Wall clock time and date at job start Tue Mar 31 2020 20:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87396 * 2 1 4 4 C 1.54322 * 110.01049 * 121.10082 * 2 1 3 5 5 H 1.08992 * 110.72150 * 23.13580 * 4 2 1 6 6 N 1.46500 * 110.71680 * 260.04275 * 4 2 1 7 7 C 1.36939 * 119.99868 * 155.00050 * 6 4 2 8 8 H 1.08004 * 119.99940 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00071 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00202 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00261 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47017 * 89.99313 * 11 9 7 13 13 H 1.48493 * 109.47054 * 210.00097 * 11 9 7 14 14 H 1.48507 * 109.46567 * 329.99515 * 11 9 7 15 15 C 1.55156 * 102.94117 * 141.68288 * 4 2 1 16 16 C 1.55123 * 101.48498 * 324.33032 * 15 4 2 17 17 N 1.47025 * 109.87972 * 238.98540 * 2 1 3 18 18 C 1.34777 * 125.65000 * 61.45406 * 17 2 1 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50702 * 119.99928 * 180.27553 * 18 17 2 21 21 C 1.50700 * 109.46869 * 179.72354 * 20 18 17 22 22 C 1.38233 * 119.99587 * 269.72348 * 21 20 18 23 23 C 1.38237 * 119.99768 * 179.79130 * 22 21 20 24 24 C 1.38234 * 119.99719 * 0.44122 * 23 22 21 25 25 C 1.50708 * 120.00036 * 179.83508 * 24 23 22 26 26 F 1.39899 * 109.46945 * 29.97736 * 25 24 23 27 27 F 1.39894 * 109.47206 * 149.97408 * 25 24 23 28 28 C 1.38238 * 120.00465 * 359.81318 * 24 23 22 29 29 C 1.38233 * 119.99980 * 90.00014 * 21 20 18 30 30 H 1.08997 * 109.47236 * 179.56249 * 1 2 3 31 31 H 1.09007 * 109.46934 * 299.56438 * 1 2 3 32 32 H 1.09002 * 109.47351 * 59.56109 * 1 2 3 33 33 H 0.97003 * 120.00605 * 334.99958 * 6 4 2 34 34 H 0.96995 * 120.00312 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00556 * 82.57167 * 15 4 2 36 36 H 1.08999 * 111.00040 * 206.38572 * 15 4 2 37 37 H 1.09004 * 110.49673 * 278.45187 * 16 15 4 38 38 H 1.09004 * 110.34018 * 156.06510 * 16 15 4 39 39 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 40 40 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 41 41 H 1.07996 * 120.00354 * 359.97438 * 22 21 20 42 42 H 1.08002 * 120.00300 * 180.27391 * 23 22 21 43 43 H 1.09000 * 109.46778 * 269.98181 * 25 24 23 44 44 H 1.07994 * 120.00177 * 180.02562 * 28 24 23 45 45 H 1.08000 * 120.00213 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 1.3092 -1.4449 1.6197 6 7 2.4580 0.1970 2.2863 7 6 2.4634 -0.1942 3.5986 8 1 2.1731 -1.2003 3.8634 9 6 2.8428 0.7019 4.5885 10 7 2.8475 0.3261 5.8499 11 14 3.3456 2.4418 4.1305 12 1 2.1492 3.3213 4.1397 13 1 4.3379 2.9453 5.1137 14 1 3.9494 2.4415 2.7737 15 6 3.2917 -1.5108 0.6893 16 6 2.8130 -1.8793 -0.7394 17 7 2.0299 -0.7124 -1.1850 18 6 1.8049 -0.3602 -2.4663 19 8 1.1379 0.6212 -2.7172 20 6 2.3763 -1.1897 -3.5872 21 6 1.9761 -0.5898 -4.9105 22 6 0.8058 -0.9925 -5.5261 23 6 0.4365 -0.4391 -6.7378 24 6 1.2421 0.5103 -7.3382 25 6 0.8414 1.1110 -8.6611 26 9 -0.5540 1.1308 -8.7606 27 9 1.3336 2.4176 -8.7482 28 6 2.4151 0.9092 -6.7251 29 6 2.7822 0.3589 -5.5113 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5071 0.8939 32 1 -0.3634 0.5206 -0.8860 33 1 2.7191 1.1004 2.0485 34 1 3.1123 0.9524 6.5416 35 1 4.1681 -0.8634 0.6564 36 1 3.4924 -2.4070 1.2762 37 1 2.1851 -2.7701 -0.7137 38 1 3.6681 -2.0359 -1.3970 39 1 3.4635 -1.2058 -3.5095 40 1 1.9921 -2.2073 -3.5185 41 1 0.1785 -1.7373 -5.0591 42 1 -0.4801 -0.7504 -7.2168 43 1 1.2550 0.5119 -9.4723 44 1 3.0443 1.6512 -7.1940 45 1 3.6986 0.6705 -5.0322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986546420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:24 Heat of formation + Delta-G solvation = -95.942722 kcal Electronic energy + Delta-G solvation = -28641.846750 eV Core-core repulsion = 24295.114971 eV Total energy + Delta-G solvation = -4346.731779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.33502 -47.35467 -40.41730 -39.39798 -37.51672 -34.31657 -33.70375 -31.80585 -31.30203 -31.05613 -30.00888 -28.73321 -25.44552 -25.40712 -23.12207 -22.82032 -22.67433 -21.33986 -20.29235 -18.94875 -17.95404 -17.80228 -17.65222 -17.52729 -17.01844 -16.29810 -15.78701 -15.47909 -14.95589 -14.68039 -14.55515 -14.17446 -14.13273 -13.98691 -13.85415 -13.49779 -13.46766 -13.34323 -12.95802 -12.80155 -12.53852 -12.50614 -12.28374 -12.19693 -12.03251 -11.82357 -11.37513 -11.36683 -11.25336 -11.19793 -10.93416 -10.69551 -10.41293 -10.10990 -9.80437 -9.66346 -9.25817 -9.08480 -9.00887 -8.53831 -7.38757 -5.85767 -3.23260 0.76912 1.07376 2.65616 2.93549 3.32347 3.33446 3.36796 3.41703 3.44742 3.81473 4.19056 4.37585 4.51709 4.51877 4.56192 4.57437 4.66232 4.86234 4.97603 5.05377 5.08561 5.13859 5.20230 5.32068 5.35522 5.45424 5.51161 5.55642 5.62925 5.69351 5.75840 5.83565 5.95530 5.96621 6.03563 6.14812 6.23697 6.30128 6.46078 6.48472 6.55146 6.58900 6.74685 7.62274 7.87913 8.21806 8.32606 9.09104 9.81805 9.99877 11.31842 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.002150 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.043176 B =13020.700482 C =13453.444125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 H 0.073 0.927 4 C 0.181 3.819 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.249 4.249 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.534 6.534 20 C -0.103 4.103 21 C -0.042 4.042 22 C -0.106 4.106 23 C -0.085 4.085 24 C -0.175 4.175 25 C 0.315 3.685 26 F -0.200 7.200 27 F -0.200 7.200 28 C -0.085 4.085 29 C -0.106 4.106 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -6.135 -28.886 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.091 0.909 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.411 6.411 20 C -0.143 4.143 21 C -0.042 4.042 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.176 4.176 25 C 0.261 3.739 26 F -0.181 7.181 27 F -0.181 7.181 28 C -0.103 4.103 29 C -0.124 4.124 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.149 0.851 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.893 -5.658 -28.840 29.403 hybrid contribution 0.433 1.342 -0.080 1.412 sum -0.460 -4.316 -28.921 29.244 Atomic orbital electron populations 1.22050 0.94658 1.01858 1.02768 1.21960 0.94692 0.96696 0.84662 0.90927 1.21222 0.93891 0.91338 0.86560 0.90541 1.42709 1.80835 1.11071 1.03389 1.19024 1.39048 0.99011 0.80749 0.88985 1.24666 1.01207 0.97784 0.95079 1.69691 1.53809 1.35231 0.98919 0.86591 0.78500 0.86215 0.77453 1.20903 1.21627 1.20318 1.23573 1.00945 1.02000 0.93135 1.22466 0.94666 0.88323 0.97189 1.48595 1.52320 1.28694 1.04902 1.20018 0.80884 0.85439 0.82156 1.90728 1.39574 1.27612 1.83179 1.20721 1.03027 1.00114 0.90389 1.19473 0.94640 0.95855 0.94233 1.20975 0.95958 1.00460 0.94979 1.20850 0.98649 0.95415 0.95392 1.20377 0.98312 1.01515 0.97396 1.20304 0.75515 0.80529 0.97536 1.92998 1.31223 1.96621 1.97302 1.92998 1.87371 1.40374 1.97388 1.20854 0.95546 0.98610 0.95276 1.20988 1.00199 0.96168 0.95012 0.92855 0.91128 0.91933 0.80373 0.92912 0.90743 0.90049 0.91362 0.91172 0.87784 0.87756 0.85429 0.85147 0.86204 0.85147 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.11 37.16 0.34 -2.10 16 2 C 0.12 2.01 3.20 -66.95 -0.21 1.80 16 3 H 0.07 1.32 7.72 -51.93 -0.40 0.92 16 4 C 0.18 3.20 3.14 -66.10 -0.21 2.99 16 5 H 0.08 1.38 7.80 -51.93 -0.41 0.97 16 6 N -0.74 -16.49 5.03 -51.65 -0.26 -16.75 16 7 C -0.25 -6.65 10.44 -15.06 -0.16 -6.80 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 11 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 15 C -0.16 -2.27 6.78 -24.47 -0.17 -2.43 16 16 C 0.10 1.07 6.70 -2.41 -0.02 1.05 16 17 N -0.61 -8.31 3.06 -162.88 -0.50 -8.81 16 18 C 0.53 7.16 7.63 -10.98 -0.08 7.08 16 19 O -0.53 -9.36 15.06 5.55 0.08 -9.28 16 20 C -0.10 -0.94 4.83 -29.03 -0.14 -1.08 16 21 C -0.04 -0.42 4.37 -104.63 -0.46 -0.88 16 22 C -0.11 -1.01 9.70 -39.58 -0.38 -1.40 16 23 C -0.08 -0.78 9.40 -39.58 -0.37 -1.15 16 24 C -0.18 -1.61 5.74 -104.62 -0.60 -2.21 16 25 C 0.31 2.45 5.65 36.01 0.20 2.65 16 26 F -0.20 -1.92 16.48 2.25 0.04 -1.88 16 27 F -0.20 -1.94 16.48 2.25 0.04 -1.90 16 28 C -0.08 -0.79 9.40 -39.58 -0.37 -1.16 16 29 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.03 6.87 -51.93 -0.36 0.68 16 33 H 0.36 8.18 5.42 -40.82 -0.22 7.96 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.60 7.49 -51.93 -0.39 0.21 16 39 H 0.10 0.75 7.80 -51.93 -0.41 0.34 16 40 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.13 0.98 7.60 -52.49 -0.40 0.58 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.13 1.01 7.60 -52.49 -0.40 0.61 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -33.44 377.59 -8.33 -41.77 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.37 Total: 6.68 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.11 Total: -4.90 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.02 Total: -53.11 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.07 Total: -3.78 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.44 -8.33 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986546420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.172 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds