Wall clock time and date at job start Tue Mar 31 2020 20:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.99561 * 2 1 4 4 C 1.54321 * 109.87797 * 238.90494 * 2 1 3 5 5 H 1.09007 * 110.71556 * 144.23723 * 4 2 1 6 6 N 1.46496 * 110.72698 * 21.13870 * 4 2 1 7 7 C 1.36934 * 120.00548 * 157.43715 * 6 4 2 8 8 H 1.08004 * 119.99288 * 0.02562 * 7 6 4 9 9 C 1.38805 * 120.00389 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00257 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55154 * 103.10085 * 262.68518 * 4 2 1 16 16 C 1.54912 * 101.58394 * 324.59022 * 15 4 2 17 17 N 1.47321 * 109.84759 * 121.30191 * 2 1 3 18 18 C 1.34769 * 125.61417 * 300.41520 * 17 2 1 19 19 O 1.21286 * 120.00285 * 0.20157 * 18 17 2 20 20 C 1.50704 * 119.99940 * 180.20551 * 18 17 2 21 21 C 1.53002 * 109.47283 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47207 * 179.97438 * 21 20 18 23 23 C 1.38252 * 120.00101 * 264.72209 * 22 21 20 24 24 C 1.38217 * 120.07166 * 179.76847 * 23 22 21 25 25 C 1.38257 * 120.06749 * 0.50523 * 24 23 22 26 26 C 1.38374 * 120.00204 * 359.75529 * 25 24 23 27 27 F 1.35092 * 120.03585 * 180.02562 * 26 25 24 28 28 C 1.38373 * 119.99852 * 84.99952 * 22 21 20 29 29 F 1.35103 * 120.03324 * 359.95690 * 28 22 21 30 30 H 1.09002 * 109.47637 * 181.09459 * 1 2 3 31 31 H 1.09002 * 109.46951 * 301.09625 * 1 2 3 32 32 H 1.09000 * 109.47555 * 61.09504 * 1 2 3 33 33 H 0.96999 * 119.99694 * 337.44239 * 6 4 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00426 * 82.66650 * 15 4 2 36 36 H 1.09004 * 111.00826 * 206.47948 * 15 4 2 37 37 H 1.09004 * 110.36587 * 155.84869 * 16 15 4 38 38 H 1.09005 * 110.36502 * 278.16827 * 16 15 4 39 39 H 1.08998 * 109.46922 * 299.99703 * 20 18 17 40 40 H 1.08996 * 109.47230 * 60.00172 * 20 18 17 41 41 H 1.08995 * 109.46766 * 300.00243 * 21 20 18 42 42 H 1.09003 * 109.47126 * 60.00039 * 21 20 18 43 43 H 1.08003 * 119.96756 * 0.02754 * 23 22 21 44 44 H 1.07999 * 119.96727 * 180.28494 * 24 23 22 45 45 H 1.07999 * 120.00061 * 179.76521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7495 -1.2427 5 1 2.9639 -0.2812 -1.6201 6 7 1.0292 -0.8026 -2.2875 7 6 1.3923 -0.9889 -3.5946 8 1 2.4349 -1.0970 -3.8552 9 6 0.4207 -1.0387 -4.5846 10 7 0.7697 -1.2182 -5.8410 11 14 -1.3825 -0.8523 -4.1337 12 1 -1.9614 -2.1891 -3.8453 13 1 -1.5054 0.0103 -2.9312 14 1 -2.1142 -0.2300 -5.2663 15 6 2.3553 -2.1700 -0.6958 16 6 2.8597 -1.8526 0.7341 17 7 2.0302 -0.7199 1.1840 18 6 1.7749 -0.3940 2.4665 19 8 1.0759 0.5639 2.7212 20 6 2.3582 -1.2197 3.5842 21 6 1.9183 -0.6396 4.9300 22 6 2.5010 -1.4656 6.0476 23 6 1.7544 -2.4786 6.6203 24 6 2.2892 -3.2402 7.6422 25 6 3.5679 -2.9839 8.1010 26 6 4.3158 -1.9672 7.5336 27 9 5.5655 -1.7165 7.9810 28 6 3.7811 -1.2065 6.5046 29 9 4.5095 -0.2136 5.9487 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5308 0.8800 32 1 -0.3634 0.4967 -0.8996 33 1 0.0929 -0.7058 -2.0534 34 1 0.0906 -1.2534 -6.5327 35 1 1.4501 -2.7764 -0.6651 36 1 3.1311 -2.6594 -1.2847 37 1 2.7138 -2.7128 1.3875 38 1 3.9114 -1.5669 0.7106 39 1 2.0058 -2.2476 3.4986 40 1 3.4460 -1.2019 3.5196 41 1 2.2710 0.3882 5.0152 42 1 0.8303 -0.6570 4.9949 43 1 0.7538 -2.6778 6.2659 44 1 1.7062 -4.0341 8.0852 45 1 3.9833 -3.5772 8.9021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987620421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:56 Heat of formation + Delta-G solvation = -101.117456 kcal Electronic energy + Delta-G solvation = -28875.760332 eV Core-core repulsion = 24528.804160 eV Total energy + Delta-G solvation = -4346.956172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.50418 -49.59617 -41.37115 -40.06275 -38.97986 -36.03800 -35.10305 -33.66602 -32.18133 -31.50809 -31.26084 -30.27718 -26.93815 -26.31624 -24.84390 -23.79413 -23.74919 -22.48749 -20.96423 -20.04404 -19.81029 -18.92569 -18.31126 -18.26366 -17.65743 -17.36230 -17.20581 -16.65538 -16.46591 -16.01728 -15.96481 -15.76510 -15.60091 -15.42421 -14.94529 -14.73903 -14.51726 -14.18718 -14.05426 -13.78343 -13.69757 -13.48885 -13.38912 -13.11302 -13.05302 -12.90449 -12.81968 -12.72723 -12.58789 -12.25078 -12.11898 -12.04652 -11.91832 -11.72397 -11.55454 -10.98029 -10.82634 -9.87502 -9.73835 -9.68289 -9.32488 -8.02629 -5.36308 -0.05391 -0.01335 1.36606 1.38334 1.45352 1.63021 1.92124 2.41898 2.46810 2.79617 3.24732 3.29375 3.41686 3.55224 3.61150 3.76240 3.79753 3.89866 3.93186 4.11130 4.12655 4.20687 4.24443 4.33793 4.35300 4.48774 4.54639 4.59878 4.65715 4.80189 4.81127 4.83842 4.96136 5.01885 5.02890 5.10261 5.15024 5.23272 5.24266 5.29911 5.34869 5.46178 5.77468 5.79706 6.21223 6.57418 7.06226 7.15205 7.81590 8.00049 9.18410 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025839 B = 0.002165 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.392524 B =12932.366401 C =13154.076080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.131 3.869 3 H 0.064 0.936 4 C 0.167 3.833 5 H 0.065 0.935 6 N -0.746 5.746 7 C -0.226 4.226 8 H 0.064 0.936 9 C -0.060 4.060 10 N -0.980 5.980 11 Si 0.942 3.058 12 H -0.276 1.276 13 H -0.255 1.255 14 H -0.297 1.297 15 C -0.145 4.145 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.581 6.581 20 C -0.120 4.120 21 C -0.061 4.061 22 C -0.091 4.091 23 C -0.091 4.091 24 C -0.084 4.084 25 C -0.125 4.125 26 C 0.044 3.956 27 F -0.145 7.145 28 C 0.042 3.958 29 F -0.145 7.145 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.370 0.630 34 H 0.257 0.743 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.166 0.834 44 H 0.178 0.822 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -7.722 32.293 33.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.083 0.917 4 C 0.058 3.942 5 H 0.083 0.917 6 N -0.391 5.391 7 C -0.357 4.357 8 H 0.082 0.918 9 C -0.252 4.252 10 N -0.631 5.631 11 Si 0.769 3.231 12 H -0.202 1.202 13 H -0.180 1.180 14 H -0.224 1.224 15 C -0.185 4.185 16 C -0.018 4.018 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.462 6.462 20 C -0.160 4.160 21 C -0.099 4.099 22 C -0.092 4.092 23 C -0.108 4.108 24 C -0.102 4.102 25 C -0.143 4.143 26 C 0.024 3.976 27 F -0.124 7.124 28 C 0.022 3.978 29 F -0.124 7.124 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.206 0.794 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.184 0.816 44 H 0.195 0.805 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.518 -7.164 32.310 33.282 hybrid contribution -0.386 0.847 -0.765 1.205 sum 3.133 -6.317 31.545 32.324 Atomic orbital electron populations 1.21967 0.95475 1.02057 1.01782 1.21625 0.94627 0.95733 0.85359 0.91745 1.21354 0.91651 0.94795 0.86397 0.91721 1.42953 1.04933 1.88170 1.03039 1.19028 0.93751 1.39618 0.83321 0.91806 1.25396 1.01895 1.02831 0.95042 1.69862 1.33877 1.58901 1.00449 0.85628 0.81391 0.78447 0.77594 1.20218 1.17957 1.22374 1.23335 1.01910 0.98160 0.95144 1.22526 0.94983 0.88875 0.95388 1.48737 1.50364 1.30868 1.04492 1.20895 0.80074 0.84837 0.82724 1.90674 1.40769 1.31005 1.83716 1.21619 1.02796 1.00968 0.90585 1.20211 1.02085 0.97796 0.89808 1.19878 0.91511 0.98936 0.98859 1.21461 1.01129 0.92804 0.95449 1.21542 0.93846 0.99538 0.95284 1.21472 0.95335 0.96109 1.01430 1.18063 0.81786 1.00044 0.97695 1.91490 1.38672 1.93887 1.88307 1.17921 0.92139 0.90553 0.97148 1.91483 1.77183 1.59288 1.84407 0.92280 0.91805 0.92431 0.79355 0.93378 0.91381 0.89830 0.87467 0.89566 0.85629 0.88012 0.91856 0.88631 0.81608 0.80495 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 7.94 71.98 0.57 -4.58 16 2 C 0.13 4.21 3.50 45.28 0.16 4.36 16 3 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.17 5.91 3.46 46.18 0.16 6.07 16 5 H 0.06 2.38 8.11 -2.38 -0.02 2.36 16 6 N -0.75 -33.20 4.78 -317.34 -1.52 -34.71 16 7 C -0.23 -12.36 10.45 84.03 0.88 -11.48 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 9 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 10 N -0.98 -61.68 13.97 21.65 0.30 -61.37 16 11 Si 0.94 44.73 27.74 68.60 1.90 46.63 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.25 -11.06 6.45 99.48 0.64 -10.42 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 15 C -0.14 -4.04 6.77 31.99 0.22 -3.82 16 16 C 0.10 2.09 6.69 86.86 0.58 2.67 16 17 N -0.61 -15.74 3.09 -787.35 -2.43 -18.17 16 18 C 0.52 13.34 7.63 87.66 0.67 14.01 16 19 O -0.58 -19.26 14.89 -3.05 -0.05 -19.30 16 20 C -0.12 -1.96 4.69 29.85 0.14 -1.82 16 21 C -0.06 -1.03 4.41 29.85 0.13 -0.90 16 22 C -0.09 -1.27 5.14 -19.83 -0.10 -1.37 16 23 C -0.09 -0.70 9.68 22.27 0.22 -0.48 16 24 C -0.08 -0.43 10.04 22.27 0.22 -0.21 16 25 C -0.12 -1.11 10.02 22.31 0.22 -0.88 16 26 C 0.04 0.72 7.31 22.41 0.16 0.88 16 27 F -0.14 -2.90 17.18 44.97 0.77 -2.13 16 28 C 0.04 0.77 7.25 22.41 0.16 0.94 16 29 F -0.14 -3.38 16.48 44.97 0.74 -2.64 16 30 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 31 H 0.06 2.14 6.77 -2.39 -0.02 2.13 16 32 H 0.06 2.08 6.65 -2.39 -0.02 2.06 16 33 H 0.37 16.10 2.85 -92.71 -0.26 15.84 16 34 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.11 1.45 7.48 -2.39 -0.02 1.43 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.13 1.33 7.85 -2.39 -0.02 1.31 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.37 7.75 -2.39 -0.02 1.35 16 42 H 0.10 1.51 8.01 -2.39 -0.02 1.49 16 43 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.18 -0.31 8.06 -2.91 -0.02 -0.34 16 45 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -74.14 374.04 5.27 -68.87 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.68 Total: 22.43 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.86 Total: 0.40 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -3.65 Total: -114.26 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 1.51 Total: -4.77 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -74.14 5.27 -68.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987620421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.252 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds