Wall clock time and date at job start Tue Mar 31 2020 20:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.00094 * 2 1 4 4 C 1.54336 * 109.99139 * 238.96943 * 2 1 3 5 5 H 1.09007 * 110.51263 * 336.96790 * 4 2 1 6 6 N 1.46495 * 111.00700 * 100.12376 * 4 2 1 7 7 C 1.36937 * 120.00220 * 200.23803 * 6 4 2 8 8 H 1.08001 * 119.99936 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00181 * 179.97438 * 7 6 4 10 10 N 1.31614 * 119.99983 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46847 * 90.00683 * 11 9 7 13 13 H 1.48499 * 109.46972 * 209.99954 * 11 9 7 14 14 H 1.48493 * 109.47424 * 330.00194 * 11 9 7 15 15 C 1.55156 * 103.01888 * 218.66581 * 4 2 1 16 16 C 1.54905 * 101.58499 * 35.30251 * 15 4 2 17 17 N 1.47020 * 109.88895 * 121.09822 * 2 1 3 18 18 C 1.34776 * 125.64618 * 298.40009 * 17 2 1 19 19 O 1.21282 * 120.00196 * 359.70442 * 18 17 2 20 20 C 1.50701 * 119.99889 * 179.71207 * 18 17 2 21 21 C 1.50706 * 109.46813 * 179.97438 * 20 18 17 22 22 C 1.38256 * 120.00138 * 270.01858 * 21 20 18 23 23 C 1.38208 * 119.99920 * 179.72171 * 22 21 20 24 24 C 1.38260 * 120.00088 * 0.52185 * 23 22 21 25 25 C 1.38212 * 119.99650 * 359.47803 * 24 23 22 26 26 C 1.50708 * 119.99857 * 180.27932 * 25 24 23 27 27 F 1.39895 * 109.46894 * 30.00928 * 26 25 24 28 28 F 1.39907 * 109.46727 * 150.00219 * 26 25 24 29 29 C 1.38216 * 119.99769 * 90.00349 * 21 20 18 30 30 H 1.09000 * 109.46823 * 300.35564 * 1 2 3 31 31 H 1.08993 * 109.47550 * 60.35366 * 1 2 3 32 32 H 1.08998 * 109.46746 * 180.36145 * 1 2 3 33 33 H 0.96998 * 119.99821 * 20.22852 * 6 4 2 34 34 H 0.96993 * 120.00365 * 179.97438 * 10 9 7 35 35 H 1.09003 * 111.00032 * 277.22518 * 15 4 2 36 36 H 1.08998 * 111.00401 * 153.38110 * 15 4 2 37 37 H 1.09004 * 110.36565 * 204.15431 * 16 15 4 38 38 H 1.08999 * 110.46069 * 81.87698 * 16 15 4 39 39 H 1.09000 * 109.47134 * 59.99998 * 20 18 17 40 40 H 1.08993 * 109.47324 * 299.99391 * 20 18 17 41 41 H 1.07999 * 120.00076 * 0.02562 * 22 21 20 42 42 H 1.08004 * 120.00251 * 180.27790 * 23 22 21 43 43 H 1.08002 * 120.00476 * 179.76436 * 24 23 22 44 44 H 1.08999 * 109.47286 * 270.00349 * 26 25 24 45 45 H 1.07997 * 119.99803 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4406 -1.6197 6 7 2.4631 0.1939 -2.2893 7 6 2.5623 -0.2274 -3.5885 8 1 2.3420 -1.2539 -3.8416 9 6 2.9460 0.6650 -4.5801 10 7 3.2148 1.9159 -4.2716 11 14 3.0820 0.0900 -6.3522 12 1 1.7766 0.2776 -7.0350 13 1 4.1247 0.8833 -7.0513 14 1 3.4527 -1.3476 -6.3791 15 6 3.2863 -1.5183 -0.6916 16 6 2.8100 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8075 -0.3621 2.4656 19 8 1.1477 0.6237 2.7180 20 6 2.3786 -1.1935 3.5853 21 6 1.9875 -0.5893 4.9094 22 6 2.8018 0.3558 5.5054 23 6 2.4403 0.9141 6.7170 24 6 1.2698 0.5197 7.3381 25 6 0.4558 -0.4251 6.7423 26 6 -0.8233 -0.8505 7.4163 27 9 -1.3275 0.2126 8.1730 28 9 -1.7616 -1.2184 6.4459 29 6 0.8147 -0.9797 5.5278 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0065 33 1 2.6611 1.1159 -2.0619 34 1 3.4833 2.5394 -4.9644 35 1 4.1669 -0.8767 -0.6581 36 1 3.4806 -2.4154 -1.2794 37 1 3.6657 -2.0412 1.3930 38 1 2.1807 -2.7722 0.7131 39 1 3.4652 -1.2160 3.5034 40 1 1.9881 -2.2090 3.5196 41 1 3.7179 0.6614 5.0220 42 1 3.0741 1.6557 7.1804 43 1 0.9891 0.9531 8.2867 44 1 -0.6245 -1.6997 8.0700 45 1 0.1783 -1.7175 5.0618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986543924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:06 Heat of formation + Delta-G solvation = -99.837387 kcal Electronic energy + Delta-G solvation = -28819.641762 eV Core-core repulsion = 24472.741098 eV Total energy + Delta-G solvation = -4346.900664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.26772 -47.28717 -40.32308 -39.31574 -37.37619 -34.15231 -33.43492 -32.02111 -31.57719 -30.90912 -29.35703 -27.62924 -26.44284 -25.23316 -23.21613 -22.86269 -22.33859 -21.33701 -20.10044 -18.83556 -17.77285 -17.63027 -17.41065 -17.26112 -16.86398 -16.19746 -16.05285 -15.51391 -14.98879 -14.66347 -14.44987 -14.11865 -13.95537 -13.75849 -13.65850 -13.40162 -13.30123 -13.26093 -12.98027 -12.83205 -12.52143 -12.38953 -12.20011 -12.07918 -11.79130 -11.62694 -11.43039 -11.17890 -11.11453 -11.05238 -10.85637 -10.61888 -10.27455 -10.04181 -9.80614 -9.65041 -9.23316 -9.00550 -8.95994 -8.42008 -7.05903 -5.83976 -3.14592 0.87569 1.06087 2.76349 3.03543 3.38664 3.39377 3.44570 3.46304 3.50358 3.86941 4.19697 4.46808 4.52486 4.57789 4.66498 4.70471 4.80814 4.94623 5.01082 5.07715 5.22461 5.25854 5.30328 5.34577 5.45772 5.55028 5.58371 5.65330 5.71619 5.77132 5.92188 6.05049 6.07362 6.10815 6.11199 6.25800 6.28157 6.43611 6.56008 6.59453 6.61338 6.72000 6.89937 7.63135 7.74262 8.31942 8.34288 9.44786 9.99309 10.33909 11.38229 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.002136 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.062167 B =13107.769284 C =13373.712717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.526 3.474 19 O -0.534 6.534 20 C -0.100 4.100 21 C -0.061 4.061 22 C -0.085 4.085 23 C -0.119 4.119 24 C -0.090 4.090 25 C -0.171 4.171 26 C 0.315 3.685 27 F -0.201 7.201 28 F -0.198 7.198 29 C -0.071 4.071 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -9.702 24.996 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.411 6.411 20 C -0.139 4.139 21 C -0.062 4.062 22 C -0.103 4.103 23 C -0.137 4.137 24 C -0.108 4.108 25 C -0.172 4.172 26 C 0.261 3.739 27 F -0.182 7.182 28 F -0.180 7.180 29 C -0.090 4.090 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.976 -9.192 25.006 26.715 hybrid contribution 0.157 0.076 -1.046 1.060 sum -1.820 -9.116 23.960 25.700 Atomic orbital electron populations 1.22037 0.94895 1.01565 1.02728 1.21884 0.94379 0.96902 0.84423 0.90549 1.21233 0.93491 0.91632 0.87194 0.91832 1.42339 1.80734 1.09354 1.03113 1.19191 1.39193 0.95244 0.83815 0.90996 1.24771 1.02064 0.95660 0.98183 1.69660 1.52309 1.03211 1.32556 0.86178 0.77372 0.77613 0.84913 1.21629 1.21755 1.20697 1.23560 1.01414 1.01737 0.92965 1.22403 0.94624 0.88251 0.97323 1.48594 1.52359 1.28516 1.04948 1.20020 0.80874 0.85541 0.82177 1.90725 1.39874 1.27349 1.83130 1.20676 1.02980 0.99975 0.90318 1.19287 0.94792 0.97302 0.94792 1.21168 0.99503 0.94741 0.94912 1.21090 0.96845 1.00058 0.95674 1.20884 0.94168 0.95610 1.00106 1.20327 0.97029 1.01928 0.97934 1.20294 0.82814 0.87384 0.83386 1.92991 1.88751 1.59935 1.76500 1.93016 1.67819 1.91838 1.65296 1.20721 0.95597 0.99345 0.93299 0.91995 0.91185 0.93124 0.78001 0.93349 0.90622 0.90555 0.91332 0.91665 0.87817 0.87939 0.85555 0.85292 0.85282 0.86211 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.11 37.16 0.34 -2.26 16 2 C 0.13 2.23 3.21 -66.95 -0.22 2.02 16 3 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 4 C 0.18 3.30 3.11 -66.09 -0.21 3.09 16 5 H 0.06 1.20 7.82 -51.92 -0.41 0.79 16 6 N -0.71 -17.16 5.25 -51.65 -0.27 -17.43 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 11 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C -0.16 -2.42 6.77 -24.59 -0.17 -2.59 16 16 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 17 N -0.61 -8.96 3.06 -163.01 -0.50 -9.45 16 18 C 0.53 7.69 7.63 -10.99 -0.08 7.61 16 19 O -0.53 -9.93 15.08 5.56 0.08 -9.85 16 20 C -0.10 -1.00 4.84 -29.03 -0.14 -1.14 16 21 C -0.06 -0.66 4.37 -104.62 -0.46 -1.12 16 22 C -0.09 -0.86 9.70 -39.59 -0.38 -1.25 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.09 -0.82 9.40 -39.58 -0.37 -1.20 16 25 C -0.17 -1.70 5.73 -104.62 -0.60 -2.30 16 26 C 0.31 2.69 5.65 36.01 0.20 2.89 16 27 F -0.20 -2.02 16.48 2.25 0.04 -1.98 16 28 F -0.20 -2.17 16.48 2.25 0.04 -2.13 16 29 C -0.07 -0.76 9.06 -39.58 -0.36 -1.12 16 30 H 0.06 1.10 6.89 -51.93 -0.36 0.74 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.39 10.04 7.53 -40.82 -0.31 9.73 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 40 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.13 0.96 7.60 -52.49 -0.40 0.56 16 44 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.13 1.26 7.60 -52.49 -0.40 0.86 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -32.85 380.71 -8.69 -41.54 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.41 Total: 8.27 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.10 Total: -4.67 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.05 Total: -53.67 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.85 -8.69 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.298 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds