Wall clock time and date at job start Tue Mar 31 2020 20:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.87311 * 2 1 4 4 C 1.54324 * 109.88442 * 121.01742 * 2 1 3 5 5 H 1.08997 * 110.72177 * 23.07419 * 4 2 1 6 6 N 1.46499 * 110.71864 * 259.97094 * 4 2 1 7 7 C 1.36932 * 119.99549 * 157.44267 * 6 4 2 8 8 H 1.08003 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.38817 * 120.00011 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55165 * 103.09970 * 141.52116 * 4 2 1 16 16 C 1.55123 * 101.48436 * 324.71710 * 15 4 2 17 17 N 1.47022 * 109.88070 * 238.82909 * 2 1 3 18 18 C 1.34776 * 125.64966 * 61.60032 * 17 2 1 19 19 O 1.21273 * 120.00225 * 0.02562 * 18 17 2 20 20 C 1.50702 * 119.99720 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.46890 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47346 * 180.02562 * 21 20 18 23 23 C 1.38213 * 119.99838 * 99.99707 * 22 21 20 24 24 C 1.38431 * 119.99717 * 179.97438 * 23 22 21 25 25 F 1.35102 * 119.99945 * 180.02562 * 24 23 22 26 26 C 1.38472 * 119.99985 * 359.97438 * 24 23 22 27 27 C 1.38164 * 120.00308 * 0.03910 * 26 24 23 28 28 C 1.38427 * 120.00390 * 279.73035 * 22 21 20 29 29 F 1.35102 * 119.99508 * 0.02562 * 28 22 21 30 30 H 1.08999 * 109.46874 * 298.98181 * 1 2 3 31 31 H 1.08994 * 109.47492 * 58.97980 * 1 2 3 32 32 H 1.09004 * 109.47106 * 178.98678 * 1 2 3 33 33 H 0.96993 * 120.00302 * 337.44232 * 6 4 2 34 34 H 0.96998 * 119.99442 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00134 * 82.66356 * 15 4 2 36 36 H 1.08998 * 111.00005 * 206.51542 * 15 4 2 37 37 H 1.08997 * 110.20567 * 277.95760 * 16 15 4 38 38 H 1.09002 * 110.50846 * 155.75540 * 16 15 4 39 39 H 1.08995 * 109.47874 * 300.00467 * 20 18 17 40 40 H 1.09000 * 109.46956 * 60.00864 * 20 18 17 41 41 H 1.09006 * 109.47196 * 300.00316 * 21 20 18 42 42 H 1.09002 * 109.47208 * 60.00014 * 21 20 18 43 43 H 1.07992 * 120.00017 * 359.95957 * 23 22 21 44 44 H 1.07999 * 119.99591 * 180.02562 * 26 24 23 45 45 H 1.07998 * 119.99909 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3041 -1.4415 1.6220 6 7 2.4556 0.1992 2.2872 7 6 2.5065 -0.2040 3.5948 8 1 2.2517 -1.2203 3.8568 9 6 2.8867 0.6931 4.5835 10 7 2.9361 0.3054 5.8403 11 14 3.3281 2.4507 4.1302 12 1 4.7820 2.5370 3.8404 13 1 2.9946 3.3525 5.2619 14 1 2.5586 2.8600 2.9278 15 6 3.2871 -1.5168 0.6977 16 6 2.8145 -1.8804 -0.7343 17 7 2.0300 -0.7156 -1.1830 18 6 1.8073 -0.3654 -2.4652 19 8 1.1434 0.6174 -2.7189 20 6 2.3841 -1.1943 -3.5838 21 6 1.9858 -0.5835 -4.9289 22 6 2.5621 -1.4127 -6.0475 23 6 1.7656 -2.3264 -6.7115 24 6 2.2948 -3.0877 -7.7394 25 9 1.5161 -3.9806 -8.3888 26 6 3.6221 -2.9334 -8.1027 27 6 4.4184 -2.0202 -7.4388 28 6 3.8877 -1.2553 -6.4138 29 9 4.6650 -0.3586 -5.7680 30 1 -0.3633 0.4979 0.8990 31 1 -0.3634 0.5296 -0.8806 32 1 -0.3633 -1.0275 -0.0182 33 1 2.6848 1.1118 2.0518 34 1 3.2021 0.9323 6.5311 35 1 4.1664 -0.8735 0.6662 36 1 3.4812 -2.4127 1.2874 37 1 2.1886 -2.7724 -0.7091 38 1 3.6705 -2.0369 -1.3907 39 1 3.4707 -1.2114 -3.5005 40 1 1.9987 -2.2117 -3.5181 41 1 0.8991 -0.5661 -5.0126 42 1 2.3715 0.4339 -4.9944 43 1 0.7304 -2.4466 -6.4282 44 1 4.0348 -3.5271 -8.9050 45 1 5.4537 -1.9002 -7.7220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987576925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:52 Heat of formation + Delta-G solvation = -109.166102 kcal Electronic energy + Delta-G solvation = -28696.251885 eV Core-core repulsion = 24348.946698 eV Total energy + Delta-G solvation = -4347.305188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.95026 -49.92944 -41.33260 -39.99943 -38.89767 -36.02823 -35.17857 -33.60253 -32.40958 -31.66191 -31.16941 -30.22361 -26.91033 -26.23743 -24.47238 -24.00685 -23.61557 -22.35114 -21.68000 -20.12245 -19.44720 -18.67379 -18.38588 -18.24610 -17.83600 -17.43719 -16.89011 -16.55431 -16.41711 -16.24284 -15.93316 -15.56470 -15.37402 -15.14795 -14.79229 -14.70543 -14.50530 -14.28833 -14.24178 -13.78505 -13.71370 -13.55113 -13.48160 -13.38075 -13.25698 -13.02043 -12.70570 -12.58326 -12.52977 -12.26023 -12.09720 -12.01012 -11.94105 -11.82581 -11.55300 -10.99869 -10.84277 -10.12603 -9.67904 -9.54679 -9.33223 -8.03157 -5.36987 -0.09907 0.01858 1.37910 1.38430 1.45538 1.62229 1.91574 2.34784 2.46560 3.10677 3.18519 3.26381 3.36451 3.52519 3.59646 3.65765 3.79582 3.92448 3.99375 4.06607 4.12784 4.16487 4.19979 4.33947 4.36810 4.45967 4.54540 4.66182 4.70099 4.75630 4.77231 4.90910 4.96569 5.00254 5.01985 5.02784 5.11317 5.20396 5.22475 5.22858 5.32814 5.42568 5.76593 5.77703 6.20580 6.56944 7.04556 7.14532 7.80048 7.97601 9.17664 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.002179 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.371848 B =12847.723519 C =13085.054318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.129 3.871 3 H 0.051 0.949 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.745 5.745 7 C -0.223 4.223 8 H 0.067 0.933 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.297 1.297 14 H -0.259 1.259 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.582 6.582 20 C -0.120 4.120 21 C -0.061 4.061 22 C -0.089 4.089 23 C -0.122 4.122 24 C 0.081 3.919 25 F -0.142 7.142 26 C -0.122 4.122 27 C -0.118 4.118 28 C 0.077 3.923 29 F -0.143 7.143 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.363 0.637 34 H 0.257 0.743 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.157 0.843 44 H 0.169 0.831 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -9.577 -31.915 33.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.024 3.976 3 H 0.069 0.931 4 C 0.063 3.937 5 H 0.089 0.911 6 N -0.387 5.387 7 C -0.354 4.354 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.206 1.206 13 H -0.224 1.224 14 H -0.184 1.184 15 C -0.190 4.190 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.463 6.463 20 C -0.160 4.160 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.140 4.140 24 C 0.061 3.939 25 F -0.121 7.121 26 C -0.140 4.140 27 C -0.136 4.136 28 C 0.057 3.943 29 F -0.121 7.121 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.196 0.804 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.175 0.825 44 H 0.186 0.814 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.273 -9.178 -31.933 33.250 hybrid contribution 0.268 1.423 0.659 1.591 sum 1.541 -7.755 -31.274 32.258 Atomic orbital electron populations 1.21957 0.94173 1.02516 1.01804 1.21634 0.95006 0.95592 0.85322 0.93091 1.21424 0.95317 0.90862 0.86100 0.91086 1.42714 1.82235 1.10457 1.03340 1.18986 1.36644 0.96791 0.83010 0.91510 1.25381 1.02710 1.01876 0.95081 1.69853 1.56357 1.36312 1.00432 0.85549 0.78447 0.81238 0.77357 1.20551 1.22366 1.18433 1.23404 0.98857 1.01385 0.95346 1.22564 0.95978 0.88011 0.95147 1.48646 1.52251 1.29042 1.04498 1.20895 0.79807 0.85092 0.82765 1.90673 1.42171 1.29661 1.83748 1.21615 1.03168 1.00646 0.90548 1.20208 1.02097 0.97793 0.89803 1.19672 0.92204 0.98419 0.98684 1.21075 1.01908 0.95602 0.95442 1.17847 0.89924 0.91537 0.94568 1.91518 1.74634 1.65828 1.80077 1.21275 0.91445 0.99627 1.01692 1.21248 1.02432 0.95326 0.94599 1.17842 0.89011 0.92017 0.95410 1.91512 1.74361 1.65765 1.80479 0.92280 0.92594 0.91368 0.80408 0.93365 0.91867 0.89573 0.88878 0.87983 0.87608 0.85947 0.89322 0.91157 0.82501 0.81366 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.09 71.98 0.65 -3.84 16 2 C 0.13 4.15 3.21 45.34 0.15 4.29 16 3 H 0.05 1.87 7.70 -2.38 -0.02 1.85 16 4 C 0.17 6.03 3.12 46.18 0.14 6.18 16 5 H 0.07 2.55 7.81 -2.39 -0.02 2.53 16 6 N -0.75 -33.44 5.04 -317.32 -1.60 -35.04 16 7 C -0.22 -12.17 10.45 84.04 0.88 -11.29 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 10 N -0.98 -61.49 13.97 21.65 0.30 -61.19 16 11 Si 0.95 45.45 27.73 68.60 1.90 47.36 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 14 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 15 C -0.15 -4.22 6.79 32.06 0.22 -4.00 16 16 C 0.10 2.10 6.70 86.93 0.58 2.68 16 17 N -0.61 -15.83 3.07 -787.62 -2.42 -18.25 16 18 C 0.52 13.47 7.64 87.66 0.67 14.14 16 19 O -0.58 -19.53 15.03 -3.01 -0.05 -19.57 16 20 C -0.12 -1.98 4.68 29.85 0.14 -1.84 16 21 C -0.06 -1.04 4.36 29.85 0.13 -0.91 16 22 C -0.09 -1.26 5.14 -19.83 -0.10 -1.36 16 23 C -0.12 -1.49 9.65 22.31 0.22 -1.27 16 24 C 0.08 0.98 7.30 22.37 0.16 1.14 16 25 F -0.14 -2.03 17.27 44.97 0.78 -1.25 16 26 C -0.12 -1.08 10.02 22.31 0.22 -0.86 16 27 C -0.12 -1.15 10.02 22.31 0.22 -0.92 16 28 C 0.08 1.10 7.24 22.37 0.16 1.26 16 29 F -0.14 -2.57 16.66 44.97 0.75 -1.82 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.79 6.90 -2.39 -0.02 1.78 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.36 16.26 5.39 -92.71 -0.50 15.76 16 34 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.48 7.47 -2.39 -0.02 1.46 16 39 H 0.11 1.56 7.85 -2.39 -0.02 1.54 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.51 7.96 -2.38 -0.02 1.49 16 42 H 0.07 1.47 7.90 -2.39 -0.02 1.45 16 43 H 0.16 1.50 8.04 -2.91 -0.02 1.48 16 44 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 45 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -71.19 378.78 5.04 -66.15 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.45 Total: 23.14 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.91 Total: 0.48 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -3.71 Total: -114.48 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 1.53 Total: -3.08 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.36 kcal Total: -71.19 5.04 -66.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987576925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.018 kcal (2) G-P(sol) polarization free energy of solvation -71.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds