Wall clock time and date at job start Tue Mar 31 2020 20:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.87275 * 2 1 4 4 C 1.54321 * 109.88193 * 121.02002 * 2 1 3 5 5 H 1.09004 * 110.71712 * 259.96857 * 4 2 1 6 6 N 1.46497 * 110.72191 * 23.24509 * 4 2 1 7 7 C 1.36943 * 119.99606 * 205.00169 * 6 4 2 8 8 H 1.07995 * 120.00487 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99507 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99550 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47415 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47000 * 120.00139 * 11 9 7 14 14 H 1.48501 * 109.46765 * 239.99514 * 11 9 7 15 15 C 1.55157 * 102.94161 * 141.60956 * 4 2 1 16 16 C 1.54908 * 101.58223 * 324.49347 * 15 4 2 17 17 N 1.47021 * 109.87884 * 238.82674 * 2 1 3 18 18 C 1.34777 * 125.65069 * 61.59396 * 17 2 1 19 19 O 1.21278 * 119.99944 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00010 * 179.97438 * 18 17 2 21 21 C 1.50704 * 109.46965 * 180.02562 * 20 18 17 22 22 C 1.38253 * 120.00178 * 90.00379 * 21 20 18 23 23 C 1.38212 * 120.00232 * 179.97438 * 22 21 20 24 24 C 1.38259 * 119.99615 * 0.02562 * 23 22 21 25 25 C 1.38213 * 120.00365 * 359.95404 * 24 23 22 26 26 C 1.50700 * 120.00041 * 180.02562 * 25 24 23 27 27 F 1.39892 * 109.47436 * 30.00280 * 26 25 24 28 28 F 1.39896 * 109.46922 * 150.00627 * 26 25 24 29 29 C 1.38213 * 119.99934 * 269.72321 * 21 20 18 30 30 H 1.09001 * 109.47002 * 298.97991 * 1 2 3 31 31 H 1.08993 * 109.46955 * 58.98429 * 1 2 3 32 32 H 1.09000 * 109.47050 * 178.98257 * 1 2 3 33 33 H 0.96998 * 120.00217 * 25.00102 * 6 4 2 34 34 H 0.97000 * 119.99370 * 179.97438 * 10 9 7 35 35 H 1.08996 * 111.00404 * 82.57307 * 15 4 2 36 36 H 1.09003 * 111.00435 * 206.38408 * 15 4 2 37 37 H 1.09005 * 110.36727 * 155.84913 * 16 15 4 38 38 H 1.08997 * 110.36976 * 278.06472 * 16 15 4 39 39 H 1.09001 * 109.47226 * 299.99805 * 20 18 17 40 40 H 1.08998 * 109.47229 * 59.99946 * 20 18 17 41 41 H 1.08001 * 120.00075 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.00287 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99756 * 179.97438 * 24 23 22 44 44 H 1.09007 * 109.46912 * 269.99957 * 26 25 24 45 45 H 1.08008 * 120.00013 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.3530 -0.0432 2.0201 6 7 1.0472 -1.6832 1.7497 7 6 1.0608 -2.0575 3.0669 8 1 1.8140 -1.6631 3.7327 9 6 0.1063 -2.9442 3.5462 10 7 -0.8120 -3.4246 2.7348 11 14 0.1252 -3.4555 5.3427 12 1 1.2503 -2.7801 6.0378 13 1 -1.1575 -3.0659 5.9818 14 1 0.2980 -4.9274 5.4366 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8805 -0.7343 17 7 2.0300 -0.7157 -1.1830 18 6 1.8071 -0.3655 -2.4652 19 8 1.1424 0.6166 -2.7189 20 6 2.3839 -1.1945 -3.5838 21 6 1.9915 -0.5929 -4.9087 22 6 2.8018 0.3557 -5.5044 23 6 2.4421 0.9070 -6.7197 24 6 1.2717 0.5101 -7.3394 25 6 0.4617 -0.4386 -6.7441 26 6 -0.8137 -0.8716 -7.4200 27 9 -0.6651 -0.7675 -8.8071 28 9 -1.0945 -2.1990 -7.0793 29 6 0.8243 -0.9939 -5.5310 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0182 33 1 0.3705 -2.0372 1.1518 34 1 -1.4787 -4.0445 3.0697 35 1 4.1654 -0.8680 0.6615 36 1 3.4856 -2.4090 1.2832 37 1 3.6716 -2.0358 -1.3896 38 1 2.1902 -2.7736 -0.7094 39 1 3.4706 -1.2113 -3.5005 40 1 1.9987 -2.2120 -3.5179 41 1 3.7159 0.6660 -5.0201 42 1 3.0749 1.6483 -7.1848 43 1 0.9904 0.9411 -8.2889 44 1 -1.6334 -0.2315 -7.0933 45 1 0.1934 -1.7380 -5.0677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986543923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:01 Heat of formation + Delta-G solvation = -111.562161 kcal Electronic energy + Delta-G solvation = -29110.666338 eV Core-core repulsion = 24763.257250 eV Total energy + Delta-G solvation = -4347.409089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.02356 -48.04868 -41.41098 -40.23287 -38.70837 -35.72363 -34.29189 -33.26136 -32.64123 -32.17310 -30.71292 -28.53123 -27.13318 -26.72913 -25.47673 -23.96233 -23.13309 -22.23208 -21.01214 -19.77827 -19.40033 -18.45638 -18.38272 -18.16102 -17.98456 -17.40507 -16.87917 -16.60173 -16.21874 -15.85623 -15.67191 -15.32759 -15.23033 -14.85312 -14.69063 -14.51235 -14.30111 -14.18408 -14.07939 -13.93946 -13.67257 -13.42334 -13.30363 -13.01247 -12.95410 -12.88532 -12.78605 -12.51903 -12.37369 -12.23334 -12.10627 -11.99384 -11.79456 -11.62936 -11.43759 -10.92509 -10.84045 -9.94555 -9.75333 -9.60043 -8.98289 -7.91603 -5.19325 0.15771 0.33240 1.49624 1.50845 1.59849 1.66834 2.04144 2.58237 2.63705 2.78945 3.23374 3.39805 3.47971 3.60783 3.75981 3.83902 3.90367 3.97600 3.99628 4.10096 4.13746 4.25695 4.30058 4.34820 4.38869 4.43990 4.55263 4.62805 4.65024 4.76367 4.82546 4.90187 4.96734 5.02143 5.08923 5.24930 5.34298 5.35958 5.40830 5.41644 5.48317 5.53645 5.58701 5.92671 6.30225 6.63923 7.20766 7.37589 8.11883 8.35036 9.31872 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.002433 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.124484 B =11506.037298 C =12424.940697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.132 3.868 3 H 0.079 0.921 4 C 0.161 3.839 5 H 0.072 0.928 6 N -0.725 5.725 7 C -0.232 4.232 8 H 0.081 0.919 9 C -0.074 4.074 10 N -0.969 5.969 11 Si 0.968 3.032 12 H -0.264 1.264 13 H -0.300 1.300 14 H -0.297 1.297 15 C -0.147 4.147 16 C 0.107 3.893 17 N -0.608 5.608 18 C 0.525 3.475 19 O -0.576 6.576 20 C -0.092 4.092 21 C -0.076 4.076 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.095 4.095 25 C -0.181 4.181 26 C 0.311 3.689 27 F -0.205 7.205 28 F -0.212 7.212 29 C -0.092 4.092 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.175 7.235 -20.288 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 H 0.097 0.903 4 C 0.051 3.949 5 H 0.090 0.910 6 N -0.366 5.366 7 C -0.364 4.364 8 H 0.099 0.901 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.798 3.202 12 H -0.188 1.188 13 H -0.228 1.228 14 H -0.224 1.224 15 C -0.188 4.188 16 C -0.015 4.015 17 N -0.342 5.342 18 C 0.315 3.685 19 O -0.456 6.456 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.112 4.112 23 C -0.138 4.138 24 C -0.113 4.113 25 C -0.182 4.182 26 C 0.258 3.742 27 F -0.187 7.187 28 F -0.193 7.193 29 C -0.111 4.111 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.211 0.789 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.860 7.729 -20.330 23.880 hybrid contribution -0.985 -0.874 0.985 1.645 sum 8.876 6.854 -19.345 22.360 Atomic orbital electron populations 1.21745 0.96046 1.00812 1.00745 1.21802 0.93879 0.96164 0.85371 0.90286 1.21429 0.89392 0.91347 0.92691 0.91025 1.42685 1.33724 1.52228 1.07951 1.19665 1.09782 1.19549 0.87362 0.90140 1.25477 0.98378 1.01326 1.01479 1.69824 1.19591 1.36873 1.35743 0.85147 0.77105 0.77194 0.80740 1.18808 1.22814 1.22449 1.23361 0.98574 1.01739 0.95113 1.22380 0.95280 0.87400 0.96480 1.48710 1.52145 1.28709 1.04626 1.20698 0.80047 0.85139 0.82588 1.90673 1.41550 1.29692 1.83692 1.20709 1.04498 0.99658 0.88300 1.19443 0.95157 0.97906 0.95156 1.21435 0.99921 0.94471 0.95378 1.21442 0.96845 1.00250 0.95288 1.21171 0.94194 0.95698 1.00247 1.20502 0.98074 1.01956 0.97642 1.20587 0.97749 0.80265 0.75585 1.92966 1.97118 1.96050 1.32537 1.92973 1.94863 1.39474 1.92012 1.20869 0.96420 0.99321 0.94455 0.92647 0.93258 0.94183 0.78923 0.94287 0.88882 0.90764 0.87234 0.92836 0.84684 0.86851 0.83832 0.82649 0.83585 0.83410 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.48 71.98 0.61 -4.59 16 2 C 0.13 4.40 3.43 45.34 0.16 4.56 16 3 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.16 5.71 3.48 46.18 0.16 5.87 16 5 H 0.07 2.50 8.09 -2.39 -0.02 2.49 16 6 N -0.72 -33.56 4.55 -317.32 -1.44 -35.00 16 7 C -0.23 -11.97 9.96 84.03 0.84 -11.14 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 10 N -0.97 -57.71 13.06 21.65 0.28 -57.42 16 11 Si 0.97 44.71 29.55 68.60 2.03 46.73 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 15 C -0.15 -4.09 6.77 31.99 0.22 -3.87 16 16 C 0.11 2.66 6.67 86.85 0.58 3.24 16 17 N -0.61 -17.52 3.07 -788.04 -2.42 -19.94 16 18 C 0.53 14.96 7.64 87.66 0.67 15.63 16 19 O -0.58 -20.70 15.08 -3.02 -0.05 -20.74 16 20 C -0.09 -1.82 4.84 29.10 0.14 -1.68 16 21 C -0.08 -1.64 4.37 -19.87 -0.09 -1.73 16 22 C -0.09 -1.71 9.70 22.27 0.22 -1.50 16 23 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.10 -1.67 9.40 22.27 0.21 -1.46 16 25 C -0.18 -3.74 5.74 -19.87 -0.11 -3.85 16 26 C 0.31 5.75 5.65 71.24 0.40 6.16 16 27 F -0.21 -4.01 16.48 44.97 0.74 -3.26 16 28 F -0.21 -4.84 16.48 44.97 0.74 -4.10 16 29 C -0.09 -2.14 9.05 22.27 0.20 -1.94 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.90 6.90 -2.39 -0.02 1.89 16 32 H 0.04 1.73 6.24 -2.39 -0.01 1.71 16 33 H 0.38 19.24 5.69 -92.71 -0.53 18.71 16 34 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.11 1.81 7.48 -2.38 -0.02 1.79 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.14 1.75 7.79 -2.39 -0.02 1.73 16 40 H 0.11 2.03 8.08 -2.39 -0.02 2.01 16 41 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.15 1.96 7.60 -2.91 -0.02 1.94 16 44 H 0.15 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.12 2.89 7.60 -2.91 -0.02 2.86 16 Total: -1.00 -69.16 376.89 5.26 -63.90 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.49 Total: 31.49 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.89 Total: -1.64 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -3.58 Total: -112.37 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 1.48 Total: -7.37 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -69.16 5.26 -63.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.667 kcal (2) G-P(sol) polarization free energy of solvation -69.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds