Wall clock time and date at job start Tue Mar 31 2020 20:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.00094 * 2 1 4 4 C 1.54336 * 109.99139 * 238.96943 * 2 1 3 5 5 H 1.09007 * 110.51263 * 336.96790 * 4 2 1 6 6 N 1.46495 * 111.00700 * 100.12376 * 4 2 1 7 7 C 1.36937 * 120.00220 * 200.23803 * 6 4 2 8 8 H 1.08001 * 119.99936 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00181 * 179.97438 * 7 6 4 10 10 N 1.31614 * 119.99983 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46847 * 90.00683 * 11 9 7 13 13 H 1.48499 * 109.46972 * 209.99954 * 11 9 7 14 14 H 1.48493 * 109.47424 * 330.00194 * 11 9 7 15 15 C 1.55156 * 103.01888 * 218.66581 * 4 2 1 16 16 C 1.54905 * 101.58499 * 35.30251 * 15 4 2 17 17 N 1.47020 * 109.88895 * 121.09822 * 2 1 3 18 18 C 1.34776 * 125.64618 * 298.40009 * 17 2 1 19 19 O 1.21282 * 120.00196 * 359.70442 * 18 17 2 20 20 C 1.50701 * 119.99889 * 179.71207 * 18 17 2 21 21 C 1.50706 * 109.46813 * 179.97438 * 20 18 17 22 22 C 1.38256 * 120.00138 * 270.01858 * 21 20 18 23 23 C 1.38208 * 119.99920 * 179.72171 * 22 21 20 24 24 C 1.38260 * 120.00088 * 0.52185 * 23 22 21 25 25 C 1.38212 * 119.99650 * 359.47803 * 24 23 22 26 26 C 1.50708 * 119.99857 * 180.27932 * 25 24 23 27 27 F 1.39895 * 109.46894 * 30.00928 * 26 25 24 28 28 F 1.39907 * 109.46727 * 150.00219 * 26 25 24 29 29 C 1.38216 * 119.99769 * 90.00349 * 21 20 18 30 30 H 1.09000 * 109.46823 * 300.35564 * 1 2 3 31 31 H 1.08993 * 109.47550 * 60.35366 * 1 2 3 32 32 H 1.08998 * 109.46746 * 180.36145 * 1 2 3 33 33 H 0.96998 * 119.99821 * 20.22852 * 6 4 2 34 34 H 0.96993 * 120.00365 * 179.97438 * 10 9 7 35 35 H 1.09003 * 111.00032 * 277.22518 * 15 4 2 36 36 H 1.08998 * 111.00401 * 153.38110 * 15 4 2 37 37 H 1.09004 * 110.36565 * 204.15431 * 16 15 4 38 38 H 1.08999 * 110.46069 * 81.87698 * 16 15 4 39 39 H 1.09000 * 109.47134 * 59.99998 * 20 18 17 40 40 H 1.08993 * 109.47324 * 299.99391 * 20 18 17 41 41 H 1.07999 * 120.00076 * 0.02562 * 22 21 20 42 42 H 1.08004 * 120.00251 * 180.27790 * 23 22 21 43 43 H 1.08002 * 120.00476 * 179.76436 * 24 23 22 44 44 H 1.08999 * 109.47286 * 270.00349 * 26 25 24 45 45 H 1.07997 * 119.99803 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4406 -1.6197 6 7 2.4631 0.1939 -2.2893 7 6 2.5623 -0.2274 -3.5885 8 1 2.3420 -1.2539 -3.8416 9 6 2.9460 0.6650 -4.5801 10 7 3.2148 1.9159 -4.2716 11 14 3.0820 0.0900 -6.3522 12 1 1.7766 0.2776 -7.0350 13 1 4.1247 0.8833 -7.0513 14 1 3.4527 -1.3476 -6.3791 15 6 3.2863 -1.5183 -0.6916 16 6 2.8100 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8075 -0.3621 2.4656 19 8 1.1477 0.6237 2.7180 20 6 2.3786 -1.1935 3.5853 21 6 1.9875 -0.5893 4.9094 22 6 2.8018 0.3558 5.5054 23 6 2.4403 0.9141 6.7170 24 6 1.2698 0.5197 7.3381 25 6 0.4558 -0.4251 6.7423 26 6 -0.8233 -0.8505 7.4163 27 9 -1.3275 0.2126 8.1730 28 9 -1.7616 -1.2184 6.4459 29 6 0.8147 -0.9797 5.5278 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0065 33 1 2.6611 1.1159 -2.0619 34 1 3.4833 2.5394 -4.9644 35 1 4.1669 -0.8767 -0.6581 36 1 3.4806 -2.4154 -1.2794 37 1 3.6657 -2.0412 1.3930 38 1 2.1807 -2.7722 0.7131 39 1 3.4652 -1.2160 3.5034 40 1 1.9881 -2.2090 3.5196 41 1 3.7179 0.6614 5.0220 42 1 3.0741 1.6557 7.1804 43 1 0.9891 0.9531 8.2867 44 1 -0.6245 -1.6997 8.0700 45 1 0.1783 -1.7175 5.0618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986543924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:05 Heat of formation + Delta-G solvation = -118.879151 kcal Electronic energy + Delta-G solvation = -28820.467475 eV Core-core repulsion = 24472.741098 eV Total energy + Delta-G solvation = -4347.726377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.98861 -48.02579 -41.39992 -40.20351 -38.66343 -35.90241 -34.30468 -33.29841 -32.65983 -32.21982 -30.89100 -28.54993 -27.11361 -26.85011 -24.87603 -23.99361 -23.13569 -22.23709 -21.47283 -20.04482 -19.10566 -18.42957 -18.36871 -18.13676 -18.04940 -17.29503 -16.88491 -16.56918 -16.45114 -15.83881 -15.43084 -15.38601 -15.22982 -14.82539 -14.74351 -14.55782 -14.49650 -14.13687 -14.02820 -13.88372 -13.62558 -13.39566 -13.32672 -13.12931 -12.98340 -12.89901 -12.79260 -12.63972 -12.51861 -12.18094 -12.11589 -12.06380 -11.78303 -11.70982 -11.52465 -10.94821 -10.84787 -9.94234 -9.75434 -9.63694 -9.02572 -7.94150 -5.24129 0.15383 0.33329 1.49170 1.50765 1.58916 1.66294 1.96806 2.56745 2.63100 2.85494 3.26762 3.37700 3.48948 3.57313 3.76033 3.79030 3.88419 3.99426 4.02330 4.10612 4.15094 4.19823 4.30004 4.37175 4.39512 4.44232 4.52828 4.57558 4.64992 4.66659 4.77068 4.89951 4.94318 5.02809 5.05146 5.21100 5.25956 5.33834 5.37031 5.41166 5.48530 5.53723 5.55475 5.92237 6.26314 6.62055 7.19779 7.32503 8.05059 8.28507 9.29539 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.002136 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.062167 B =13107.769284 C =13373.712717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 H 0.040 0.960 4 C 0.169 3.831 5 H 0.068 0.932 6 N -0.731 5.731 7 C -0.234 4.234 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.264 1.264 15 C -0.148 4.148 16 C 0.104 3.896 17 N -0.610 5.610 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.088 4.088 21 C -0.078 4.078 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.096 4.096 25 C -0.182 4.182 26 C 0.310 3.690 27 F -0.211 7.211 28 F -0.215 7.215 29 C -0.085 4.085 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.370 0.630 34 H 0.250 0.750 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.165 0.835 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 -12.631 26.484 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.059 0.941 4 C 0.060 3.940 5 H 0.086 0.914 6 N -0.370 5.370 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.217 1.217 13 H -0.227 1.227 14 H -0.188 1.188 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.312 3.688 19 O -0.462 6.462 20 C -0.128 4.128 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.114 4.114 25 C -0.183 4.183 26 C 0.257 3.743 27 F -0.192 7.192 28 F -0.196 7.196 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.202 0.798 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.182 0.818 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.413 -12.207 26.530 29.238 hybrid contribution -0.056 0.998 -1.404 1.724 sum -1.469 -11.210 25.125 27.552 Atomic orbital electron populations 1.21921 0.94598 1.02332 1.01338 1.21548 0.94530 0.95382 0.85652 0.94140 1.21439 0.95103 0.91073 0.86418 0.91440 1.42527 1.81151 1.09564 1.03746 1.19613 1.36688 0.95467 0.84818 0.89830 1.25589 1.03258 0.95894 1.02226 1.69832 1.54688 1.04485 1.33310 0.85137 0.76735 0.77791 0.80077 1.21747 1.22667 1.18827 1.23369 0.98783 1.01154 0.95560 1.22577 0.96101 0.87765 0.95287 1.48657 1.52483 1.28965 1.04303 1.20920 0.79947 0.85250 0.82693 1.90707 1.42068 1.29650 1.83776 1.20719 1.04334 1.00121 0.87578 1.19472 0.95155 0.97899 0.95287 1.21430 1.00055 0.94826 0.95459 1.21408 0.97113 1.00204 0.95498 1.21155 0.94123 0.95335 1.00760 1.20563 0.97671 1.02072 0.98013 1.20762 0.81677 0.88329 0.83500 1.92966 1.88865 1.60780 1.76638 1.92979 1.68460 1.91944 1.66208 1.20887 0.95811 0.99900 0.93763 0.93229 0.92687 0.91156 0.79837 0.94144 0.92606 0.89280 0.87541 0.88670 0.85133 0.84974 0.84637 0.83253 0.83762 0.81821 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.11 71.98 0.66 -4.25 16 2 C 0.13 4.71 3.21 45.34 0.15 4.86 16 3 H 0.04 1.71 7.70 -2.38 -0.02 1.69 16 4 C 0.17 6.24 3.11 46.18 0.14 6.38 16 5 H 0.07 2.45 7.82 -2.38 -0.02 2.43 16 6 N -0.73 -35.73 5.25 -317.31 -1.67 -37.39 16 7 C -0.23 -12.44 9.98 84.03 0.84 -11.60 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 10 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 11 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 15 C -0.15 -4.29 6.77 31.98 0.22 -4.08 16 16 C 0.10 2.10 6.69 86.85 0.58 2.68 16 17 N -0.61 -16.81 3.06 -788.05 -2.41 -19.23 16 18 C 0.52 14.43 7.63 87.66 0.67 15.10 16 19 O -0.58 -21.77 15.08 -3.03 -0.05 -21.82 16 20 C -0.09 -1.48 4.84 29.10 0.14 -1.34 16 21 C -0.08 -1.53 4.37 -19.86 -0.09 -1.62 16 22 C -0.10 -1.87 9.70 22.27 0.22 -1.65 16 23 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 24 C -0.10 -1.62 9.40 22.27 0.21 -1.41 16 25 C -0.18 -3.35 5.73 -19.86 -0.11 -3.47 16 26 C 0.31 4.80 5.65 71.24 0.40 5.20 16 27 F -0.21 -4.00 16.48 44.97 0.74 -3.26 16 28 F -0.21 -4.48 16.48 44.97 0.74 -3.74 16 29 C -0.09 -1.69 9.06 22.27 0.20 -1.49 16 30 H 0.05 1.80 6.89 -2.39 -0.02 1.79 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.37 20.16 7.53 -92.71 -0.70 19.46 16 34 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.11 1.43 7.48 -2.38 -0.02 1.42 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 1.50 7.79 -2.39 -0.02 1.48 16 40 H 0.13 1.45 8.09 -2.39 -0.02 1.43 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.14 1.89 7.60 -2.91 -0.02 1.87 16 44 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.13 2.40 7.60 -2.91 -0.02 2.37 16 Total: -1.00 -74.70 380.71 4.89 -69.81 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.31 Total: 30.01 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.91 Total: -2.45 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.80 Total: -115.72 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.48 Total: -6.99 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.70 4.89 -69.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.068 kcal (2) G-P(sol) polarization free energy of solvation -74.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds