Wall clock time and date at job start Tue Mar 31 2020 20:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99841 * 2 1 4 4 C 1.54316 * 109.88218 * 238.89993 * 2 1 3 5 5 H 1.09003 * 110.71931 * 144.41481 * 4 2 1 6 6 N 1.46499 * 110.72305 * 21.32185 * 4 2 1 7 7 C 1.36931 * 120.00133 * 154.99752 * 6 4 2 8 8 H 1.08003 * 119.99984 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99859 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00129 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99810 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47311 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46946 * 120.00639 * 11 9 7 14 14 H 1.48494 * 109.47386 * 240.00253 * 11 9 7 15 15 C 1.55158 * 102.94308 * 262.77763 * 4 2 1 16 16 C 1.55130 * 101.48764 * 324.33105 * 15 4 2 17 17 N 1.47024 * 109.87968 * 121.09039 * 2 1 3 18 18 C 1.34773 * 125.65132 * 300.44431 * 17 2 1 19 19 O 1.21280 * 119.99987 * 359.97438 * 18 17 2 20 20 C 1.50702 * 119.99963 * 180.02562 * 18 17 2 21 21 C 1.52998 * 109.47045 * 180.02562 * 20 18 17 22 22 C 1.50702 * 109.47420 * 179.97438 * 21 20 18 23 23 C 1.38202 * 120.00170 * 99.99032 * 22 21 20 24 24 C 1.38431 * 119.99836 * 179.74650 * 23 22 21 25 25 F 1.35099 * 120.00014 * 180.25508 * 24 23 22 26 26 C 1.38474 * 119.99936 * 0.23812 * 24 23 22 27 27 C 1.38157 * 119.99923 * 0.02562 * 26 24 23 28 28 C 1.38428 * 119.99477 * 280.24747 * 22 21 20 29 29 F 1.35099 * 120.00267 * 359.97438 * 28 22 21 30 30 H 1.09000 * 109.47142 * 300.36173 * 1 2 3 31 31 H 1.08999 * 109.46616 * 60.35919 * 1 2 3 32 32 H 1.08992 * 109.47265 * 180.36268 * 1 2 3 33 33 H 0.96997 * 119.99267 * 334.99498 * 6 4 2 34 34 H 0.97004 * 120.00146 * 179.97438 * 10 9 7 35 35 H 1.08995 * 111.00784 * 82.57425 * 15 4 2 36 36 H 1.09005 * 111.00227 * 206.39183 * 15 4 2 37 37 H 1.08997 * 110.50043 * 278.45752 * 16 15 4 38 38 H 1.08998 * 110.34555 * 156.05539 * 16 15 4 39 39 H 1.08992 * 109.47689 * 59.99421 * 20 18 17 40 40 H 1.09000 * 109.46675 * 299.99245 * 20 18 17 41 41 H 1.08998 * 109.47868 * 59.99034 * 21 20 18 42 42 H 1.09004 * 109.47114 * 299.99325 * 21 20 18 43 43 H 1.08002 * 120.00402 * 0.03206 * 23 22 21 44 44 H 1.08005 * 119.99911 * 180.02562 * 26 24 23 45 45 H 1.08001 * 120.00138 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9657 -0.2833 -1.6181 6 7 1.0308 -0.7990 -2.2891 7 6 1.3985 -0.9347 -3.6011 8 1 2.4436 -1.0049 -3.8644 9 6 0.4282 -0.9821 -4.5925 10 7 -0.8454 -0.8960 -4.2716 11 14 0.9299 -1.1665 -6.3824 12 1 2.4101 -1.2407 -6.4765 13 1 0.3361 -2.4095 -6.9374 14 1 0.4423 0.0033 -7.1563 15 6 2.3518 -2.1695 -0.6922 16 6 2.8613 -1.8466 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.7752 -0.3844 2.4658 19 8 1.0791 0.5762 2.7180 20 6 2.3564 -1.2087 3.5855 21 6 1.9166 -0.6251 4.9297 22 6 2.4972 -1.4497 6.0496 23 6 3.6272 -1.0134 6.7149 24 6 4.1574 -1.7684 7.7470 25 9 5.2590 -1.3393 8.4009 26 6 3.5584 -2.9631 8.1095 27 6 2.4319 -3.4018 7.4407 28 6 1.9016 -2.6468 6.4081 29 9 0.7997 -3.0756 5.7546 30 1 -0.3633 0.5194 0.8867 31 1 -0.3632 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0065 33 1 0.0922 -0.7356 -2.0524 34 1 -1.5235 -0.9288 -4.9645 35 1 1.4452 -2.7737 -0.6602 36 1 3.1266 -2.6622 -1.2798 37 1 3.9123 -1.5589 0.7117 38 1 2.7177 -2.7048 1.3935 39 1 3.4443 -1.1937 3.5210 40 1 2.0016 -2.2359 3.5024 41 1 0.8286 -0.6404 4.9941 42 1 2.2710 0.4023 5.0132 43 1 4.0939 -0.0812 6.4328 44 1 3.9718 -3.5519 8.9151 45 1 1.9650 -4.3339 7.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987576921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:45 Heat of formation + Delta-G solvation = -105.416939 kcal Electronic energy + Delta-G solvation = -28724.546163 eV Core-core repulsion = 24377.403551 eV Total energy + Delta-G solvation = -4347.142612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.94468 -49.92482 -41.33720 -39.99958 -38.90456 -35.92358 -35.16578 -33.46868 -32.12617 -31.58076 -30.92103 -30.03117 -26.77427 -26.33738 -25.14562 -23.99878 -23.67367 -22.39520 -20.92025 -19.86556 -19.45791 -18.67615 -18.36896 -18.24836 -17.80065 -17.11234 -16.94345 -16.54640 -16.52491 -16.31090 -15.89681 -15.60453 -15.35830 -15.22571 -14.84829 -14.71691 -14.38412 -14.23434 -13.86543 -13.76626 -13.67738 -13.58618 -13.32327 -13.21409 -13.00614 -12.90441 -12.85832 -12.63789 -12.52083 -12.13952 -12.02714 -12.00659 -11.93540 -11.60680 -11.52238 -10.93304 -10.81707 -10.11977 -9.64882 -9.54071 -9.01383 -7.93839 -5.22875 -0.09367 0.02460 1.49367 1.49921 1.59786 1.64151 1.95660 2.35461 2.57820 3.11337 3.19319 3.34246 3.41568 3.62063 3.69111 3.78817 3.88718 3.94249 3.99586 4.07679 4.16579 4.20556 4.21732 4.38257 4.41596 4.54430 4.57202 4.67098 4.71021 4.76248 4.81763 4.88026 4.97057 5.01153 5.03088 5.06112 5.12025 5.20980 5.22011 5.27062 5.34303 5.51081 5.55358 5.78274 6.27841 6.60626 7.17031 7.34972 8.08853 8.32150 9.30024 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.002038 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.284413 B =13736.293256 C =13825.035866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.063 0.937 4 C 0.165 3.835 5 H 0.070 0.930 6 N -0.732 5.732 7 C -0.236 4.236 8 H 0.082 0.918 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.146 4.146 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.522 3.478 19 O -0.583 6.583 20 C -0.120 4.120 21 C -0.061 4.061 22 C -0.089 4.089 23 C -0.121 4.121 24 C 0.081 3.919 25 F -0.142 7.142 26 C -0.121 4.121 27 C -0.117 4.117 28 C 0.076 3.924 29 F -0.143 7.143 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.380 0.620 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.169 0.831 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.052 -6.358 26.858 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.081 0.919 4 C 0.055 3.945 5 H 0.088 0.912 6 N -0.374 5.374 7 C -0.368 4.368 8 H 0.100 0.900 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.223 1.223 14 H -0.226 1.226 15 C -0.187 4.187 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.464 6.464 20 C -0.159 4.159 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.140 4.140 24 C 0.062 3.938 25 F -0.120 7.120 26 C -0.140 4.140 27 C -0.136 4.136 28 C 0.057 3.943 29 F -0.122 7.122 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.215 0.785 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.175 0.825 44 H 0.187 0.813 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.791 -5.844 26.900 30.354 hybrid contribution -0.814 0.156 -1.312 1.552 sum 11.977 -5.688 25.588 28.819 Atomic orbital electron populations 1.21802 0.95986 1.01184 1.01163 1.21594 0.94144 0.95775 0.85680 0.91864 1.21403 0.92066 0.94322 0.86744 0.91206 1.42844 1.05106 1.87269 1.02214 1.19705 0.92901 1.39967 0.84230 0.89971 1.25571 0.95339 1.03930 1.02148 1.69832 0.99953 1.59467 1.32967 0.85073 0.77988 0.76390 0.80287 1.18616 1.22341 1.22556 1.23403 1.01356 0.98564 0.95382 1.22580 0.95225 0.88632 0.95296 1.48687 1.50234 1.30980 1.04507 1.20923 0.80100 0.84859 0.82852 1.90671 1.40778 1.31108 1.83833 1.21610 1.03792 0.99948 0.90547 1.20206 1.00954 0.98944 0.89812 1.19671 0.96097 0.94489 0.98728 1.21070 0.95851 1.01661 0.95428 1.17837 0.86081 0.95497 0.94423 1.91517 1.50853 1.89803 1.79854 1.21274 0.95813 0.95190 1.01715 1.21248 0.96532 1.01391 0.94414 1.17857 0.86234 0.94965 0.95266 1.91513 1.50979 1.89530 1.80133 0.92598 0.92665 0.93537 0.78469 0.94141 0.92704 0.89305 0.88561 0.88299 0.85877 0.87735 0.91249 0.89309 0.82495 0.81305 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 7.93 71.98 0.57 -5.07 16 2 C 0.13 4.67 3.48 45.34 0.16 4.83 16 3 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.16 6.12 3.47 46.18 0.16 6.28 16 5 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 6 N -0.73 -35.62 4.95 -317.34 -1.57 -37.19 16 7 C -0.24 -12.59 9.96 84.03 0.84 -11.75 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 10 N -0.97 -59.08 13.06 21.65 0.28 -58.79 16 11 Si 0.97 45.31 29.55 68.60 2.03 47.33 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 13 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 15 C -0.15 -4.36 6.79 32.06 0.22 -4.14 16 16 C 0.10 2.25 6.70 86.93 0.58 2.83 16 17 N -0.61 -17.19 3.08 -787.61 -2.42 -19.62 16 18 C 0.52 14.54 7.63 87.66 0.67 15.21 16 19 O -0.58 -20.93 14.88 -3.03 -0.05 -20.98 16 20 C -0.12 -2.16 4.68 29.85 0.14 -2.02 16 21 C -0.06 -1.13 4.35 29.85 0.13 -1.00 16 22 C -0.09 -1.35 5.14 -19.83 -0.10 -1.45 16 23 C -0.12 -1.58 9.65 22.31 0.22 -1.36 16 24 C 0.08 1.03 7.30 22.37 0.16 1.19 16 25 F -0.14 -2.08 17.27 44.97 0.78 -1.31 16 26 C -0.12 -1.15 10.02 22.31 0.22 -0.92 16 27 C -0.12 -1.23 10.02 22.31 0.22 -1.00 16 28 C 0.08 1.17 7.24 22.37 0.16 1.33 16 29 F -0.14 -2.76 16.66 44.97 0.75 -2.01 16 30 H 0.06 2.21 6.75 -2.39 -0.02 2.19 16 31 H 0.05 2.42 6.81 -2.39 -0.02 2.40 16 32 H 0.05 1.87 8.02 -2.39 -0.02 1.85 16 33 H 0.38 20.08 5.06 -92.71 -0.47 19.61 16 34 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.61 7.48 -2.39 -0.02 1.59 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.72 7.85 -2.39 -0.02 1.70 16 41 H 0.07 1.56 7.91 -2.39 -0.02 1.54 16 42 H 0.09 1.63 7.96 -2.39 -0.02 1.61 16 43 H 0.16 1.62 8.04 -2.91 -0.02 1.59 16 44 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 45 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -69.72 377.56 5.16 -64.57 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.55 Total: 28.95 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.82 Total: -0.95 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -3.71 Total: -115.60 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 1.53 Total: -3.32 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -69.72 5.16 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987576921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.852 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds