Wall clock time and date at job start Tue Mar 31 2020 20:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.99719 * 2 1 4 4 C 1.54323 * 109.87948 * 238.91124 * 2 1 3 5 5 H 1.09006 * 110.72211 * 336.93068 * 4 2 1 6 6 N 1.46496 * 110.72334 * 100.02373 * 4 2 1 7 7 C 1.36934 * 120.00548 * 202.55611 * 6 4 2 8 8 H 1.08004 * 119.99288 * 0.02562 * 7 6 4 9 9 C 1.38805 * 120.00389 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00257 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55154 * 103.10002 * 218.47834 * 4 2 1 16 16 C 1.54911 * 101.58360 * 35.41351 * 15 4 2 17 17 N 1.47317 * 110.06461 * 121.17827 * 2 1 3 18 18 C 1.34774 * 125.61537 * 298.24437 * 17 2 1 19 19 O 1.21283 * 119.99870 * 359.83648 * 18 17 2 20 20 C 1.50694 * 119.99958 * 179.83790 * 18 17 2 21 21 C 1.53004 * 109.47111 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.47252 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.98291 * 264.72316 * 22 21 20 24 24 C 1.38188 * 120.04794 * 179.76596 * 23 22 21 25 25 C 1.38494 * 120.02713 * 0.51026 * 24 23 22 26 26 F 1.35094 * 120.01537 * 179.76967 * 25 24 23 27 27 C 1.38400 * 119.97096 * 359.74337 * 25 24 23 28 28 C 1.38439 * 119.94923 * 0.02562 * 27 25 24 29 29 F 1.35104 * 120.00986 * 180.02562 * 28 27 25 30 30 H 1.09005 * 109.47542 * 181.09104 * 1 2 3 31 31 H 1.09002 * 109.46833 * 301.09371 * 1 2 3 32 32 H 1.09001 * 109.47088 * 61.08983 * 1 2 3 33 33 H 0.96999 * 119.99694 * 22.56135 * 6 4 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 35 35 H 1.09002 * 111.00712 * 153.48485 * 15 4 2 36 36 H 1.08995 * 111.00966 * 277.29898 * 15 4 2 37 37 H 1.09001 * 110.36954 * 81.82747 * 16 15 4 38 38 H 1.08999 * 110.36850 * 204.15327 * 16 15 4 39 39 H 1.09005 * 109.47588 * 299.99787 * 20 18 17 40 40 H 1.09000 * 109.47095 * 60.00483 * 20 18 17 41 41 H 1.08999 * 109.46976 * 299.99657 * 21 20 18 42 42 H 1.08999 * 109.47194 * 60.00089 * 21 20 18 43 43 H 1.07999 * 119.97870 * 0.02562 * 23 22 21 44 44 H 1.08005 * 119.98873 * 180.25348 * 24 23 22 45 45 H 1.08007 * 120.02369 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3038 -1.4435 -1.6203 6 7 2.4553 0.1962 -2.2876 7 6 2.5062 -0.2086 -3.5947 8 1 2.2506 -1.2251 -3.8554 9 6 2.8863 0.6872 -4.5845 10 7 2.9346 0.2982 -5.8410 11 14 3.3277 2.4454 -4.1335 12 1 2.1077 3.2906 -4.1840 13 1 3.8952 2.4769 -2.7616 14 1 4.3309 2.9665 -5.0964 15 6 3.2869 -1.5177 -0.6960 16 6 2.8161 -1.8832 0.7338 17 7 2.0354 -0.7164 1.1839 18 6 1.8177 -0.3643 2.4665 19 8 1.1574 0.6205 2.7212 20 6 2.3947 -1.1944 3.5840 21 6 2.0025 -0.5812 4.9298 22 6 2.5800 -1.4109 6.0474 23 6 1.8116 -2.3897 6.6493 24 6 2.3414 -3.1546 7.6710 25 6 3.6396 -2.9342 8.1001 26 9 4.1558 -3.6790 9.1020 27 6 4.4081 -1.9510 7.5017 28 6 3.8778 -1.1886 6.4750 29 9 4.6271 -0.2288 5.8896 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8800 32 1 -0.3633 0.4968 -0.8996 33 1 2.6846 1.1092 -2.0533 34 1 3.1999 0.9244 -6.5327 35 1 3.4810 -2.4144 -1.2845 36 1 4.1665 -0.8747 -0.6659 37 1 2.1880 -2.7737 0.7104 38 1 3.6743 -2.0403 1.3873 39 1 2.0055 -2.2106 3.5202 40 1 3.4811 -1.2153 3.4975 41 1 2.3921 0.4348 4.9934 42 1 0.9162 -0.5599 5.0166 43 1 0.7978 -2.5596 6.3181 44 1 1.7415 -3.9219 8.1378 45 1 5.4205 -1.7781 7.8360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987292392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:27 Heat of formation + Delta-G solvation = -91.124022 kcal Electronic energy + Delta-G solvation = -28625.158356 eV Core-core repulsion = 24278.635532 eV Total energy + Delta-G solvation = -4346.522824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.44597 -49.37867 -40.20583 -39.39772 -37.64840 -34.31771 -34.25144 -31.84197 -31.33193 -31.05785 -30.12352 -29.11528 -25.40106 -25.16469 -23.67733 -22.75161 -22.59074 -21.55974 -20.24417 -18.86738 -18.64285 -17.70688 -17.63010 -17.16339 -16.44372 -16.27645 -16.26739 -15.72675 -15.56736 -15.33353 -14.91054 -14.76587 -14.40080 -14.17115 -13.93133 -13.53025 -13.46577 -13.19829 -12.96586 -12.72310 -12.64937 -12.32230 -12.17530 -12.07482 -11.97264 -11.88940 -11.75410 -11.35043 -11.30166 -11.21654 -10.92287 -10.66549 -10.39930 -10.08939 -9.74882 -9.64828 -9.55000 -9.04326 -9.00242 -8.52301 -7.37223 -5.84594 -3.21975 0.44686 0.51425 2.68492 2.81412 3.06488 3.34294 3.37857 3.40366 3.42653 3.94036 4.08341 4.13273 4.35185 4.52967 4.60705 4.61424 4.78330 4.85558 4.90343 5.07547 5.16335 5.26190 5.28053 5.33397 5.38025 5.45040 5.46959 5.49702 5.55486 5.58383 5.63980 5.77423 5.82092 5.85560 5.88538 5.96954 6.16947 6.28436 6.31086 6.47847 6.49283 6.57136 6.77153 7.65022 7.89247 8.23108 8.33836 9.10447 9.83155 10.01363 11.33035 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.002119 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.281215 B =13213.178604 C =13340.796046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.073 0.927 4 C 0.181 3.819 5 H 0.075 0.925 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.277 1.277 14 H -0.290 1.290 15 C -0.155 4.155 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.064 4.064 22 C -0.123 4.123 23 C -0.057 4.057 24 C -0.161 4.161 25 C 0.124 3.876 26 F -0.133 7.133 27 C -0.191 4.191 28 C 0.134 3.866 29 F -0.126 7.126 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -8.582 28.461 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.093 0.907 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.203 1.203 14 H -0.216 1.216 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.422 6.422 20 C -0.171 4.171 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.075 4.075 24 C -0.180 4.180 25 C 0.104 3.896 26 F -0.111 7.111 27 C -0.210 4.210 28 C 0.114 3.886 29 F -0.104 7.104 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.924 -8.138 28.426 29.582 hybrid contribution 0.865 1.182 0.271 1.490 sum -0.059 -6.956 28.696 29.527 Atomic orbital electron populations 1.22042 0.94591 1.01871 1.02740 1.21980 0.94651 0.96663 0.84703 0.90848 1.21224 0.93915 0.91322 0.86586 0.90725 1.42705 1.81793 1.09701 1.03881 1.19015 1.39402 0.98188 0.81136 0.89000 1.24665 1.01263 0.97730 0.95121 1.69696 1.53842 1.34938 0.99214 0.86589 0.78321 0.86365 0.77478 1.20915 1.20298 1.21641 1.23530 1.00995 1.02000 0.93108 1.22409 0.94738 0.88281 0.97127 1.48674 1.52181 1.28568 1.05012 1.20165 0.80526 0.85375 0.82386 1.90688 1.40587 1.27737 1.83233 1.21616 1.02698 1.00248 0.92540 1.20289 1.02102 0.98489 0.89323 1.20091 0.92811 0.99514 1.00026 1.20866 1.00119 0.92748 0.93814 1.21234 0.94273 1.02701 0.99796 1.17311 0.92459 0.91848 0.87958 1.91537 1.87060 1.74687 1.57833 1.21052 1.02464 0.98365 0.99147 1.17188 0.89320 0.88552 0.93540 1.91558 1.75616 1.60665 1.82581 0.92828 0.91935 0.91113 0.80376 0.92931 0.90060 0.90746 0.91426 0.91196 0.88682 0.88914 0.89505 0.89209 0.83652 0.83905 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.11 37.16 0.34 -2.04 16 2 C 0.12 2.02 3.22 -66.79 -0.21 1.81 16 3 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 4 C 0.18 3.23 3.12 -66.10 -0.21 3.02 16 5 H 0.07 1.35 7.81 -51.93 -0.41 0.95 16 6 N -0.74 -16.62 5.04 -51.66 -0.26 -16.88 16 7 C -0.25 -6.65 10.45 -15.06 -0.16 -6.81 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 11 Si 0.88 21.72 27.74 -169.99 -4.71 17.00 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 C -0.16 -2.35 6.77 -24.58 -0.17 -2.51 16 16 C 0.10 1.14 6.69 -2.53 -0.02 1.12 16 17 N -0.61 -8.50 3.08 -162.80 -0.50 -9.00 16 18 C 0.53 7.17 7.65 -10.99 -0.08 7.09 16 19 O -0.54 -9.19 15.06 5.56 0.08 -9.11 16 20 C -0.13 -1.23 4.69 -27.88 -0.13 -1.36 16 21 C -0.06 -0.58 4.41 -27.88 -0.12 -0.70 16 22 C -0.12 -0.95 5.14 -104.55 -0.54 -1.49 16 23 C -0.06 -0.34 9.67 -39.60 -0.38 -0.72 16 24 C -0.16 -0.95 10.02 -39.51 -0.40 -1.35 16 25 C 0.12 0.91 7.30 -39.43 -0.29 0.62 16 26 F -0.13 -1.07 17.27 2.25 0.04 -1.04 16 27 C -0.19 -1.45 10.01 -39.45 -0.39 -1.84 16 28 C 0.13 1.14 7.24 -39.43 -0.29 0.86 16 29 F -0.13 -1.27 16.57 2.25 0.04 -1.23 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.99 6.94 -51.93 -0.36 0.63 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.36 8.22 5.40 -40.82 -0.22 8.00 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.67 7.47 -51.93 -0.39 0.28 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.83 7.85 -51.93 -0.41 0.42 16 41 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 42 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 43 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 45 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -31.98 378.75 -8.37 -40.35 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.40 Total: 5.98 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.14 Total: -4.16 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.01 Total: -53.51 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.98 -8.37 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987292392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.772 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds