Wall clock time and date at job start Tue Mar 31 2020 20:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.88015 * 2 1 4 4 C 1.54330 * 109.88061 * 238.98441 * 2 1 3 5 5 H 1.08999 * 110.72284 * 336.93006 * 4 2 1 6 6 N 1.46494 * 110.71879 * 100.03500 * 4 2 1 7 7 C 1.36945 * 119.99612 * 202.55997 * 6 4 2 8 8 H 1.07999 * 120.00077 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99637 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46819 * 59.99973 * 11 9 7 13 13 H 1.48494 * 109.47285 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47086 * 300.00269 * 11 9 7 15 15 C 1.55159 * 103.09869 * 218.48314 * 4 2 1 16 16 C 1.55121 * 101.49016 * 35.28404 * 15 4 2 17 17 N 1.47026 * 109.87943 * 121.17905 * 2 1 3 18 18 C 1.34770 * 125.65019 * 298.31881 * 17 2 1 19 19 O 1.21281 * 119.99782 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00555 * 180.02562 * 18 17 2 21 21 C 1.52991 * 109.47370 * 180.02562 * 20 18 17 22 22 C 1.50705 * 109.47267 * 179.97438 * 21 20 18 23 23 C 1.38253 * 120.00314 * 264.72942 * 22 21 20 24 24 C 1.38217 * 120.07057 * 179.77068 * 23 22 21 25 25 C 1.38254 * 120.06909 * 0.49706 * 24 23 22 26 26 C 1.38369 * 119.99974 * 359.75440 * 25 24 23 27 27 F 1.35104 * 120.03221 * 180.02562 * 26 25 24 28 28 C 1.38375 * 119.99753 * 84.99937 * 22 21 20 29 29 F 1.35102 * 120.03461 * 359.95359 * 28 22 21 30 30 H 1.09000 * 109.47709 * 181.01507 * 1 2 3 31 31 H 1.09004 * 109.47299 * 301.01738 * 1 2 3 32 32 H 1.09003 * 109.46915 * 61.01114 * 1 2 3 33 33 H 0.96995 * 120.00290 * 22.82888 * 6 4 2 34 34 H 0.97005 * 120.00046 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00139 * 153.49299 * 15 4 2 36 36 H 1.09009 * 111.00441 * 277.33629 * 15 4 2 37 37 H 1.09004 * 110.42030 * 204.29460 * 16 15 4 38 38 H 1.08994 * 110.20835 * 82.04225 * 16 15 4 39 39 H 1.09002 * 109.46710 * 300.00207 * 20 18 17 40 40 H 1.08996 * 109.47026 * 59.99205 * 20 18 17 41 41 H 1.09002 * 109.47343 * 299.99783 * 21 20 18 42 42 H 1.08999 * 109.47633 * 60.00118 * 21 20 18 43 43 H 1.08006 * 119.96362 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.96374 * 180.23167 * 24 23 22 45 45 H 1.07998 * 119.99514 * 179.77260 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3039 -1.4414 -1.6222 6 7 2.4555 0.1992 -2.2872 7 6 2.5064 -0.2040 -3.5949 8 1 2.2514 -1.2202 -3.8570 9 6 2.8856 0.6935 -4.5836 10 7 3.1968 1.9318 -4.2642 11 14 2.9556 0.1434 -6.3674 12 1 1.6103 -0.3162 -6.7968 13 1 3.3849 1.2810 -7.2198 14 1 3.9266 -0.9720 -6.5037 15 6 3.2868 -1.5169 -0.6979 16 6 2.8143 -1.8806 0.7341 17 7 2.0299 -0.7158 1.1829 18 6 1.8084 -0.3649 2.4652 19 8 1.1451 0.6182 2.7189 20 6 2.3850 -1.1940 3.5837 21 6 1.9872 -0.5830 4.9288 22 6 2.5633 -1.4124 6.0474 23 6 1.7956 -2.3939 6.6463 24 6 2.3241 -3.1587 7.6691 25 6 3.6182 -2.9368 8.1024 26 6 4.3873 -1.9518 7.5086 27 9 5.6521 -1.7348 7.9311 28 6 3.8588 -1.1879 6.4788 29 9 4.6081 -0.2259 5.8971 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3634 0.5296 0.8807 32 1 -0.3633 0.4981 -0.8989 33 1 2.6886 1.1107 -2.0513 34 1 3.4622 2.5589 -4.9551 35 1 3.4809 -2.4128 -1.2877 36 1 4.1664 -0.8737 -0.6663 37 1 3.6715 -2.0360 1.3894 38 1 2.1884 -2.7726 0.7089 39 1 1.9984 -2.2110 3.5185 40 1 3.4716 -1.2123 3.4996 41 1 2.3734 0.4342 4.9942 42 1 0.9006 -0.5651 5.0127 43 1 0.7832 -2.5661 6.3118 44 1 1.7242 -3.9275 8.1333 45 1 4.0287 -3.5326 8.9042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987620428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:04 Heat of formation + Delta-G solvation = -93.784351 kcal Electronic energy + Delta-G solvation = -28704.938978 eV Core-core repulsion = 24358.300793 eV Total energy + Delta-G solvation = -4346.638185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.77183 -48.84829 -40.12822 -39.40609 -37.52520 -34.34037 -34.13180 -31.76662 -30.94949 -30.72135 -30.11400 -28.92211 -25.38507 -25.20937 -23.23029 -23.07564 -22.59365 -21.60495 -20.08633 -18.75149 -18.24646 -17.66955 -17.39234 -17.22688 -16.71250 -16.59524 -16.08368 -15.36677 -15.26425 -15.16435 -14.86169 -14.73946 -14.34061 -13.83653 -13.63602 -13.45546 -13.36927 -13.19731 -13.07178 -12.77768 -12.55322 -12.41817 -12.16580 -12.00167 -11.87384 -11.62013 -11.52596 -11.27475 -11.16172 -11.03919 -10.84400 -10.59954 -10.28562 -10.05546 -9.79185 -9.63712 -9.26538 -9.14597 -8.95789 -8.41256 -7.05104 -5.82865 -3.13593 0.50920 0.52229 2.77122 2.88138 3.15339 3.38530 3.40349 3.45079 3.46275 3.97742 4.07392 4.26761 4.45842 4.53377 4.63331 4.67135 4.84204 4.86652 5.00790 5.19282 5.27261 5.31302 5.36390 5.39635 5.44927 5.47456 5.55871 5.58808 5.66394 5.73303 5.77935 5.85223 5.91637 5.94003 6.07927 6.11852 6.28389 6.33097 6.44361 6.56848 6.59967 6.72130 6.90613 7.63362 7.75759 8.31863 8.34901 9.45700 10.00234 10.34845 11.39173 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.002097 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.276530 B =13348.081893 C =13738.747508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.077 0.923 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.067 4.067 22 C -0.085 4.085 23 C -0.098 4.098 24 C -0.098 4.098 25 C -0.133 4.133 26 C 0.068 3.932 27 F -0.129 7.129 28 C 0.070 3.930 29 F -0.123 7.123 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -13.077 25.320 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.095 0.905 4 C 0.064 3.936 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.342 5.342 18 C 0.315 3.685 19 O -0.422 6.422 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.086 4.086 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.048 3.952 27 F -0.108 7.108 28 C 0.050 3.950 29 F -0.102 7.102 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.249 -12.523 25.315 28.332 hybrid contribution 0.784 0.131 -0.945 1.234 sum -1.466 -12.392 24.370 27.379 Atomic orbital electron populations 1.22033 0.94901 1.01487 1.02701 1.21925 0.94429 0.96935 0.84502 0.90504 1.21243 0.93520 0.91574 0.87217 0.91637 1.42347 1.80161 1.10570 1.02411 1.19155 1.39154 0.95982 0.83293 0.91050 1.24774 1.01974 0.95747 0.98154 1.69655 1.51680 1.03771 1.32610 0.86251 0.77773 0.77257 0.84765 1.21181 1.21676 1.21199 1.23616 1.01456 1.01763 0.92945 1.22423 0.94585 0.88285 0.97278 1.48589 1.52015 1.28584 1.05058 1.20113 0.80622 0.85345 0.82407 1.90688 1.40492 1.27784 1.83252 1.21598 1.02736 1.00249 0.92491 1.20328 1.02155 0.98617 0.89311 1.19970 0.91649 0.98275 0.98732 1.21110 1.00471 0.94239 0.95755 1.21099 0.94418 0.99511 0.96618 1.21103 0.94861 0.97702 1.01467 1.17724 0.81225 0.99146 0.97133 1.91541 1.36237 1.94097 1.88907 1.17603 0.90808 0.90968 0.95662 1.91554 1.75433 1.60408 1.82790 0.93178 0.92025 0.91174 0.77980 0.93294 0.90525 0.90663 0.91357 0.91681 0.88717 0.88910 0.89340 0.88986 0.84045 0.84145 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.09 37.15 0.34 -2.19 16 2 C 0.13 2.21 3.21 -66.95 -0.22 1.99 16 3 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 4 C 0.18 3.33 3.12 -66.09 -0.21 3.12 16 5 H 0.07 1.23 7.81 -51.93 -0.41 0.83 16 6 N -0.71 -17.25 5.24 -51.65 -0.27 -17.52 16 7 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 11 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 C -0.16 -2.51 6.79 -24.47 -0.17 -2.67 16 16 C 0.10 1.23 6.70 -2.41 -0.02 1.21 16 17 N -0.61 -9.09 3.07 -162.88 -0.50 -9.59 16 18 C 0.53 7.68 7.64 -10.99 -0.08 7.60 16 19 O -0.54 -9.73 15.03 5.56 0.08 -9.65 16 20 C -0.13 -1.34 4.69 -27.89 -0.13 -1.47 16 21 C -0.07 -0.65 4.41 -27.89 -0.12 -0.77 16 22 C -0.09 -0.72 5.14 -104.56 -0.54 -1.26 16 23 C -0.10 -0.59 9.68 -39.58 -0.38 -0.97 16 24 C -0.10 -0.49 10.04 -39.58 -0.40 -0.89 16 25 C -0.13 -0.83 10.02 -39.53 -0.40 -1.23 16 26 C 0.07 0.62 7.31 -39.37 -0.29 0.34 16 27 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 28 C 0.07 0.71 7.25 -39.37 -0.29 0.42 16 29 F -0.12 -1.51 16.48 2.25 0.04 -1.47 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.05 6.91 -51.93 -0.36 0.69 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.39 10.11 7.54 -40.82 -0.31 9.80 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 37 H 0.07 0.72 7.48 -51.93 -0.39 0.34 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 41 H 0.09 1.02 7.75 -51.93 -0.40 0.62 16 42 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 43 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 44 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 45 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -31.87 381.69 -8.73 -40.60 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.44 Total: 7.11 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -3.14 Total: -3.83 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.05 Total: -54.01 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.87 -8.73 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987620428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.181 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds