Wall clock time and date at job start Tue Mar 31 2020 20:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.87311 * 2 1 4 4 C 1.54324 * 109.88442 * 121.01742 * 2 1 3 5 5 H 1.08997 * 110.72177 * 23.07419 * 4 2 1 6 6 N 1.46499 * 110.71864 * 259.97094 * 4 2 1 7 7 C 1.36932 * 119.99549 * 157.44267 * 6 4 2 8 8 H 1.08003 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.38817 * 120.00011 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55165 * 103.09970 * 141.52116 * 4 2 1 16 16 C 1.55123 * 101.48436 * 324.71710 * 15 4 2 17 17 N 1.47022 * 109.88070 * 238.82909 * 2 1 3 18 18 C 1.34776 * 125.64966 * 61.60032 * 17 2 1 19 19 O 1.21273 * 120.00225 * 0.02562 * 18 17 2 20 20 C 1.50702 * 119.99720 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.46890 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47346 * 180.02562 * 21 20 18 23 23 C 1.38213 * 119.99838 * 99.99707 * 22 21 20 24 24 C 1.38431 * 119.99717 * 179.97438 * 23 22 21 25 25 F 1.35102 * 119.99945 * 180.02562 * 24 23 22 26 26 C 1.38472 * 119.99985 * 359.97438 * 24 23 22 27 27 C 1.38164 * 120.00308 * 0.03910 * 26 24 23 28 28 C 1.38427 * 120.00390 * 279.73035 * 22 21 20 29 29 F 1.35102 * 119.99508 * 0.02562 * 28 22 21 30 30 H 1.08999 * 109.46874 * 298.98181 * 1 2 3 31 31 H 1.08994 * 109.47492 * 58.97980 * 1 2 3 32 32 H 1.09004 * 109.47106 * 178.98678 * 1 2 3 33 33 H 0.96993 * 120.00302 * 337.44232 * 6 4 2 34 34 H 0.96998 * 119.99442 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00134 * 82.66356 * 15 4 2 36 36 H 1.08998 * 111.00005 * 206.51542 * 15 4 2 37 37 H 1.08997 * 110.20567 * 277.95760 * 16 15 4 38 38 H 1.09002 * 110.50846 * 155.75540 * 16 15 4 39 39 H 1.08995 * 109.47874 * 300.00467 * 20 18 17 40 40 H 1.09000 * 109.46956 * 60.00864 * 20 18 17 41 41 H 1.09006 * 109.47196 * 300.00316 * 21 20 18 42 42 H 1.09002 * 109.47208 * 60.00014 * 21 20 18 43 43 H 1.07992 * 120.00017 * 359.95957 * 23 22 21 44 44 H 1.07999 * 119.99591 * 180.02562 * 26 24 23 45 45 H 1.07998 * 119.99909 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3041 -1.4415 1.6220 6 7 2.4556 0.1992 2.2872 7 6 2.5065 -0.2040 3.5948 8 1 2.2517 -1.2203 3.8568 9 6 2.8867 0.6931 4.5835 10 7 2.9361 0.3054 5.8403 11 14 3.3281 2.4507 4.1302 12 1 4.7820 2.5370 3.8404 13 1 2.9946 3.3525 5.2619 14 1 2.5586 2.8600 2.9278 15 6 3.2871 -1.5168 0.6977 16 6 2.8145 -1.8804 -0.7343 17 7 2.0300 -0.7156 -1.1830 18 6 1.8073 -0.3654 -2.4652 19 8 1.1434 0.6174 -2.7189 20 6 2.3841 -1.1943 -3.5838 21 6 1.9858 -0.5835 -4.9289 22 6 2.5621 -1.4127 -6.0475 23 6 1.7656 -2.3264 -6.7115 24 6 2.2948 -3.0877 -7.7394 25 9 1.5161 -3.9806 -8.3888 26 6 3.6221 -2.9334 -8.1027 27 6 4.4184 -2.0202 -7.4388 28 6 3.8877 -1.2553 -6.4138 29 9 4.6650 -0.3586 -5.7680 30 1 -0.3633 0.4979 0.8990 31 1 -0.3634 0.5296 -0.8806 32 1 -0.3633 -1.0275 -0.0182 33 1 2.6848 1.1118 2.0518 34 1 3.2021 0.9323 6.5311 35 1 4.1664 -0.8735 0.6662 36 1 3.4812 -2.4127 1.2874 37 1 2.1886 -2.7724 -0.7091 38 1 3.6705 -2.0369 -1.3907 39 1 3.4707 -1.2114 -3.5005 40 1 1.9987 -2.2117 -3.5181 41 1 0.8991 -0.5661 -5.0126 42 1 2.3715 0.4339 -4.9944 43 1 0.7304 -2.4466 -6.4282 44 1 4.0348 -3.5271 -8.9050 45 1 5.4537 -1.9002 -7.7220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987576925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:53 Heat of formation + Delta-G solvation = -91.074566 kcal Electronic energy + Delta-G solvation = -28695.467378 eV Core-core repulsion = 24348.946698 eV Total energy + Delta-G solvation = -4346.520680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.36613 -49.30731 -40.21495 -39.38915 -37.65511 -34.46440 -34.29097 -31.88758 -31.15159 -30.83354 -30.11547 -29.25444 -25.44800 -25.38701 -23.46703 -22.75501 -22.60958 -21.57203 -20.24636 -18.87406 -18.09571 -17.71758 -17.66340 -17.60729 -16.83239 -16.37918 -16.18643 -15.75650 -15.37077 -14.89659 -14.84472 -14.68814 -14.27124 -14.15732 -13.77165 -13.55531 -13.46024 -13.20016 -13.08616 -12.89183 -12.70090 -12.56176 -12.31886 -12.05067 -12.00404 -11.85828 -11.45806 -11.35604 -11.31518 -11.20824 -10.92096 -10.67217 -10.38705 -10.09261 -9.80278 -9.66272 -9.53927 -8.99836 -8.97901 -8.51935 -7.37104 -5.84432 -3.21750 0.44860 0.51283 2.68099 2.81140 3.05922 3.34279 3.38081 3.42724 3.66216 3.72195 4.01652 4.16915 4.42741 4.53142 4.59517 4.62405 4.77624 4.79770 4.89847 5.06119 5.15252 5.22748 5.29336 5.35109 5.38844 5.45323 5.48902 5.50216 5.55868 5.56600 5.64717 5.77930 5.80320 5.83032 5.86855 5.97529 6.17307 6.29738 6.31688 6.48593 6.49529 6.58295 6.77220 7.64900 7.89492 8.22873 8.34027 9.10675 9.83345 10.01606 11.33229 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.002179 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.371848 B =12847.723519 C =13085.054318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 H 0.073 0.927 4 C 0.181 3.819 5 H 0.075 0.925 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.066 4.066 22 C -0.084 4.084 23 C -0.122 4.122 24 C 0.091 3.909 25 F -0.135 7.135 26 C -0.130 4.130 27 C -0.122 4.122 28 C 0.093 3.907 29 F -0.130 7.130 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -8.327 -28.919 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.091 0.909 4 C 0.070 3.930 5 H 0.092 0.908 6 N -0.381 5.381 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.422 6.422 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.141 4.141 24 C 0.072 3.928 25 F -0.114 7.114 26 C -0.149 4.149 27 C -0.141 4.141 28 C 0.073 3.927 29 F -0.108 7.108 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.531 -7.891 -28.864 29.928 hybrid contribution 0.539 1.132 -0.183 1.267 sum 1.070 -6.760 -29.047 29.843 Atomic orbital electron populations 1.22050 0.94655 1.01854 1.02736 1.21928 0.94697 0.96668 0.84725 0.90851 1.21223 0.93911 0.91311 0.86584 0.90759 1.42705 1.81886 1.09585 1.03904 1.19019 1.39398 0.98120 0.81215 0.88998 1.24666 1.01282 0.97708 0.95115 1.69695 1.53781 1.34958 0.99255 0.86589 0.78514 0.86201 0.77468 1.21006 1.21612 1.20216 1.23563 1.00956 1.02018 0.93036 1.22446 0.94704 0.88327 0.97141 1.48584 1.52104 1.28659 1.04990 1.20133 0.80555 0.85323 0.82377 1.90686 1.40418 1.27848 1.83253 1.21605 1.02783 1.00298 0.92442 1.20327 1.02210 0.98529 0.89303 1.19839 0.92071 0.98017 0.98583 1.20988 1.01466 0.95993 0.95618 1.17668 0.89357 0.91427 0.94363 1.91531 1.74344 1.65572 1.79936 1.20998 0.92111 1.00104 1.01696 1.21015 1.01388 0.96143 0.95576 1.17584 0.88914 0.91604 0.94589 1.91543 1.74037 1.65153 1.80076 0.91162 0.91922 0.92846 0.80371 0.92930 0.90729 0.90004 0.91459 0.91171 0.88766 0.88674 0.89169 0.89195 0.83521 0.83729 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.09 37.16 0.34 -2.09 16 2 C 0.12 2.04 3.21 -66.95 -0.22 1.82 16 3 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 4 C 0.18 3.25 3.12 -66.09 -0.21 3.04 16 5 H 0.07 1.36 7.81 -51.93 -0.41 0.95 16 6 N -0.74 -16.67 5.04 -51.65 -0.26 -16.93 16 7 C -0.25 -6.67 10.45 -15.06 -0.16 -6.83 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 11 Si 0.88 21.74 27.73 -169.99 -4.71 17.02 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 15 C -0.15 -2.34 6.79 -24.46 -0.17 -2.50 16 16 C 0.10 1.14 6.70 -2.41 -0.02 1.13 16 17 N -0.61 -8.57 3.07 -162.88 -0.50 -9.07 16 18 C 0.53 7.28 7.64 -10.98 -0.08 7.19 16 19 O -0.54 -9.28 15.03 5.56 0.08 -9.19 16 20 C -0.13 -1.26 4.68 -27.88 -0.13 -1.39 16 21 C -0.07 -0.61 4.36 -27.88 -0.12 -0.73 16 22 C -0.08 -0.68 5.14 -104.56 -0.54 -1.21 16 23 C -0.12 -0.88 9.65 -39.52 -0.38 -1.26 16 24 C 0.09 0.67 7.30 -39.42 -0.29 0.38 16 25 F -0.14 -1.11 17.27 2.25 0.04 -1.07 16 26 C -0.13 -0.78 10.02 -39.52 -0.40 -1.17 16 27 C -0.12 -0.77 10.02 -39.52 -0.40 -1.17 16 28 C 0.09 0.76 7.24 -39.43 -0.29 0.48 16 29 F -0.13 -1.27 16.66 2.25 0.04 -1.23 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.36 8.24 5.39 -40.82 -0.22 8.02 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 39 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.82 7.96 -51.93 -0.41 0.40 16 42 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 43 H 0.15 0.86 8.04 -52.49 -0.42 0.44 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -32.02 378.78 -8.37 -40.39 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.40 Total: 6.22 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.14 Total: -4.17 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.02 Total: -53.67 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.02 -8.37 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987576925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.688 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds