Wall clock time and date at job start Tue Mar 31 2020 20:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99869 * 2 1 4 4 C 1.54327 * 109.88160 * 238.89721 * 2 1 3 5 5 H 1.09001 * 110.71485 * 144.23737 * 4 2 1 6 6 N 1.46494 * 110.71803 * 21.14478 * 4 2 1 7 7 C 1.36945 * 119.99612 * 157.44097 * 6 4 2 8 8 H 1.07999 * 120.00077 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99637 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47102 * 119.99824 * 11 9 7 14 14 H 1.48500 * 109.47389 * 240.00173 * 11 9 7 15 15 C 1.55154 * 103.10110 * 262.68698 * 4 2 1 16 16 C 1.54907 * 101.58667 * 324.58823 * 15 4 2 17 17 N 1.47321 * 109.84597 * 121.29350 * 2 1 3 18 18 C 1.34771 * 125.61778 * 300.41952 * 17 2 1 19 19 O 1.21278 * 119.99874 * 0.20254 * 18 17 2 20 20 C 1.50703 * 120.00056 * 180.19989 * 18 17 2 21 21 C 1.53001 * 109.47106 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47106 * 180.02562 * 21 20 18 23 23 C 1.38231 * 119.98385 * 100.00148 * 22 21 20 24 24 C 1.38187 * 120.04662 * 179.97438 * 23 22 21 25 25 C 1.38497 * 120.02606 * 0.02647 * 24 23 22 26 26 F 1.35096 * 120.00959 * 179.97438 * 25 24 23 27 27 C 1.38393 * 119.97615 * 359.97438 * 25 24 23 28 28 C 1.38443 * 119.94754 * 359.73426 * 27 25 24 29 29 F 1.35096 * 120.01248 * 180.27170 * 28 27 25 30 30 H 1.09003 * 109.47567 * 181.09510 * 1 2 3 31 31 H 1.08999 * 109.47691 * 301.10038 * 1 2 3 32 32 H 1.09008 * 109.47175 * 61.10024 * 1 2 3 33 33 H 0.96995 * 120.00290 * 337.70988 * 6 4 2 34 34 H 0.97005 * 120.00046 * 179.97438 * 10 9 7 35 35 H 1.09003 * 111.00175 * 82.66703 * 15 4 2 36 36 H 1.09002 * 111.00205 * 206.47555 * 15 4 2 37 37 H 1.08997 * 110.37228 * 155.84462 * 16 15 4 38 38 H 1.08999 * 110.36708 * 278.17686 * 16 15 4 39 39 H 1.08999 * 109.47187 * 300.00379 * 20 18 17 40 40 H 1.09005 * 109.46926 * 60.00196 * 20 18 17 41 41 H 1.08998 * 109.47189 * 300.00505 * 21 20 18 42 42 H 1.09005 * 109.46770 * 60.00466 * 21 20 18 43 43 H 1.07998 * 119.97649 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.98543 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.02789 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7497 -1.2427 5 1 2.9639 -0.2815 -1.6200 6 7 1.0293 -0.8028 -2.2874 7 6 1.3926 -0.9892 -3.5946 8 1 2.4351 -1.0967 -3.8552 9 6 0.4208 -1.0400 -4.5845 10 7 -0.8497 -0.9085 -4.2669 11 14 0.9163 -1.2936 -6.3676 12 1 2.3938 -1.4120 -6.4587 13 1 0.2879 -2.5361 -6.8841 14 1 0.4613 -0.1351 -7.1775 15 6 2.3553 -2.1701 -0.6956 16 6 2.8597 -1.8526 0.7343 17 7 2.0301 -0.7198 1.1841 18 6 1.7748 -0.3937 2.4666 19 8 1.0758 0.5640 2.7212 20 6 2.3579 -1.2194 3.5844 21 6 1.9180 -0.6392 4.9301 22 6 2.5016 -1.4644 6.0479 23 6 3.6313 -1.0261 6.7130 24 6 4.1673 -1.7815 7.7385 25 6 3.5732 -2.9790 8.1007 26 9 4.0978 -3.7175 9.1029 27 6 2.4422 -3.4188 7.4354 28 6 1.9026 -2.6582 6.4122 29 9 0.7953 -3.0836 5.7656 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3634 0.5308 0.8799 32 1 -0.3634 0.4967 -0.8997 33 1 0.0933 -0.7019 -2.0538 34 1 -1.5287 -0.9436 -4.9587 35 1 1.4501 -2.7766 -0.6649 36 1 3.1311 -2.6595 -1.2844 37 1 2.7137 -2.7126 1.3878 38 1 3.9113 -1.5668 0.7109 39 1 2.0056 -2.2473 3.4989 40 1 3.4459 -1.2016 3.5198 41 1 2.2706 0.3887 5.0153 42 1 0.8300 -0.6566 4.9949 43 1 4.0954 -0.0926 6.4309 44 1 5.0502 -1.4383 8.2572 45 1 1.9785 -4.3527 7.7169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987292441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:30 Heat of formation + Delta-G solvation = -105.004741 kcal Electronic energy + Delta-G solvation = -28674.837491 eV Core-core repulsion = 24327.712754 eV Total energy + Delta-G solvation = -4347.124737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.03904 -49.99867 -41.30752 -40.00159 -38.88752 -35.91131 -34.99268 -33.43870 -32.11094 -31.83750 -31.05483 -29.86909 -26.77654 -26.10665 -25.06990 -24.18653 -23.66882 -22.36874 -20.88826 -19.85298 -19.44380 -19.20164 -18.27639 -18.20046 -17.12585 -17.04432 -16.84166 -16.56626 -16.48395 -16.32845 -16.28188 -15.73188 -15.56100 -15.37771 -14.88339 -14.70069 -14.60590 -14.25804 -13.87282 -13.75557 -13.62129 -13.37804 -13.20613 -12.99415 -12.94137 -12.88392 -12.67223 -12.62221 -12.49056 -12.37347 -12.07082 -12.00430 -11.95010 -11.59878 -11.51586 -10.92790 -10.78735 -10.06448 -9.63566 -9.61124 -9.00844 -7.93587 -5.22585 -0.09037 0.01957 1.49532 1.49941 1.59873 1.66606 1.96955 2.36973 2.58060 2.86848 3.33144 3.40115 3.45669 3.60332 3.71411 3.80211 3.88966 3.92525 3.96570 4.09863 4.17283 4.21789 4.28860 4.38787 4.42253 4.57018 4.59671 4.66983 4.70698 4.82859 4.84815 4.88574 4.93118 4.95647 5.06877 5.08380 5.15739 5.21431 5.27366 5.31455 5.35069 5.51683 5.56012 5.77395 6.28239 6.62521 7.19271 7.35289 8.09494 8.32473 9.30326 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027231 B = 0.002005 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.984816 B =13964.444919 C =14138.319355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 H 0.066 0.934 4 C 0.164 3.836 5 H 0.069 0.931 6 N -0.734 5.734 7 C -0.235 4.235 8 H 0.083 0.917 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.297 1.297 14 H -0.298 1.298 15 C -0.147 4.147 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.522 3.478 19 O -0.583 6.583 20 C -0.120 4.120 21 C -0.059 4.059 22 C -0.125 4.125 23 C -0.049 4.049 24 C -0.151 4.151 25 C 0.113 3.887 26 F -0.139 7.139 27 C -0.195 4.195 28 C 0.114 3.886 29 F -0.141 7.141 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.380 0.620 34 H 0.250 0.750 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.173 0.827 44 H 0.168 0.832 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.343 -3.882 26.238 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.084 0.916 4 C 0.054 3.946 5 H 0.087 0.913 6 N -0.376 5.376 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.224 1.224 14 H -0.225 1.225 15 C -0.187 4.187 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.313 3.687 19 O -0.464 6.464 20 C -0.160 4.160 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.067 4.067 24 C -0.170 4.170 25 C 0.094 3.906 26 F -0.118 7.118 27 C -0.215 4.215 28 C 0.095 3.905 29 F -0.119 7.119 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.216 0.784 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.190 0.810 44 H 0.185 0.815 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.054 -3.434 26.302 30.018 hybrid contribution -1.127 -0.447 -1.180 1.692 sum 12.927 -3.880 25.122 28.518 Atomic orbital electron populations 1.21813 0.96057 1.01151 1.01189 1.21623 0.94064 0.95774 0.85594 0.91578 1.21412 0.92046 0.94306 0.86812 0.91283 1.42880 1.05408 1.86498 1.02808 1.19703 0.93061 1.39335 0.84605 0.89943 1.25575 0.95370 1.03953 1.02168 1.69834 1.00093 1.59251 1.33093 0.85071 0.77996 0.76404 0.80260 1.18573 1.22408 1.22550 1.23363 1.01313 0.98591 0.95466 1.22522 0.95333 0.88639 0.95161 1.48772 1.50354 1.30828 1.04544 1.20960 0.80115 0.84859 0.82810 1.90670 1.40613 1.31329 1.83757 1.21636 1.03949 0.99700 0.90707 1.20186 1.00693 0.99131 0.89693 1.20039 0.97959 0.94565 1.00012 1.21148 0.92668 1.00248 0.92630 1.21521 1.02613 0.93272 0.99591 1.17496 0.93737 0.91531 0.87876 1.91523 1.85701 1.76414 1.58123 1.21128 0.98522 1.03254 0.98549 1.17388 0.85159 0.94353 0.93600 1.91519 1.50502 1.89763 1.80155 0.93654 0.92517 0.92627 0.78449 0.94162 0.92891 0.89329 0.88446 0.88439 0.88199 0.85549 0.88754 0.91842 0.80984 0.81466 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 7.94 71.98 0.57 -5.06 16 2 C 0.13 4.65 3.50 45.29 0.16 4.81 16 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.06 3.46 46.18 0.16 6.22 16 5 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 6 N -0.73 -35.60 4.98 -317.33 -1.58 -37.18 16 7 C -0.24 -12.51 9.97 84.03 0.84 -11.67 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 11 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 14 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 15 C -0.15 -4.37 6.77 31.98 0.22 -4.15 16 16 C 0.11 2.24 6.69 86.85 0.58 2.82 16 17 N -0.61 -16.91 3.09 -787.33 -2.43 -19.34 16 18 C 0.52 14.16 7.63 87.66 0.67 14.83 16 19 O -0.58 -20.45 14.89 -3.02 -0.05 -20.50 16 20 C -0.12 -2.07 4.69 29.85 0.14 -1.93 16 21 C -0.06 -1.02 4.36 29.85 0.13 -0.88 16 22 C -0.12 -1.74 5.14 -19.81 -0.10 -1.84 16 23 C -0.05 -0.44 9.66 22.26 0.22 -0.22 16 24 C -0.15 -1.36 10.02 22.32 0.22 -1.13 16 25 C 0.11 1.48 7.30 22.37 0.16 1.64 16 26 F -0.14 -2.07 17.27 44.97 0.78 -1.29 16 27 C -0.19 -2.82 10.01 22.36 0.22 -2.60 16 28 C 0.11 1.90 7.24 22.37 0.16 2.06 16 29 F -0.14 -2.91 16.66 44.97 0.75 -2.16 16 30 H 0.04 1.82 8.06 -2.39 -0.02 1.80 16 31 H 0.06 2.22 6.77 -2.39 -0.02 2.21 16 32 H 0.05 2.42 6.71 -2.38 -0.02 2.41 16 33 H 0.38 20.05 4.98 -92.71 -0.46 19.59 16 34 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.10 1.58 7.48 -2.39 -0.02 1.57 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.64 7.85 -2.39 -0.02 1.62 16 40 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.09 1.51 7.96 -2.39 -0.02 1.49 16 42 H 0.06 1.40 7.89 -2.38 -0.02 1.38 16 43 H 0.17 0.62 8.04 -2.91 -0.02 0.59 16 44 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 45 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -70.10 377.52 5.15 -64.95 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.55 Total: 28.15 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.82 Total: -1.07 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -3.73 Total: -115.36 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 1.53 Total: -3.46 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.10 5.15 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987292441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.053 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds