Wall clock time and date at job start Tue Mar 31 2020 20:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.99719 * 2 1 4 4 C 1.54323 * 109.87948 * 238.91124 * 2 1 3 5 5 H 1.09006 * 110.72211 * 336.93068 * 4 2 1 6 6 N 1.46496 * 110.72334 * 100.02373 * 4 2 1 7 7 C 1.36934 * 120.00548 * 202.55611 * 6 4 2 8 8 H 1.08004 * 119.99288 * 0.02562 * 7 6 4 9 9 C 1.38805 * 120.00389 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00257 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55154 * 103.10002 * 218.47834 * 4 2 1 16 16 C 1.54911 * 101.58360 * 35.41351 * 15 4 2 17 17 N 1.47317 * 110.06461 * 121.17827 * 2 1 3 18 18 C 1.34774 * 125.61537 * 298.24437 * 17 2 1 19 19 O 1.21283 * 119.99870 * 359.83648 * 18 17 2 20 20 C 1.50694 * 119.99958 * 179.83790 * 18 17 2 21 21 C 1.53004 * 109.47111 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.47252 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.98291 * 264.72316 * 22 21 20 24 24 C 1.38188 * 120.04794 * 179.76596 * 23 22 21 25 25 C 1.38494 * 120.02713 * 0.51026 * 24 23 22 26 26 F 1.35094 * 120.01537 * 179.76967 * 25 24 23 27 27 C 1.38400 * 119.97096 * 359.74337 * 25 24 23 28 28 C 1.38439 * 119.94923 * 0.02562 * 27 25 24 29 29 F 1.35104 * 120.00986 * 180.02562 * 28 27 25 30 30 H 1.09005 * 109.47542 * 181.09104 * 1 2 3 31 31 H 1.09002 * 109.46833 * 301.09371 * 1 2 3 32 32 H 1.09001 * 109.47088 * 61.08983 * 1 2 3 33 33 H 0.96999 * 119.99694 * 22.56135 * 6 4 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 35 35 H 1.09002 * 111.00712 * 153.48485 * 15 4 2 36 36 H 1.08995 * 111.00966 * 277.29898 * 15 4 2 37 37 H 1.09001 * 110.36954 * 81.82747 * 16 15 4 38 38 H 1.08999 * 110.36850 * 204.15327 * 16 15 4 39 39 H 1.09005 * 109.47588 * 299.99787 * 20 18 17 40 40 H 1.09000 * 109.47095 * 60.00483 * 20 18 17 41 41 H 1.08999 * 109.46976 * 299.99657 * 21 20 18 42 42 H 1.08999 * 109.47194 * 60.00089 * 21 20 18 43 43 H 1.07999 * 119.97870 * 0.02562 * 23 22 21 44 44 H 1.08005 * 119.98873 * 180.25348 * 24 23 22 45 45 H 1.08007 * 120.02369 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3038 -1.4435 -1.6203 6 7 2.4553 0.1962 -2.2876 7 6 2.5062 -0.2086 -3.5947 8 1 2.2506 -1.2251 -3.8554 9 6 2.8863 0.6872 -4.5845 10 7 2.9346 0.2982 -5.8410 11 14 3.3277 2.4454 -4.1335 12 1 2.1077 3.2906 -4.1840 13 1 3.8952 2.4769 -2.7616 14 1 4.3309 2.9665 -5.0964 15 6 3.2869 -1.5177 -0.6960 16 6 2.8161 -1.8832 0.7338 17 7 2.0354 -0.7164 1.1839 18 6 1.8177 -0.3643 2.4665 19 8 1.1574 0.6205 2.7212 20 6 2.3947 -1.1944 3.5840 21 6 2.0025 -0.5812 4.9298 22 6 2.5800 -1.4109 6.0474 23 6 1.8116 -2.3897 6.6493 24 6 2.3414 -3.1546 7.6710 25 6 3.6396 -2.9342 8.1001 26 9 4.1558 -3.6790 9.1020 27 6 4.4081 -1.9510 7.5017 28 6 3.8778 -1.1886 6.4750 29 9 4.6271 -0.2288 5.8896 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8800 32 1 -0.3633 0.4968 -0.8996 33 1 2.6846 1.1092 -2.0533 34 1 3.1999 0.9244 -6.5327 35 1 3.4810 -2.4144 -1.2845 36 1 4.1665 -0.8747 -0.6659 37 1 2.1880 -2.7737 0.7104 38 1 3.6743 -2.0403 1.3873 39 1 2.0055 -2.2106 3.5202 40 1 3.4811 -1.2153 3.4975 41 1 2.3921 0.4348 4.9934 42 1 0.9162 -0.5599 5.0166 43 1 0.7978 -2.5596 6.3181 44 1 1.7415 -3.9219 8.1378 45 1 5.4205 -1.7781 7.8360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987292392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:26 Heat of formation + Delta-G solvation = -109.274333 kcal Electronic energy + Delta-G solvation = -28625.945413 eV Core-core repulsion = 24278.635532 eV Total energy + Delta-G solvation = -4347.309881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.04659 -50.00487 -41.29951 -40.00321 -38.87631 -36.01612 -35.00693 -33.57804 -32.35280 -31.83882 -31.40817 -30.05115 -26.90187 -25.96490 -24.44532 -24.19007 -23.59650 -22.32350 -21.66461 -20.09662 -19.43735 -19.21178 -18.29013 -18.18875 -17.48156 -17.00547 -16.86249 -16.50784 -16.41124 -16.26733 -16.21934 -15.89283 -15.51169 -15.22856 -14.81540 -14.70123 -14.67017 -14.38311 -14.22515 -13.73272 -13.57094 -13.55600 -13.39935 -13.28141 -13.02505 -12.77515 -12.69311 -12.56082 -12.50898 -12.37242 -12.15179 -12.05458 -11.96786 -11.82412 -11.54092 -10.99294 -10.81695 -10.07009 -9.66272 -9.61861 -9.32718 -8.02954 -5.36699 -0.09658 0.01286 1.37451 1.38819 1.45299 1.65125 1.93354 2.36254 2.46606 2.86158 3.26200 3.34973 3.43595 3.53174 3.59783 3.66112 3.82869 3.91032 3.96314 4.08854 4.13916 4.17509 4.27889 4.35056 4.37954 4.47328 4.58304 4.67905 4.70205 4.78511 4.84535 4.90567 4.93551 4.95259 5.03612 5.08119 5.15076 5.23148 5.23686 5.30588 5.33832 5.43546 5.76752 5.76994 6.20829 6.59320 7.04859 7.17160 7.80468 7.97819 9.17824 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.002119 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.281215 B =13213.178604 C =13340.796046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.129 3.871 3 H 0.050 0.950 4 C 0.172 3.828 5 H 0.073 0.927 6 N -0.745 5.745 7 C -0.223 4.223 8 H 0.067 0.933 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.946 3.054 12 H -0.282 1.282 13 H -0.258 1.258 14 H -0.296 1.296 15 C -0.151 4.151 16 C 0.106 3.894 17 N -0.612 5.612 18 C 0.523 3.477 19 O -0.583 6.583 20 C -0.121 4.121 21 C -0.059 4.059 22 C -0.124 4.124 23 C -0.049 4.049 24 C -0.152 4.152 25 C 0.113 3.887 26 F -0.139 7.139 27 C -0.195 4.195 28 C 0.114 3.886 29 F -0.141 7.141 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.362 0.638 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.173 0.827 44 H 0.167 0.833 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -10.104 31.191 32.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.024 3.976 3 H 0.068 0.932 4 C 0.063 3.937 5 H 0.091 0.909 6 N -0.388 5.388 7 C -0.354 4.354 8 H 0.085 0.915 9 C -0.251 4.251 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.208 1.208 13 H -0.183 1.183 14 H -0.223 1.223 15 C -0.191 4.191 16 C -0.016 4.016 17 N -0.346 5.346 18 C 0.314 3.686 19 O -0.463 6.463 20 C -0.160 4.160 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.067 4.067 24 C -0.170 4.170 25 C 0.093 3.907 26 F -0.118 7.118 27 C -0.215 4.215 28 C 0.095 3.905 29 F -0.120 7.120 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.196 0.804 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.190 0.810 44 H 0.185 0.815 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.271 -9.695 31.230 32.725 hybrid contribution 0.922 1.560 -0.496 1.879 sum -0.349 -8.134 30.734 31.794 Atomic orbital electron populations 1.21946 0.93968 1.02601 1.01842 1.21689 0.95070 0.95537 0.85272 0.93165 1.21432 0.95287 0.90892 0.86122 0.90935 1.42720 1.82123 1.10580 1.03341 1.18987 1.36581 0.96849 0.82935 0.91460 1.25377 1.02739 1.01863 0.95101 1.69853 1.56435 1.36287 1.00375 0.85554 0.77808 0.81457 0.77794 1.20800 1.18335 1.22306 1.23372 0.98862 1.01342 0.95547 1.22523 0.96030 0.88042 0.94998 1.48740 1.52327 1.28950 1.04548 1.20947 0.79768 0.85152 0.82761 1.90676 1.42364 1.29540 1.83721 1.21640 1.02946 1.00816 0.90612 1.20183 1.02262 0.97533 0.89733 1.20034 0.92568 0.99976 0.99979 1.21145 1.00927 0.91540 0.93076 1.21525 0.93638 1.02672 0.99182 1.17505 0.93184 0.91927 0.88049 1.91522 1.87276 1.74830 1.58155 1.21132 1.02947 0.98412 0.98999 1.17382 0.89830 0.88930 0.94362 1.91518 1.76095 1.61393 1.82946 0.91254 0.92547 0.92233 0.80445 0.93382 0.89637 0.92121 0.88646 0.88131 0.85512 0.88049 0.91858 0.88790 0.80961 0.81506 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.11 71.98 0.66 -3.68 16 2 C 0.13 4.07 3.22 45.29 0.15 4.22 16 3 H 0.05 1.82 7.70 -2.39 -0.02 1.81 16 4 C 0.17 5.96 3.12 46.18 0.14 6.10 16 5 H 0.07 2.56 7.81 -2.38 -0.02 2.54 16 6 N -0.75 -33.31 5.04 -317.34 -1.60 -34.91 16 7 C -0.22 -12.09 10.45 84.03 0.88 -11.21 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 10 N -0.98 -61.40 13.97 21.65 0.30 -61.10 16 11 Si 0.95 45.45 27.74 68.60 1.90 47.35 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.26 -11.45 6.52 99.48 0.65 -10.80 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 15 C -0.15 -4.24 6.77 31.99 0.22 -4.03 16 16 C 0.11 2.07 6.69 86.86 0.58 2.66 16 17 N -0.61 -15.51 3.08 -787.36 -2.42 -17.94 16 18 C 0.52 13.05 7.65 87.66 0.67 13.72 16 19 O -0.58 -19.11 15.06 -3.04 -0.05 -19.15 16 20 C -0.12 -1.86 4.69 29.85 0.14 -1.72 16 21 C -0.06 -0.94 4.41 29.85 0.13 -0.80 16 22 C -0.12 -1.61 5.14 -19.82 -0.10 -1.71 16 23 C -0.05 -0.40 9.67 22.26 0.22 -0.18 16 24 C -0.15 -1.27 10.02 22.32 0.22 -1.05 16 25 C 0.11 1.41 7.30 22.37 0.16 1.58 16 26 F -0.14 -2.01 17.27 44.97 0.78 -1.24 16 27 C -0.20 -2.70 10.01 22.36 0.22 -2.47 16 28 C 0.11 1.79 7.24 22.37 0.16 1.96 16 29 F -0.14 -2.77 16.57 44.97 0.74 -2.03 16 30 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 1.75 6.94 -2.39 -0.02 1.74 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.36 16.21 5.40 -92.71 -0.50 15.71 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.44 7.47 -2.39 -0.02 1.42 16 39 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.10 1.45 7.85 -2.39 -0.02 1.44 16 41 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 42 H 0.09 1.39 8.01 -2.39 -0.02 1.37 16 43 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 44 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 45 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -71.63 378.75 5.03 -66.60 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.45 Total: 21.96 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 4.92 Total: 0.44 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -3.72 Total: -113.94 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 1.52 Total: -3.26 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -71.63 5.03 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987292392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.670 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds