Wall clock time and date at job start Tue Mar 31 2020 20:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.87275 * 2 1 4 4 C 1.54321 * 109.88193 * 121.02002 * 2 1 3 5 5 H 1.09004 * 110.71712 * 259.96857 * 4 2 1 6 6 N 1.46497 * 110.72191 * 23.24509 * 4 2 1 7 7 C 1.36943 * 119.99606 * 205.00169 * 6 4 2 8 8 H 1.07995 * 120.00487 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99507 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99550 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47415 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47000 * 120.00139 * 11 9 7 14 14 H 1.48501 * 109.46765 * 239.99514 * 11 9 7 15 15 C 1.55157 * 102.94161 * 141.60956 * 4 2 1 16 16 C 1.54908 * 101.58223 * 324.49347 * 15 4 2 17 17 N 1.47021 * 109.87884 * 238.82674 * 2 1 3 18 18 C 1.34777 * 125.65069 * 61.59396 * 17 2 1 19 19 O 1.21278 * 119.99944 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00010 * 179.97438 * 18 17 2 21 21 C 1.50704 * 109.46965 * 180.02562 * 20 18 17 22 22 C 1.38253 * 120.00178 * 90.00379 * 21 20 18 23 23 C 1.38212 * 120.00232 * 179.97438 * 22 21 20 24 24 C 1.38259 * 119.99615 * 0.02562 * 23 22 21 25 25 C 1.38213 * 120.00365 * 359.95404 * 24 23 22 26 26 C 1.50700 * 120.00041 * 180.02562 * 25 24 23 27 27 F 1.39892 * 109.47436 * 30.00280 * 26 25 24 28 28 F 1.39896 * 109.46922 * 150.00627 * 26 25 24 29 29 C 1.38213 * 119.99934 * 269.72321 * 21 20 18 30 30 H 1.09001 * 109.47002 * 298.97991 * 1 2 3 31 31 H 1.08993 * 109.46955 * 58.98429 * 1 2 3 32 32 H 1.09000 * 109.47050 * 178.98257 * 1 2 3 33 33 H 0.96998 * 120.00217 * 25.00102 * 6 4 2 34 34 H 0.97000 * 119.99370 * 179.97438 * 10 9 7 35 35 H 1.08996 * 111.00404 * 82.57307 * 15 4 2 36 36 H 1.09003 * 111.00435 * 206.38408 * 15 4 2 37 37 H 1.09005 * 110.36727 * 155.84913 * 16 15 4 38 38 H 1.08997 * 110.36976 * 278.06472 * 16 15 4 39 39 H 1.09001 * 109.47226 * 299.99805 * 20 18 17 40 40 H 1.08998 * 109.47229 * 59.99946 * 20 18 17 41 41 H 1.08001 * 120.00075 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.00287 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99756 * 179.97438 * 24 23 22 44 44 H 1.09007 * 109.46912 * 269.99957 * 26 25 24 45 45 H 1.08008 * 120.00013 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.3530 -0.0432 2.0201 6 7 1.0472 -1.6832 1.7497 7 6 1.0608 -2.0575 3.0669 8 1 1.8140 -1.6631 3.7327 9 6 0.1063 -2.9442 3.5462 10 7 -0.8120 -3.4246 2.7348 11 14 0.1252 -3.4555 5.3427 12 1 1.2503 -2.7801 6.0378 13 1 -1.1575 -3.0659 5.9818 14 1 0.2980 -4.9274 5.4366 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8805 -0.7343 17 7 2.0300 -0.7157 -1.1830 18 6 1.8071 -0.3655 -2.4652 19 8 1.1424 0.6166 -2.7189 20 6 2.3839 -1.1945 -3.5838 21 6 1.9915 -0.5929 -4.9087 22 6 2.8018 0.3557 -5.5044 23 6 2.4421 0.9070 -6.7197 24 6 1.2717 0.5101 -7.3394 25 6 0.4617 -0.4386 -6.7441 26 6 -0.8137 -0.8716 -7.4200 27 9 -0.6651 -0.7675 -8.8071 28 9 -1.0945 -2.1990 -7.0793 29 6 0.8243 -0.9939 -5.5310 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0182 33 1 0.3705 -2.0372 1.1518 34 1 -1.4787 -4.0445 3.0697 35 1 4.1654 -0.8680 0.6615 36 1 3.4856 -2.4090 1.2832 37 1 3.6716 -2.0358 -1.3896 38 1 2.1902 -2.7736 -0.7094 39 1 3.4706 -1.2113 -3.5005 40 1 1.9987 -2.2120 -3.5179 41 1 3.7159 0.6660 -5.0201 42 1 3.0749 1.6483 -7.1848 43 1 0.9904 0.9411 -8.2889 44 1 -1.6334 -0.2315 -7.0933 45 1 0.1934 -1.7380 -5.0677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986543923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:02 Heat of formation + Delta-G solvation = -94.827661 kcal Electronic energy + Delta-G solvation = -29109.940676 eV Core-core repulsion = 24763.257250 eV Total energy + Delta-G solvation = -4346.683426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.22627 -47.24029 -40.28141 -39.29677 -37.41276 -34.02105 -33.35938 -31.96507 -31.54482 -30.80855 -29.16199 -27.51336 -26.38425 -25.24161 -23.62149 -22.85345 -22.27794 -21.30805 -19.70048 -18.54436 -17.70055 -17.58109 -17.55075 -17.35792 -16.70095 -16.16311 -16.07096 -15.52588 -14.82904 -14.60059 -14.42012 -14.09680 -13.92925 -13.85961 -13.67652 -13.30816 -13.24730 -13.16036 -12.89613 -12.76810 -12.46239 -12.28089 -12.22212 -12.11047 -11.65102 -11.40139 -11.30040 -11.05376 -11.02544 -10.95596 -10.79844 -10.66198 -10.25579 -10.05880 -9.67767 -9.59780 -9.18489 -9.00269 -8.93491 -8.33517 -7.06797 -5.85648 -3.15244 0.92677 1.11626 2.82320 3.14092 3.37876 3.43211 3.44060 3.46183 3.57159 3.94893 4.26082 4.51336 4.52630 4.67423 4.73134 4.76894 4.85177 5.01221 5.05914 5.12102 5.28121 5.33479 5.36222 5.42855 5.55248 5.60468 5.65485 5.72464 5.76537 5.82611 5.97137 6.08650 6.11623 6.14652 6.30557 6.32755 6.39179 6.48891 6.59134 6.65806 6.70456 6.84713 6.99677 7.63394 7.82174 8.32483 8.38971 9.44460 9.99418 10.34376 11.36571 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.002433 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.124484 B =11506.037298 C =12424.940697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 H 0.069 0.931 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.103 3.897 17 N -0.608 5.608 18 C 0.528 3.472 19 O -0.540 6.540 20 C -0.101 4.101 21 C -0.059 4.059 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.091 4.091 25 C -0.169 4.169 26 C 0.314 3.686 27 F -0.202 7.202 28 F -0.199 7.199 29 C -0.071 4.071 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.388 0.612 34 H 0.256 0.744 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 6.323 -19.395 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.087 0.913 4 C 0.059 3.941 5 H 0.088 0.912 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.417 6.417 20 C -0.141 4.141 21 C -0.060 4.060 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.170 4.170 26 C 0.260 3.740 27 F -0.183 7.183 28 F -0.180 7.180 29 C -0.089 4.089 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.225 0.775 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.201 6.797 -19.430 21.807 hybrid contribution -0.211 -0.704 0.786 1.076 sum 6.989 6.093 -18.644 20.822 Atomic orbital electron populations 1.21911 0.94277 1.02865 1.01592 1.22001 0.95432 0.95540 0.84735 0.91289 1.21196 0.89103 0.91655 0.92114 0.91238 1.42559 1.32677 1.51431 1.08884 1.19284 1.10844 1.21239 0.86119 0.90977 1.24752 0.97894 1.00073 0.97920 1.69669 1.18434 1.35478 1.34162 0.86127 0.77272 0.78018 0.84778 1.20528 1.21861 1.21886 1.23517 0.99270 1.02388 0.94931 1.22324 0.94415 0.88854 0.96344 1.48670 1.52056 1.28579 1.04891 1.19973 0.80850 0.85379 0.82216 1.90692 1.39958 1.27847 1.83212 1.20691 1.02808 1.00306 0.90307 1.19288 0.94835 0.97042 0.94798 1.21131 0.99404 0.94963 0.94960 1.21063 0.96842 1.00261 0.95640 1.20871 0.94226 0.96149 0.99618 1.20318 0.97418 1.01543 0.97708 1.20312 0.97123 0.80625 0.75917 1.92980 1.97050 1.96084 1.32186 1.93003 1.94781 1.38299 1.91896 1.20774 0.95874 0.98684 0.93586 0.91536 0.92819 0.91637 0.77533 0.93449 0.92070 0.89407 0.91730 0.90953 0.87949 0.87780 0.85687 0.85387 0.85318 0.86045 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.48 37.16 0.32 -2.46 16 2 C 0.13 2.16 3.43 -66.95 -0.23 1.93 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.13 3.48 -66.10 -0.23 2.90 16 5 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 6 N -0.71 -16.40 4.55 -51.65 -0.23 -16.64 16 7 C -0.24 -6.31 9.96 -15.05 -0.15 -6.46 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -26.90 13.06 55.49 0.72 -26.18 16 11 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 C -0.16 -2.43 6.77 -24.58 -0.17 -2.59 16 16 C 0.10 1.42 6.67 -2.53 -0.02 1.41 16 17 N -0.61 -9.27 3.07 -163.01 -0.50 -9.77 16 18 C 0.53 7.93 7.64 -10.99 -0.08 7.85 16 19 O -0.54 -9.87 15.08 5.56 0.08 -9.78 16 20 C -0.10 -1.12 4.84 -29.03 -0.14 -1.26 16 21 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 22 C -0.09 -0.89 9.70 -39.59 -0.38 -1.28 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.09 -0.88 9.40 -39.58 -0.37 -1.25 16 25 C -0.17 -1.82 5.74 -104.62 -0.60 -2.42 16 26 C 0.31 3.00 5.65 36.01 0.20 3.21 16 27 F -0.20 -2.07 16.48 2.25 0.04 -2.03 16 28 F -0.20 -2.26 16.48 2.25 0.04 -2.22 16 29 C -0.07 -0.84 9.05 -39.58 -0.36 -1.19 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.01 6.90 -51.93 -0.36 0.65 16 32 H 0.06 1.36 6.24 -51.93 -0.32 1.04 16 33 H 0.39 9.64 5.69 -40.82 -0.23 9.41 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.06 0.68 7.48 -51.93 -0.39 0.30 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 0.88 7.79 -51.93 -0.40 0.48 16 40 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.01 7.60 -52.49 -0.40 0.61 16 44 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.13 1.50 7.60 -52.48 -0.40 1.10 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -31.23 376.89 -8.63 -39.87 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.27 Total: 9.24 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.16 Total: -4.66 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.01 Total: -52.59 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.23 -8.63 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.960 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds