Wall clock time and date at job start Tue Mar 31 2020 21:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.50699 * 109.47182 * 240.00295 * 2 1 3 5 5 O 1.21282 * 119.99784 * 255.61841 * 4 2 1 6 6 N 1.34779 * 120.00079 * 75.34247 * 4 2 1 7 7 C 1.48211 * 119.97034 * 354.97923 * 6 4 2 8 8 C 1.47607 * 110.03877 * 102.55192 * 7 6 4 9 9 C 1.53791 * 111.84439 * 58.43510 * 8 7 6 10 10 N 1.43467 * 107.96163 * 281.54244 * 9 8 7 11 11 C 1.36933 * 118.93946 * 273.63531 * 10 9 8 12 12 H 1.07999 * 119.99980 * 140.50228 * 11 10 9 13 13 C 1.38814 * 120.00079 * 320.49099 * 11 10 9 14 14 N 1.31618 * 120.00135 * 158.68028 * 13 11 10 15 15 Si 1.86797 * 119.99902 * 338.68581 * 13 11 10 16 16 H 1.48504 * 109.47224 * 95.26818 * 15 13 11 17 17 H 1.48497 * 109.47000 * 215.26839 * 15 13 11 18 18 H 1.48505 * 109.47269 * 335.26750 * 15 13 11 19 19 C 1.48858 * 122.11972 * 93.60614 * 10 9 8 20 20 C 1.43617 * 119.96991 * 175.25676 * 6 4 2 21 21 C 1.50692 * 109.47175 * 120.00305 * 2 1 3 22 22 C 1.38417 * 120.02783 * 59.72414 * 21 2 1 23 23 F 1.35091 * 120.01356 * 0.02562 * 22 21 2 24 24 C 1.38478 * 119.97496 * 179.75283 * 22 21 2 25 25 C 1.38209 * 120.02517 * 0.52356 * 24 22 21 26 26 C 1.38213 * 120.05007 * 359.74967 * 25 24 22 27 27 C 1.38423 * 120.02246 * 240.00144 * 21 2 1 28 28 F 1.35098 * 120.01514 * 0.02562 * 27 21 2 29 29 H 1.08996 * 109.46810 * 63.90933 * 1 2 3 30 30 H 1.08999 * 109.46906 * 183.90481 * 1 2 3 31 31 H 1.08992 * 109.46975 * 303.90369 * 1 2 3 32 32 H 1.08997 * 109.33011 * 222.78091 * 7 6 4 33 33 H 1.09000 * 109.32627 * 342.24821 * 7 6 4 34 34 H 1.09005 * 109.10231 * 297.75952 * 8 7 6 35 35 H 1.09003 * 108.90679 * 178.98384 * 8 7 6 36 36 H 1.08999 * 109.76216 * 161.93067 * 9 8 7 37 37 H 1.08994 * 109.80488 * 41.18146 * 9 8 7 38 38 H 0.96996 * 120.00415 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.48031 * 200.66332 * 19 10 9 40 40 H 1.09002 * 109.48948 * 80.63665 * 19 10 9 41 41 H 1.09001 * 108.87727 * 31.42252 * 20 6 4 42 42 H 1.09002 * 108.87660 * 149.85678 * 20 6 4 43 43 H 1.07997 * 119.99079 * 180.27934 * 24 22 21 44 44 H 1.08000 * 119.97647 * 179.77831 * 25 24 22 45 45 H 1.07999 * 119.98613 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4805 -1.8338 -1.1416 6 7 1.9786 -0.0992 -2.4306 7 6 1.3247 1.2247 -2.5586 8 6 2.3459 2.2873 -2.6403 9 6 3.2978 2.0760 -3.8296 10 7 4.2489 1.0670 -3.4612 11 6 5.3831 1.4389 -2.7902 12 1 5.7648 0.8209 -1.9910 13 6 6.0424 2.6101 -3.1373 14 7 6.8491 3.1916 -2.2751 15 14 5.7847 3.3610 -4.8282 16 1 4.7294 4.4031 -4.7515 17 1 7.0534 3.9748 -5.2958 18 1 5.3662 2.3020 -5.7816 19 6 4.0420 -0.3713 -3.7844 20 6 2.5496 -0.7342 -3.5853 21 6 2.0324 -0.7104 1.2303 22 6 1.6936 -2.0339 1.4528 23 9 0.9129 -2.6897 0.5666 24 6 2.1601 -2.6873 2.5812 25 6 2.9546 -2.0151 3.4906 26 6 3.2888 -0.6919 3.2724 27 6 2.8282 -0.0382 2.1419 28 9 3.1546 1.2554 1.9292 29 1 -0.3633 0.4520 -0.9229 30 1 -0.3633 -1.0253 0.0700 31 1 -0.3633 0.5732 0.8529 32 1 0.7130 1.2392 -3.4606 33 1 0.6878 1.3978 -1.6912 34 1 2.9267 2.2956 -1.7178 35 1 1.8462 3.2496 -2.7520 36 1 3.8174 3.0072 -4.0557 37 1 2.7321 1.7485 -4.7017 38 1 7.3095 4.0102 -2.5174 39 1 4.6563 -0.9840 -3.1248 40 1 4.3258 -0.5556 -4.8206 41 1 2.4615 -1.8149 -3.4731 42 1 1.9909 -0.4268 -4.4693 43 1 1.8996 -3.7212 2.7527 44 1 3.3150 -2.5243 4.3722 45 1 3.9094 -0.1675 3.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981622352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:41 Heat of formation + Delta-G solvation = -76.678373 kcal Electronic energy + Delta-G solvation = -31588.070980 eV Core-core repulsion = 27242.174566 eV Total energy + Delta-G solvation = -4345.896414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.08909 -49.92955 -41.56744 -39.79313 -38.70436 -36.23843 -35.45130 -33.67418 -33.54321 -31.25535 -30.77949 -29.41900 -27.30835 -26.19655 -25.32578 -24.00950 -23.84088 -22.48908 -21.72204 -20.00917 -19.11089 -18.78304 -18.68451 -17.82341 -17.63588 -17.19463 -16.83799 -16.66902 -16.56352 -16.35831 -16.24713 -15.65630 -15.44876 -15.29734 -15.17499 -14.99468 -14.68602 -14.55370 -13.87095 -13.82156 -13.78660 -13.73545 -13.31756 -13.13489 -13.12398 -12.90153 -12.73662 -12.66121 -12.45959 -12.27765 -12.10886 -11.95925 -11.81167 -11.60142 -11.47964 -10.78215 -10.61172 -9.90753 -9.71588 -9.59407 -8.70202 -8.20986 -5.61534 -0.05165 0.01301 1.28163 1.40282 1.52085 1.60002 2.09037 2.39627 2.40845 2.94660 3.06269 3.26327 3.35590 3.37420 3.47953 3.75876 3.86824 3.93486 4.06259 4.15911 4.16547 4.23135 4.24417 4.35767 4.43163 4.63397 4.65888 4.67904 4.73326 4.79073 4.84189 4.88707 4.91752 4.99680 5.01019 5.03761 5.06584 5.08187 5.18714 5.19683 5.46667 5.74882 5.80192 5.95405 6.11971 6.41391 7.03452 7.19351 7.64686 8.01406 8.99670 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004492 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.987434 B = 6231.344952 C = 7043.034213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 H 0.098 0.902 4 C 0.519 3.481 5 O -0.573 6.573 6 N -0.588 5.588 7 C 0.111 3.889 8 C -0.161 4.161 9 C 0.142 3.858 10 N -0.611 5.611 11 C -0.257 4.257 12 H 0.012 0.988 13 C -0.021 4.021 14 N -0.953 5.953 15 Si 0.959 3.041 16 H -0.265 1.265 17 H -0.311 1.311 18 H -0.259 1.259 19 C 0.127 3.873 20 C 0.109 3.891 21 C -0.164 4.164 22 C 0.143 3.857 23 F -0.130 7.130 24 C -0.169 4.169 25 C -0.049 4.049 26 C -0.169 4.169 27 C 0.105 3.895 28 F -0.144 7.144 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.263 0.737 39 H 0.022 0.978 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.168 0.832 44 H 0.186 0.814 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 -7.359 7.195 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 H 0.116 0.884 4 C 0.307 3.693 5 O -0.453 6.453 6 N -0.318 5.318 7 C -0.010 4.010 8 C -0.202 4.202 9 C 0.017 3.983 10 N -0.335 5.335 11 C -0.387 4.387 12 H 0.030 0.970 13 C -0.217 4.217 14 N -0.597 5.597 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.240 1.240 18 H -0.183 1.183 19 C 0.002 3.998 20 C -0.016 4.016 21 C -0.166 4.166 22 C 0.124 3.876 23 F -0.109 7.109 24 C -0.187 4.187 25 C -0.066 4.066 26 C -0.188 4.188 27 C 0.086 3.914 28 F -0.123 7.123 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.185 0.815 44 H 0.204 0.796 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.828 -7.821 7.168 20.746 hybrid contribution 1.089 0.892 -0.784 1.611 sum -16.739 -6.929 6.384 19.208 Atomic orbital electron populations 1.21968 0.88886 1.03972 1.04880 1.20143 1.00153 0.99694 0.89122 0.88435 1.20628 0.77662 0.85784 0.85209 1.90627 1.48025 1.20527 1.86141 1.47446 1.56212 1.20652 1.07538 1.21364 0.94319 0.80016 1.05287 1.21742 0.98267 0.99769 1.00373 1.20830 0.90403 0.91198 0.95873 1.43936 1.19873 1.02706 1.66983 1.18462 1.03260 1.07000 1.10017 0.96977 1.26164 0.96209 0.98507 1.00858 1.70023 1.33943 1.19734 1.35983 0.85627 0.75670 0.78384 0.81575 1.19204 1.24040 1.18285 1.22190 0.95577 0.84173 0.97858 1.21525 0.93426 0.98092 0.88584 1.19571 1.03845 0.95177 0.98023 1.17351 0.92787 0.89014 0.88496 1.91464 1.71458 1.80330 1.67603 1.21585 1.00996 1.02631 0.93520 1.21312 0.93749 0.92200 0.99351 1.21537 1.03211 0.96960 0.97057 1.17669 0.98053 0.79126 0.96541 1.91507 1.90944 1.34882 1.94952 0.88947 0.91611 0.89524 0.87254 0.87823 0.95049 0.89139 0.95343 0.90702 0.92833 0.95940 0.93285 0.90651 0.87896 0.81486 0.79638 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.62 71.98 0.62 -2.47 16 2 C -0.07 -2.18 1.94 -12.29 -0.02 -2.20 16 3 H 0.10 3.28 6.39 -2.39 -0.02 3.26 16 4 C 0.52 19.12 6.62 87.66 0.58 19.70 16 5 O -0.57 -24.86 13.37 -3.04 -0.04 -24.90 16 6 N -0.59 -19.35 2.45 -830.41 -2.03 -21.38 16 7 C 0.11 2.85 5.08 84.36 0.43 3.28 16 8 C -0.16 -5.42 5.65 29.17 0.16 -5.25 16 9 C 0.14 5.64 4.54 87.21 0.40 6.03 16 10 N -0.61 -29.04 2.10 -698.08 -1.47 -30.50 16 11 C -0.26 -15.31 9.55 84.03 0.80 -14.50 16 12 H 0.01 0.86 8.06 -2.91 -0.02 0.84 16 13 C -0.02 -1.27 5.30 84.86 0.45 -0.82 16 14 N -0.95 -61.35 13.97 21.65 0.30 -61.05 16 15 Si 0.96 46.54 25.05 68.60 1.72 48.26 16 16 H -0.27 -11.88 6.71 99.48 0.67 -11.21 16 17 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 19 C 0.13 5.29 6.85 86.57 0.59 5.88 16 20 C 0.11 3.54 5.29 87.56 0.46 4.01 16 21 C -0.16 -5.22 4.56 -19.78 -0.09 -5.31 16 22 C 0.14 4.17 6.10 22.37 0.14 4.31 16 23 F -0.13 -4.08 13.28 44.97 0.60 -3.49 16 24 C -0.17 -3.64 10.03 22.32 0.22 -3.42 16 25 C -0.05 -0.88 10.04 22.26 0.22 -0.65 16 26 C -0.17 -3.94 10.03 22.32 0.22 -3.72 16 27 C 0.11 3.30 7.25 22.37 0.16 3.46 16 28 F -0.14 -5.20 16.19 44.97 0.73 -4.47 16 29 H 0.09 1.64 5.77 -2.39 -0.01 1.63 16 30 H 0.06 1.53 6.19 -2.39 -0.01 1.52 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 2.02 8.05 -2.39 -0.02 2.00 16 33 H 0.10 2.21 4.15 -2.39 -0.01 2.20 16 34 H 0.03 1.35 7.80 -2.38 -0.02 1.33 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.03 1.26 3.15 -2.39 -0.01 1.25 16 37 H 0.07 2.41 7.59 -2.39 -0.02 2.39 16 38 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.02 1.07 7.97 -2.39 -0.02 1.05 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.51 7.30 -2.39 -0.02 2.49 16 42 H 0.10 2.57 7.73 -2.39 -0.02 2.55 16 43 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 44 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -81.78 351.82 6.15 -75.63 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.99 Total: 13.58 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.35 Total: 8.32 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -3.19 Total: -112.93 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.33 Total: -7.96 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.72 Total: 48.26 kcal Total: -81.78 6.15 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981622352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.050 kcal (2) G-P(sol) polarization free energy of solvation -81.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds