 16 20 C 0.10 1.75 5.29 -4.58 -0.02 1.73 16 21 C -0.14 -2.19 4.56 -104.49 -0.48 -2.67 16 22 C 0.17 2.44 6.10 -39.43 -0.24 2.20 16 23 F -0.12 -1.86 13.28 2.25 0.03 -1.83 16 24 C -0.18 -2.04 10.03 -39.50 -0.40 -2.44 16 25 C -0.06 -0.64 10.04 -39.60 -0.40 -1.04 16 26 C -0.17 -2.06 10.03 -39.50 -0.40 -2.45 16 27 C 0.14 2.13 7.25 -39.42 -0.29 1.84 16 28 F -0.12 -2.06 16.19 2.25 0.04 -2.03 16 29 H 0.07 0.76 5.77 -51.93 -0.30 0.46 16 30 H 0.07 0.85 6.19 -51.93 -0.32 0.53 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.82 8.05 -51.93 -0.42 0.41 16 33 H 0.08 0.97 4.15 -51.93 -0.22 0.76 16 34 H 0.08 1.68 7.80 -51.93 -0.41 1.27 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 1.17 3.15 -51.93 -0.16 1.00 16 37 H 0.04 0.67 7.59 -51.93 -0.39 0.28 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.06 1.38 7.97 -51.93 -0.41 0.97 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.32 7.30 -51.93 -0.38 0.94 16 42 H 0.06 0.94 7.73 -51.93 -0.40 0.53 16 43 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -34.03 351.82 -7.31 -41.33 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.86 Total: 0.74 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.61 Total: 1.55 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.02 Total: -51.92 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.07 Total: -3.86 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.26 Total: 18.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.03 -7.31 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981622352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.269 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds