Wall clock time and date at job start Tue Mar 31 2020 20:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87396 * 2 1 4 4 C 1.54322 * 110.01049 * 121.10082 * 2 1 3 5 5 H 1.08992 * 110.72150 * 23.13580 * 4 2 1 6 6 N 1.46500 * 110.71680 * 260.04275 * 4 2 1 7 7 C 1.36939 * 119.99868 * 155.00050 * 6 4 2 8 8 H 1.08004 * 119.99940 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00071 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00202 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00261 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47017 * 89.99313 * 11 9 7 13 13 H 1.48493 * 109.47054 * 210.00097 * 11 9 7 14 14 H 1.48507 * 109.46567 * 329.99515 * 11 9 7 15 15 C 1.55156 * 102.94117 * 141.68288 * 4 2 1 16 16 C 1.55123 * 101.48498 * 324.33032 * 15 4 2 17 17 N 1.47025 * 109.87972 * 238.98540 * 2 1 3 18 18 C 1.34777 * 125.65000 * 61.45406 * 17 2 1 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50702 * 119.99928 * 180.27553 * 18 17 2 21 21 C 1.50700 * 109.46869 * 179.72354 * 20 18 17 22 22 C 1.38233 * 119.99587 * 269.72348 * 21 20 18 23 23 C 1.38237 * 119.99768 * 179.79130 * 22 21 20 24 24 C 1.38234 * 119.99719 * 0.44122 * 23 22 21 25 25 C 1.50708 * 120.00036 * 179.83508 * 24 23 22 26 26 F 1.39899 * 109.46945 * 29.97736 * 25 24 23 27 27 F 1.39894 * 109.47206 * 149.97408 * 25 24 23 28 28 C 1.38238 * 120.00465 * 359.81318 * 24 23 22 29 29 C 1.38233 * 119.99980 * 90.00014 * 21 20 18 30 30 H 1.08997 * 109.47236 * 179.56249 * 1 2 3 31 31 H 1.09007 * 109.46934 * 299.56438 * 1 2 3 32 32 H 1.09002 * 109.47351 * 59.56109 * 1 2 3 33 33 H 0.97003 * 120.00605 * 334.99958 * 6 4 2 34 34 H 0.96995 * 120.00312 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00556 * 82.57167 * 15 4 2 36 36 H 1.08999 * 111.00040 * 206.38572 * 15 4 2 37 37 H 1.09004 * 110.49673 * 278.45187 * 16 15 4 38 38 H 1.09004 * 110.34018 * 156.06510 * 16 15 4 39 39 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 40 40 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 41 41 H 1.07996 * 120.00354 * 359.97438 * 22 21 20 42 42 H 1.08002 * 120.00300 * 180.27391 * 23 22 21 43 43 H 1.09000 * 109.46778 * 269.98181 * 25 24 23 44 44 H 1.07994 * 120.00177 * 180.02562 * 28 24 23 45 45 H 1.08000 * 120.00213 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 1.3092 -1.4449 1.6197 6 7 2.4580 0.1970 2.2863 7 6 2.4634 -0.1942 3.5986 8 1 2.1731 -1.2003 3.8634 9 6 2.8428 0.7019 4.5885 10 7 2.8475 0.3261 5.8499 11 14 3.3456 2.4418 4.1305 12 1 2.1492 3.3213 4.1397 13 1 4.3379 2.9453 5.1137 14 1 3.9494 2.4415 2.7737 15 6 3.2917 -1.5108 0.6893 16 6 2.8130 -1.8793 -0.7394 17 7 2.0299 -0.7124 -1.1850 18 6 1.8049 -0.3602 -2.4663 19 8 1.1379 0.6212 -2.7172 20 6 2.3763 -1.1897 -3.5872 21 6 1.9761 -0.5898 -4.9105 22 6 0.8058 -0.9925 -5.5261 23 6 0.4365 -0.4391 -6.7378 24 6 1.2421 0.5103 -7.3382 25 6 0.8414 1.1110 -8.6611 26 9 -0.5540 1.1308 -8.7606 27 9 1.3336 2.4176 -8.7482 28 6 2.4151 0.9092 -6.7251 29 6 2.7822 0.3589 -5.5113 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5071 0.8939 32 1 -0.3634 0.5206 -0.8860 33 1 2.7191 1.1004 2.0485 34 1 3.1123 0.9524 6.5416 35 1 4.1681 -0.8634 0.6564 36 1 3.4924 -2.4070 1.2762 37 1 2.1851 -2.7701 -0.7137 38 1 3.6681 -2.0359 -1.3970 39 1 3.4635 -1.2058 -3.5095 40 1 1.9921 -2.2073 -3.5185 41 1 0.1785 -1.7373 -5.0591 42 1 -0.4801 -0.7504 -7.2168 43 1 1.2550 0.5119 -9.4723 44 1 3.0443 1.6512 -7.1940 45 1 3.6986 0.6705 -5.0322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986546420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:23 Heat of formation + Delta-G solvation = -115.678553 kcal Electronic energy + Delta-G solvation = -28642.702560 eV Core-core repulsion = 24295.114971 eV Total energy + Delta-G solvation = -4347.587589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.99396 -48.02953 -41.41979 -40.22231 -38.72045 -36.01514 -34.48428 -33.54025 -32.30726 -31.95852 -31.38314 -29.61119 -26.89944 -26.16876 -24.48280 -23.78687 -23.76019 -22.18025 -21.65142 -20.14462 -19.44814 -18.59956 -18.41361 -18.20007 -18.10340 -17.40568 -16.65646 -16.55781 -16.07688 -15.85798 -15.70046 -15.39681 -15.16082 -14.84900 -14.74466 -14.65412 -14.57126 -14.17219 -14.11207 -14.00996 -13.76652 -13.46706 -13.37852 -13.27111 -13.09375 -12.93197 -12.86349 -12.67368 -12.52737 -12.14910 -12.05960 -12.00988 -11.83588 -11.82789 -11.53764 -11.00279 -10.86882 -9.93186 -9.78478 -9.65389 -9.32634 -8.03163 -5.36882 0.08208 0.39867 1.36834 1.38957 1.45122 1.65524 1.94340 2.46392 2.61933 2.84799 3.26367 3.27013 3.51994 3.56147 3.56359 3.69140 3.82460 3.94759 3.97130 4.05854 4.07086 4.14382 4.34927 4.36674 4.41644 4.42397 4.47405 4.59079 4.66663 4.68634 4.76186 4.87926 4.93106 5.02550 5.04946 5.21590 5.24675 5.27844 5.34983 5.37437 5.44455 5.55559 5.76803 5.91572 6.20638 6.60026 7.04746 7.18728 7.80364 7.97592 9.17648 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.002150 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.043176 B =13020.700482 C =13453.444125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.130 3.870 3 H 0.049 0.951 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.745 5.745 7 C -0.223 4.223 8 H 0.067 0.933 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.945 3.055 12 H -0.284 1.284 13 H -0.296 1.296 14 H -0.257 1.257 15 C -0.150 4.150 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.580 6.580 20 C -0.092 4.092 21 C -0.057 4.057 22 C -0.115 4.115 23 C -0.095 4.095 24 C -0.184 4.184 25 C 0.311 3.689 26 F -0.212 7.212 27 F -0.213 7.213 28 C -0.096 4.096 29 C -0.119 4.119 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.362 0.638 34 H 0.257 0.743 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.140 0.860 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -7.323 -31.715 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 H 0.067 0.933 4 C 0.062 3.938 5 H 0.090 0.910 6 N -0.387 5.387 7 C -0.354 4.354 8 H 0.085 0.915 9 C -0.251 4.251 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.210 1.210 13 H -0.223 1.223 14 H -0.181 1.181 15 C -0.190 4.190 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.460 6.460 20 C -0.131 4.131 21 C -0.058 4.058 22 C -0.133 4.133 23 C -0.113 4.113 24 C -0.184 4.184 25 C 0.258 3.742 26 F -0.194 7.194 27 F -0.194 7.194 28 C -0.114 4.114 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.196 0.804 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.158 0.842 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.081 -6.888 -31.743 32.482 hybrid contribution 0.115 1.638 0.738 1.800 sum 0.034 -5.251 -31.005 31.446 Atomic orbital electron populations 1.21953 0.94483 1.02447 1.01601 1.21631 0.94753 0.95636 0.85477 0.93274 1.21433 0.95442 0.90861 0.86018 0.90996 1.42720 1.81208 1.11987 1.02815 1.18995 1.36172 0.97616 0.82609 0.91480 1.25377 1.02776 1.01854 0.95052 1.69849 1.56441 1.36591 1.00087 0.85557 0.77869 0.81350 0.77851 1.21027 1.22257 1.18144 1.23408 0.98699 1.01337 0.95598 1.22619 0.96108 0.87835 0.95157 1.48643 1.52416 1.29089 1.04295 1.20847 0.79975 0.85121 0.82609 1.90714 1.41697 1.29817 1.83780 1.20765 1.04382 1.00340 0.87598 1.19670 0.94981 0.96289 0.94820 1.21242 0.96081 1.00824 0.95188 1.21085 0.99136 0.95500 0.95554 1.20609 0.98286 1.01495 0.98052 1.20743 0.74885 0.80227 0.98362 1.92971 1.32388 1.96640 1.97353 1.92969 1.87476 1.41537 1.97445 1.21065 0.95967 0.98911 0.95443 1.21232 1.00785 0.96293 0.95335 0.91352 0.92430 0.92899 0.80437 0.93378 0.91801 0.89607 0.88775 0.87311 0.85163 0.84727 0.84102 0.83960 0.81969 0.84173 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.11 71.98 0.66 -3.87 16 2 C 0.13 4.08 3.20 45.34 0.15 4.23 16 3 H 0.05 1.78 7.72 -2.38 -0.02 1.76 16 4 C 0.17 5.87 3.14 46.18 0.15 6.02 16 5 H 0.07 2.53 7.80 -2.39 -0.02 2.51 16 6 N -0.75 -33.02 5.03 -317.34 -1.60 -34.62 16 7 C -0.22 -12.06 10.44 84.03 0.88 -11.18 16 8 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 10 N -0.98 -61.28 13.97 21.65 0.30 -60.97 16 11 Si 0.95 45.24 27.74 68.60 1.90 47.15 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 14 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 15 C -0.15 -4.00 6.78 32.06 0.22 -3.78 16 16 C 0.10 1.85 6.70 86.93 0.58 2.44 16 17 N -0.61 -14.89 3.06 -787.61 -2.41 -17.31 16 18 C 0.52 12.87 7.63 87.66 0.67 13.54 16 19 O -0.58 -19.73 15.06 -3.04 -0.05 -19.78 16 20 C -0.09 -1.31 4.83 29.10 0.14 -1.17 16 21 C -0.06 -1.01 4.37 -19.87 -0.09 -1.10 16 22 C -0.12 -1.97 9.70 22.27 0.22 -1.75 16 23 C -0.09 -1.58 9.40 22.27 0.21 -1.37 16 24 C -0.18 -3.09 5.74 -19.86 -0.11 -3.21 16 25 C 0.31 4.30 5.65 71.24 0.40 4.71 16 26 F -0.21 -3.80 16.48 44.97 0.74 -3.06 16 27 F -0.21 -3.88 16.48 44.97 0.74 -3.13 16 28 C -0.10 -1.65 9.40 22.27 0.21 -1.45 16 29 C -0.12 -2.11 9.70 22.27 0.22 -1.90 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 1.73 6.87 -2.39 -0.02 1.72 16 33 H 0.36 16.08 5.42 -92.71 -0.50 15.57 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.11 1.20 7.49 -2.38 -0.02 1.18 16 39 H 0.13 1.20 7.80 -2.38 -0.02 1.19 16 40 H 0.13 1.13 8.08 -2.39 -0.02 1.11 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.14 1.91 7.60 -2.91 -0.02 1.88 16 43 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.14 2.01 7.60 -2.91 -0.02 1.98 16 45 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -75.31 377.59 5.03 -70.28 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.45 Total: 24.19 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 4.95 Total: -2.74 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.71 Total: -112.90 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.48 Total: -6.19 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal Total: -75.31 5.03 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986546420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.403 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds